- Clone 'AHC0AAA226YD12' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phmamm.CG.MTP2014.S6...' >
- EST 'AHC0AAA229YJ20_RM1' >
- Transcript 'Phfumi.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S839.g02838.01.t
Possible name(s)
RARA; RARB; RARG
Gene model
Location
S839 [9,147 / 15,634]
Amino acid sequence
Length: 315
>Phfumi.CG.MTP2014.S839.g02838.01.p
MQYTCHRTKNCEINKSTRSRCQFCRFQKCINAGMLRESVRNDRNKKRGKEKDSRNGSENG
NPTSPEEVTCPPEIENLVITVAKSHTETFPNTNTLSQYKVNQPPSVEAIKTKGTDGRLWE
KFAELSTKSIVKIVEFAKGIPGFQDFTIADQITLLKCACLEVLFLRICSRFSPDNDSMTF
SDGLVLTRNQLKFAAFGPITDQVFSFAQSLHPLEADPTEIGLLSAICLICPDRPDLEEPD
KVEQLQETLLEGLKFYTRKRRPDSPQLFPKLIMKISDLRSISMRGADRVVTVKAEVAPGA
MPPLITEMLENEEDE
Nucleotide sequence
Length: 948
>Phfumi.CG.MTP2014.S839.g02838.01.t
ATGCAGTACACCTGCCATCGTACAAAGAACTGCGAGATCAACAAATCCACGCGCAGCAGG
TGCCAGTTCTGTCGCTTCCAGAAATGCATAAACGCGGGAATGCTCCGTGAATCTGTGCGA
AACGATCGCAACAAAAAGCGTGGAAAGGAAAAAGACTCGCGGAACGGAAGTGAGAACGGA
AATCCTACGTCACCGGAGGAAGTGACGTGCCCGCCCGAGATTGAGAATTTGGTGATCACC
GTTGCAAAATCCCACACTGAGACTTTCCCCAACACCAATACCCTGAGCCAATACAAAGTG
AACCAACCCCCATCGGTGGAGGCGATAAAAACCAAAGGAACGGATGGGCGATTGTGGGAA
AAATTCGCTGAGCTTTCCACAAAATCGATTGTGAAGATTGTGGAGTTCGCCAAAGGGATT
CCGGGATTCCAGGACTTCACTATAGCTGACCAGATCACGCTGCTTAAATGCGCTTGTCTC
GAAGTTCTGTTTCTTCGAATTTGTTCTCGATTTTCACCTGACAATGACTCCATGACTTTC
TCCGACGGACTCGTTCTGACACGAAACCAGTTAAAGTTCGCTGCGTTCGGACCGATCACA
GACCAGGTATTTTCATTTGCCCAGTCTTTGCATCCACTTGAAGCGGACCCAACGGAAATT
GGTCTTCTCAGCGCTATCTGCCTGATTTGTCCTGATCGGCCTGACCTTGAGGAGCCGGAC
AAGGTCGAACAGCTGCAAGAAACACTGCTGGAAGGACTGAAGTTTTACACGCGAAAACGT
CGACCAGATTCTCCTCAACTCTTCCCGAAACTTATCATGAAGATTTCGGATCTACGAAGC
ATCAGTATGAGAGGCGCCGACCGAGTAGTTACAGTGAAAGCCGAAGTTGCCCCTGGAGCA
ATGCCACCTCTTATCACCGAGATGCTGGAAAACGAAGAGGACGAATGA
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[1-37] 3.8E-4 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[1-63] 4.5E-13 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[1-41] 11.283 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[2-35] 8.8E-10 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[18-310] 3.67E-69 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[30-40] 5.0E-29 - T[125-146] 5.0E-29 - T[146-162] 5.0E-29 - T[213-228] 5.0E-29 - T[270-287] 5.0E-29 |
| PRINTS |
Retinoic_acid_rcpt (IPR003078) - T[38-51] 2.8E-28 - T[168-192] 2.8E-28 - T[205-217] 2.8E-28 - T[235-256] 2.8E-28 - T[279-294] 2.8E-28 |
| ProSiteProfiles |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[73-311] 53.745 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[121-289] 4.4E-24 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[124-282] 3.0E-37 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 58.413 % | 366 | 2.22E-125 |
| RARG_HUMAN | 56.869 % | 338 | 1.25E-114 |
| RARA_HUMAN | 57.827 % | 357 | 6.55E-122 |