Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Molecular Tool 'cieg02b06-MO (Hamada's MO)' > 
  2. Molecular Tool 'cieg14h09-MO (Hamada's MO)' > 
  3. Molecular Tool 'cieg26p03-MO (Hamada's MO)' > 
  4. Transcript 'Phfumi.CG.MTP2014.S9...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S977.g03065.01.t

Possible name(s)

LHX1; LHX5

Gene model

Phfumi.CG.MTP2014.S977.g03065

Location

S977 [4,678 / 9,713]

Sequences

Amino acid sequence

Length: 334

>Phfumi.CG.MTP2014.S977.g03065.01.p
MHGGFSSPSSPLTSVHKFRLKRDVTVVYHVNCFACFACGRKLLPGNEVFFSPSNNNKALC
SDDYMAGNYQQAEMFSPSPNDESSVMAMPSVDDTDVKEALEGSGYEWVTAEGEGNPCKSE
SVDSSLSGGDSSALPVCVPSTKRRGPRTTIKAKQLDALKAAFAATPKPTRHIREQLARDT
GLSMRVIQVWFQNRRSKERRMKQLNAFGNRRHFFERNGPVRMRETPKVDQVINSFYQQGA
GGFPPNYNPAPVIPSQNEGNYPFPGATIPCEPRQPEWPQAQQSPQHSIMGCFVAPQNFQN
KVQQSKGYFIMATSPPGKHQTPDDVSEMQFWGRE

Nucleotide sequence

Length: 1,193

>Phfumi.CG.MTP2014.S977.g03065.01.t
ATGGCAGCTCAAAACTGTACATGGTGCGGCAACGCCATATTGGACAAACACATTTTGCAG
GTCGACAATAAAGTTTATCACGAGGAATGTGTGAAATGCCAAGATTGTCAATGTCAGCTT
CAAGAAAAATGTTACGCCAGAGACGGCTTGTTGTTCTGCTTCGATGATTTTACCAGGCGT
TACGGCAGCAGATGCACGGGGGGTTTTCCTCCCCGTCTTCGCCACTGACCTCGGTGCACA
AGTTTCGACTGAAGCGTGACGTCACAGTGGTGTATCACGTGAACTGTTTCGCGTGCTTCG
CTTGCGGCCGGAAGCTGTTGCCGGGCAACGAAGTCTTTTTTTCACCCAGCAACAACAACA
AGGCTCTGTGCAGCGACGATTACATGGCTGGAAACTACCAACAAGCTGAAATGTTTAGTC
CCAGTCCCAACGACGAATCGAGTGTAATGGCGATGCCTTCTGTCGACGACACCGACGTCA
AAGAAGCTCTGGAGGGGTCGGGGTACGAGTGGGTCACCGCCGAGGGTGAGGGGAACCCCT
GTAAATCGGAATCAGTCGACAGCAGTTTGTCTGGCGGCGATTCTTCGGCTCTACCAGTTT
GCGTCCCTTCGACAAAACGACGGGGACCGCGGACCACCATCAAAGCAAAACAATTGGACG
CGCTTAAGGCAGCGTTTGCGGCGACGCCGAAACCCACACGTCACATCAGGGAACAGCTTG
CCAGAGACACCGGACTTAGTATGAGAGTGATACAGGTCTGGTTTCAAAATCGGCGCAGCA
AGGAGCGACGAATGAAGCAACTGAACGCTTTTGGAAATCGACGCCATTTTTTCGAGCGAA
ACGGTCCAGTGCGCATGCGCGAAACGCCGAAAGTGGATCAAGTTATAAACTCCTTCTACC
AACAAGGAGCTGGCGGATTTCCCCCAAACTATAACCCGGCTCCGGTGATTCCTTCCCAGA
ACGAAGGGAATTACCCGTTTCCGGGGGCCACAATCCCCTGCGAGCCGAGGCAACCGGAAT
GGCCCCAAGCACAACAGTCACCGCAACATTCCATCATGGGCTGCTTTGTGGCGCCACAAA
ACTTTCAAAACAAGGTGCAGCAATCCAAGGGCTATTTTATCATGGCGACTTCACCCCCCG
GCAAACATCAAACACCTGATGACGTCAGCGAAATGCAGTTTTGGGGTCGGGAG

InterProScan

Pfam
Znf_LIM (IPR001781) - T[27-65] 4.3E-7
SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[124-202] 7.27E-21
ProSiteProfiles
Homeobox_dom (IPR001356) - T[141-201] 18.431
SMART
Homeobox_dom (IPR001356) - T[143-205] 1.4E-22
Pfam
Homeobox_dom (IPR001356) - T[144-200] 9.8E-20
CDD
Homeobox_dom (IPR001356) - T[144-202] 1.0329E-20
ProSitePatterns
Homeobox_CS (IPR017970) - T[176-199] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LMX1B_HUMAN 35.079 % 94.4 1.07E-21
LHX5_HUMAN 47.706 % 169 2.38E-49
LHX1_HUMAN 46.698 % 168 6.56E-49