- Transcript 'KH2012:KH.C9.315.v3....' >
- Clone 'cima879201' >
- Transcript 'KH2012:KH.C9.73.v5.A...' >
- Transcript 'Mooccu.CG.ELv1_2.S49...'
Transcript Model
Transcript Id
Mooccu.CG.ELv1_2.S495494.g26076.01.t
Possible name(s)
GDF2; GDF6; NODAL
Gene model
Location
S495494 [9,592 / 11,684]
Amino acid sequence
Length: 448
>Mooccu.CG.ELv1_2.S495494.g26076.01.p
MILIFIFFQNLIYINKINMNCMKLITLVAMLAATAEGSLPSFARKMMEFQQKVMEEIQPN
LQKVTQKHTAPNHMLNLYREKEGLEMRELGRGRSTRGGMHSFTRKQSLALKKSNFVKSFT
AIESEVIDNKLVATFDLSAMKDHEKIRLAEIRIEHLNGNEVNKIEIRNQDQKLGDMKVGK
SEMVINVTPIIKRWYKSDNRQTANVITSVKDNQSAEITLTIYSINKHYNLIKTVEERQER
SRRSASYSNRMRRRNRNGKGKRGRNNKTSDGRQTQEEDEVEMKMNSIGMGNELEDSELDA
YHVNGEESNQDDDWINQQMTRKNEEDKNRPQPKRVEYSQRAKPTHCRRVAFQVDFDKIGW
GSWIIFPKRYNAYRCEGSCRLPLHDNVNPTNHAFVQSMMAASNPHANIPGPCCVPTKLKP
ISILYYENGEVKQRTHEDMIVEECGCR*
Nucleotide sequence
Length: 1,573
>Mooccu.CG.ELv1_2.S495494.g26076.01.t
AACAGTTTATTATTTAGATAGGATTTATATATTTAATGTAAAAATAAGTTACATTATGCA
ATGATACTAATCTTTATTTTCTTCCAGAACTTAATCTACATAAATAAAATAAATATGAAT
TGCATGAAATTAATAACATTGGTGGCGATGTTGGCTGCAACCGCGGAAGGAAGTTTGCCA
TCTTTTGCAAGAAAAATGATGGAATTTCAACAAAAAGTAATGGAAGAAATCCAACCAAAC
TTGCAAAAAGTTACACAGAAACACACCGCTCCAAACCATATGTTGAATTTGTACCGAGAA
AAGGAGGGTTTGGAAATGCGGGAACTTGGACGAGGCAGAAGTACACGTGGTGGAATGCAT
TCATTCACACGCAAACAATCACTCGCTTTGAAAAAATCAAACTTCGTCAAGAGTTTTACG
GCAATAGAATCGGAAGTTATCGACAATAAACTCGTCGCGACCTTTGACCTCTCGGCCATG
AAGGACCATGAAAAAATTCGATTGGCTGAAATCAGAATTGAACATTTGAATGGAAATGAA
GTAAATAAAATTGAAATCCGAAATCAAGATCAAAAACTCGGCGACATGAAAGTTGGCAAA
AGTGAAATGGTTATCAACGTCACTCCAATCATCAAACGGTGGTACAAGAGTGACAATAGA
CAAACTGCAAATGTTATCACAAGTGTGAAAGACAATCAAAGCGCTGAAATCACTTTAACA
ATTTACTCCATCAACAAACATTACAACTTGATCAAAACAGTTGAAGAGCGACAAGAAAGA
TCCAGACGATCTGCTTCTTACTCGAACAGAATGCGAAGAAGAAACAGAAACGGAAAAGGA
AAACGAGGAAGAAATAATAAAACATCTGATGGAAGACAAACACAAGAAGAAGACGAAGTA
GAAATGAAAATGAATTCCATTGGTATGGGAAATGAACTGGAAGATTCAGAATTGGATGCT
TATCACGTGAATGGCGAAGAAAGCAACCAAGATGATGACTGGATCAATCAACAGATGACA
CGCAAAAATGAAGAAGATAAAAACAGACCTCAACCAAAACGAGTTGAATATTCTCAAAGA
GCTAAACCAACCCATTGTAGACGTGTTGCATTTCAAGTTGACTTCGATAAGATTGGATGG
GGTTCATGGATCATCTTCCCAAAGAGATACAACGCATACAGATGTGAAGGTTCATGTCGA
CTTCCATTACATGATAACGTCAACCCAACAAACCATGCGTTCGTACAAAGCATGATGGCA
GCGTCCAATCCACACGCAAACATTCCTGGTCCATGCTGTGTACCAACTAAACTGAAGCCC
ATCAGTATCTTGTACTATGAAAATGGTGAAGTGAAGCAACGTACTCATGAAGATATGATC
GTTGAAGAATGTGGTTGCAGATAAATCAACCATCAAACCCAAACTCATGCGCTTACCTTC
ACTTCACTGTATGCTCCATATTTATATTTTTATACTTTTTGTTCATTTTATTTTTGCATG
TTTCTATTTATTTTTACAAGGCATCAAATGCCTTATTTTCCAGTTTCACAAATAAACACA
TTCATACTGAACA
| PANTHER |
TGF-beta-rel (IPR015615) - T[71-467] 5.6E-81 |
| Pfam |
TGF-b_propeptide (IPR001111) - T[79-180] 5.2E-6 |
| ProSiteProfiles |
TGF-b_C (IPR001839) - T[347-467] 38.447 |
| Gene3D |
Cystine-knot_cytokine (IPR029034) - T[351-467] 1.0E-37 |
| SUPERFAMILY |
Cystine-knot_cytokine (IPR029034) - T[359-467] 4.82E-37 |
| Pfam |
TGF-b_C (IPR001839) - T[365-466] 2.3E-31 |
| SMART |
TGF-b_C (IPR001839) - T[366-467] 9.5E-57 |
| ProSitePatterns |
TGFb_CS (IPR017948) - T[384-399] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NODAL_HUMAN | 59.406 % | 145 | 8.91E-40 |
| GDF6_HUMAN | 49.515 % | 118 | 4.92E-29 |
| GDF2_HUMAN | 48.113 % | 117 | 8.08E-29 |