- Transcript 'Mooccu.CG.ELv1_2.S15...'
Transcript Model
Transcript Id
Mooccu.CG.ELv1_2.S155213.g05073.01.t
Possible name(s)
PCDH18; PCDHGB4; PCDHGB6
Gene model
Location
S155213 [5,700 / 8,588]
Amino acid sequence
Length: 273
>Mooccu.CG.ELv1_2.S155213.g05073.01.p
MHLLVLFALICACACQSTKETIYIFEEIAKGSTLANIAELFGRLEEDVKYKLVGNGIYTS
EDGEVFQHTSLDGYDWVTVGNTDGEIKLLQKLDRDVECKKAKLCSLQVQIIRLPDQHLYE
VNFLIKDLNDNKPIFPQDPIEFSVKENIADGETLNLDAYMAHDYDSSFNGDIEYRLVDNP
FFGLTESTDGGGFVHVQLDVLGSIDFEETQSIELTITASDRGIPPLSSSAKVIINIEDVN
DNKPVFRRQVIDHVQCLIQINQCDNFRSTLSV*
Nucleotide sequence
Length: 2,007
>Mooccu.CG.ELv1_2.S155213.g05073.01.t
GTGGATAAATACTGTTTAAAAAGAATAATTTTGTGACGAAATTCAATCAAAGGCGATGTT
TACTAGTCAGGTAACGTTCGAGGGAGAAGTTAAATTTACTACTTAGTTGAAATAATCAAT
ATAGTCGGCAACAAACCACTGCACGAGTCCAATTAGCTTACGTCAAAATAATGTAGCAAA
AAAGTTCTGAGGGAGAAAGCAAAAACAACTGGCCTTTGGTCTCGAGCAATAAGTGAGGTT
GACTGGACCTCATGTTGCGTGTCTACCAGAGGCTCAGACATTCCCTGGGAGCAATCATTA
CGGCGATGTGCATTCGTTAGCATACACAGGATAATAGCAATTGATTGAACAGAGAAAAGC
AATAATTGAAGTTTTTAAAGTTATCGATATTTTATTACAATTATAACTTGTTCTATTCTT
AATCCATTCCTTCGTAAATTAACGAAGAAGGACTGGATGGTTGATCGTAATCCACATCGA
TTGACATGATATCAGAATTGACCAAAAAGACAGTTTTGTTTTGGCATAACTTCGGGAAGT
TTCATGATGCACAATAGTGGGAAATTGAGGATGATATCACACAAAATTAAATTAATATCG
AATTATAATAGAGTGTTATAAATACAGAAAATTTTCAAGTTTGTTTGTGTTTTCAGATCT
TTCTCGATTACAATTTACGTAAGTGCTTATTGTACAATAAAGTCGTTGACAAACGAGAAG
GAATAAATGAAAATATAACAAGACAAGAAAGCATTAATACGACACTGAGCGCTGGAAAAA
ACGCAACAGGAACCACTCAATATGCATCTTCTAGTGCTATTTGCGTTGATCTGCGCATGC
GCATGTCAAAGCACTAAAGAAACAATTTACATATTTGAAGAAATTGCGAAAGGTTCGACG
CTGGCTAACATCGCCGAATTATTCGGTCGTTTGGAAGAAGATGTTAAATACAAGCTTGTT
GGAAACGGAATTTACACATCGGAAGACGGAGAGGTGTTCCAACACACATCACTCGATGGA
TATGATTGGGTGACGGTTGGTAACACCGATGGAGAAATCAAACTTTTGCAAAAACTTGAT
CGGGACGTCGAATGCAAAAAAGCAAAATTATGTTCACTTCAAGTGCAGATTATCCGTCTG
CCGGACCAACATTTATATGAAGTGAACTTTTTGATAAAAGATTTGAATGACAACAAGCCG
ATATTCCCACAAGATCCCATTGAATTTTCTGTGAAAGAGAACATAGCTGATGGTGAAACG
TTAAACCTTGACGCGTACATGGCCCACGACTATGACAGCAGCTTCAATGGAGACATAGAG
TATAGATTAGTGGATAATCCATTCTTCGGTTTGACAGAAAGCACTGATGGTGGAGGATTT
GTTCATGTTCAGTTAGACGTGCTCGGTTCTATCGACTTCGAAGAAACCCAATCCATTGAA
TTGACTATCACTGCGTCAGACAGGGGAATCCCTCCATTGAGCTCGTCGGCAAAAGTCATA
ATAAACATCGAAGATGTCAACGATAATAAGCCCGTCTTCAGACGACAGGTAATTGACCAT
GTCCAATGTTTAATTCAAATAAACCAATGTGATAATTTCAGAAGTACTCTGTCAGTCTGA
AAGAGAATCAATTACCAGGACACGAGGTCGTGACTGTTCAAGCAGACGACGCAGATtctg
gagatttgggacaagtccaatattacttgtCACACAGAAACAATCGTCACGTGATGCAGC
TTGTGGCTGTCCATCCACAGACTGGAGTGGTCACTTTGAATGAAAAACTTGACCGGGAGA
GAGATAATGGTGTTCGCATTCGAATTGAGGCAAGTGACTCGAGCACAACGGAACCGAAAA
CCTCTCAAACAATAATTGAAATAAACATTGAAGATGTGAATGATAATGCACCTGTCATCC
ACGTCAATTATGTTGTTTCATCCGACAAAAACACAGCATATGTCAACGAAAACTCCGTTA
TTGGAACATTCATTGCTCGGATATCGG
| SMART |
Cadherin (IPR002126) - T[307-400] 2.2 - T[426-511] 2.7E-20 |
| PRINTS |
Cadherin (IPR002126) - T[342-361] 1.2E-13 - T[381-400] 1.2E-13 - T[400-413] 1.2E-13 - T[461-487] 1.2E-13 - T[495-512] 1.2E-13 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[392-518] 1.78E-22 |
| Pfam |
Cadherin (IPR002126) - T[408-504] 2.8E-9 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[501-511] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDGI_HUMAN | 31.739 % | 105 | 1.93E-25 |
| PCD18_HUMAN | 32.283 % | 102 | 1.94E-24 |
| PCDGG_HUMAN | 31.687 % | 102 | 1.66E-24 |