- Clone 'cima019a08' >
- Transcript 'Mooccu.CG.ELv1_2.S40...'
Transcript Model
Transcript Id
Mooccu.CG.ELv1_2.S409281.g19003.02.t
Possible name(s)
PAM; TRIM3; TRIM71
Gene model
Location
S409281 [3,202 / 9,683]
Amino acid sequence
Length: 426
>Mooccu.CG.ELv1_2.S409281.g19003.02.p
APYPGYAGKDSTAAIAAGTAVKPAVPSEHIHGSSMHMDDDDEFSEDIQHEPTGHSREGEL
PAHQEESLVQEQEEEQPVLQADTDKQSGQDEEEEHPVLQEDTDKQSGQDEEENHPNVLVD
AEDSARSRGHGYKDDPPVEDIKAVPNWLDASEFIGQVGGVAIDDRGFIHVFHRSHRVWGY
DSFNDDNIYQHQNQPINNDTIFKLDPDSGKIVSQWGRGQFFMPHGATVDPFNNLWLTDVA
MHQVFKYPLDGAMEPTFVLGERFVQGNDASHFCKPTSTAVDKKGFLYVADGYCNGRVVKF
SPDGVYVTEWGKMVTARQMISGSSPPPGVFNIVHSVALTTNDSEIWIADRENGRIQCYTT
DGKFLRIIQDKQNLGKKIFAISFSENKNGLIHGVNNGASEVVEGFTIDYQTHEIXXXXLL
YKTIH*
Nucleotide sequence
Length: 1,557
>Mooccu.CG.ELv1_2.S409281.g19003.02.t
GCTCCCTATCCCGGTTATGCTGGAAAAGATTCGACAGCGGCGATTGCAGCAGGGACTGCC
GTCAAACCGGCCGTACCGTCGGAACATATACACGGTTCATCAATGCATATGGATGATGAC
GATGAATTCTCAGaGGACATCCAACATGAACCAACTGGTCATTCTCGTGAGGGTGAACTG
CCTGCCCATCAGGAAGAGTCTCTTGTTCAAGAACAAGAAGAGGAACAACCTGTTTTACAG
GCGGACACTGATAAACAATCTGGGCAGGATGAAGAAGAGGAACATCCTGTTTTACAGGAG
GACACTGATAAACAATCTGGACAAGATGAAGAAGAGAATCATCCCAATGTTCTTGTAGAT
GCAGAAGACTCTGCAAGATCACGAGGACATGGATACAAAGATGATCCTCCTGTTGAAGAT
ATTAAAGCTGTTCCTAACTGGTTGGATGCATCCGAGTTCATAGGTCAAGTGGGAGGAGTT
GCTATTGACGATCGGGGATTCATTCATGTGTTTCATCGTTCTCACAGAGTTTGGGGTTAC
GATTCTTTTAACGACGACAATATATATCAGCATCAAAATCAACCGATTAATAACGATACC
ATATTCAAATTGGATCCCGATTCTGGCAAGATAGTCAGCCAATGGGGCAGAGGACAGTTT
TTCATGCCACATGGGGCTACCGTTGACCCGTTTAATAATTTATGGCTAACAGATGTTGCA
ATGCATCAGGTGTTTAAATATCCTCTAGATGGGGCTATGGAGCCAACATTTGTATTAGGA
GAAAGGTTTGTTCAAGGTAATGATGCTAGCCACTTTTGTAAACCAACATCAACTGCAGTG
GATAAAAAAGGCTTCCTTTATGTAGCAGATGGCTACTGCAACGGGCGAGTGGTGAAATTT
TCACCAGATGGAGTTTATGTTACAGAATGGGGGAAGATGGTTACTGCTAGACAAATGATT
AGTGGTTCCTCTCCACCACCCGGTGTGTTCAACATAGTACACAGCGTTGCCTTGACAACC
AACGATAGCGAAATATGGATCGCCGATCGTGAAAACGGACGGATTCAATGCTACACGACG
GATGGAAAGTTCTTACGTATCATTCAAGATAAACAAAACCTCGGAAAAAAAATATTTGCC
ATCAGCTTCTCTGAAAATAAAAATGGTTTAATCCACGGAGTGAACAACGGAGCCTCGGAA
GTCGTGGAAGGATTTACGATCGACTACCAAACACATGAAATCNNNNNNNNNNCTTTGTTA
TATAAAACGATCCACTAATTTTGTTCTAATCTTGATGTCTTTCAGATGGTTTAGTCCACG
GAGTGAACAACGGAGCCTCGGAAGTTGTCGAAGGATTCACGATCGACTACCAAACACATG
AAATTGTTAATAAATGGGGAGTGGAACAAATCAACAATCCTCATGCTATTGCTTGTTATC
GTGATGGAACACAGATGTACGTTGGACAACTGAGTGGTACGCGTGTATTGAAGTTCGTAA
ATAACGAAGTAGTCCTACCACCTGGTGACACTCTTGTACCATACGGTGCGTTCATGC
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[136-428] 1.2E-92 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[159-183] 4.235 - T[209-250] 8.779 - T[266-303] 11.246 - T[330-361] 10.054 |
| PRINTS |
PHM/PAL (IPR000720) - T[166-184] 2.2E-7 - T[229-248] 2.2E-7 - T[271-294] 2.2E-7 |
| Pfam |
NHL_repeat (IPR001258) - T[272-300] 1.1E-6 - T[330-358] 2.0E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| AMD_HUMAN | 41.667 % | 218 | 9.6E-63 |