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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C1.1004.v1...' > 
  2. Transcript 'Mooccu.CG.ELv1_2.S51...' > 
  3. EST 'AHC0AAA236YA07_RM1' > 
  4. Transcript 'Mooccu.CG.ELv1_2.S51...' > 
  5. Transcript 'Mooccu.CG.ELv1_2.S51...'

Transcript Model

Transcript Id

Mooccu.CG.ELv1_2.S519575.g28770.02.t

Possible name(s)

NPC1; PTCHD3

Gene model

Mooccu.CG.ELv1_2.S519575.g28770

Location

S519575 [5,383 / 11,528]

Sequences

Amino acid sequence

Length: 724

>Mooccu.CG.ELv1_2.S519575.g28770.02.p
MEKNDNSEIKIMKAKLLNAWKNTGYLSFAGFIVGIFVITAFIPLTVMVIMDKLDLNELAT
HRQSLKSTANWCVGIGLATSFVHIIGCFSIIIRTKKLLVVSLVFVCVHFVCIFGFMVAGI
VDSGTHKEFMRTNWNNLRLVTKAMVQKHFSCCGFDGPNDTLTKDASCYAIQSEQITWPSG
CYGRVMSTQLPAPSVINSRNEEVIPGNASWNNFICAFAFFFILLIIVDLLNILAMIYLMK
ITDFTKVRNCSTTKLVNLKENRKSTVTTVTVVLEEEVEIEEENTNKSSPEKNSFSDTRSS
NSGSSKIPWYAIPSHYFTLYLENLFYWIGFIVGKHPKNTIVLSLIFSVVVSIGLLQRKDG
GGGLENYLAKDSQAIKNADIVSNYFGLHGYHMMIIENENVISNDSFQKSWKIDKRVKSLT
SSTQMTFDTVCLKYGDTCGQNSLFELWGYSDPVISTLTDEEIMQKINPKASIQSPMFGGT
YPIDTIIGGQNVSSSGEIASAKAHKLVFITEENADIADWEKKLIEFSLSSPEGLKVYVQA
SSSFVDENTKTQTGEIYLLAIGFPLVFIYISVMSGKISKLRHRTWLAIMGVVTIGLSMGP
GIALSASFGYLWSNLHFVIPLLLLGIGVDDMFIMLKAWNIVLADPRLQSLTIEQKSGTVL
KSAGVSITVTSITDLVVFAVGATSSMTVLQSFSLYTSLCILFLFLLQVYVSTLLIHLTLF
ISF*

Nucleotide sequence

Length: 3,926

>Mooccu.CG.ELv1_2.S519575.g28770.02.t
TTTTTTTATTTTGAATCTTATATTACACCTCAGCTTTAACAGTTCCGCGACAGTTATACT
AGGTCGCATGCGTGAGGTTTGAGCTCTTTGGTTTGAGGTGGTAACAGCGATAAACGTTAA
TAGTCCAAAGACTAATTACATTGAACTATGGAAAAAAATGATAATTCGGAAATAAAGATC
ATGAAAGCAAAGCTACTGAATGCATGGAAAAATACAGGATATTTAAGCTTTGCGGGATTT
ATTGTTGGGATTTTCGTGATCACAGCATTCATTCCGCTCACGGTGATGGTTATCATGGAT
AAACTTGATCTCAATGAACTTGCAACCCACAGACAAAGTTTGAAAAGCACCGCAAATTGG
TGTGTTGGAATTGGTCTGGCAACATCTTTCGTACATATCATTGGTTGCTTTTCAATTATT
ATACGAACCAAAAAACTACTTGTGGTGAGTCTTGTGTTTGTATGTGTTCACTTCGTGTGT
ATATTTGGCTTCATGGTAGCAGGAATCGTAGATTCTGGAACTCATAAAGAATTCATGCGA
ACAAACTGGAACAATTTGCGCTTGGTCACAAAGGCAATGGTCCAAAAACACTTTTCGTGT
TGTGGATTTGACGGTCCAAATGATACTTTGACAAAAGATGCATCTTGTTACGCGATTCAG
TCAGAGCAGATCACTTGGCCAAGTGGGTGTTACGGTAGAGTTATGTCCACACAACTCCCT
GCACCATCAGTTATAAATTCACGTAACGAAGAAGTTATTCCTGGTAACGCATCTTGGAAT
AACTTCATTTGTGCTTTTGCTTTCTTCTTCATTCTTCTCATCATTGTTGATCTCCTCAAT
ATCTTGGCCATGATATATCTCATGAAAATAACTGACTTCACCAAAGTGAGGAATTGCTCA
ACGACAAAGCTTGTAAATTTAAAGGAAAATCGTAAATCAACTGTAACTACCGTTACTGTG
GTCCTCGAAGAAGAGGTTGAAATAGAAGAAGAAAACACAAACAAATCTTCACCAGAGAAA
AATAGTTTCTCGGACACTCGGTCTTCCAACAGTGGAAGTTCTAAGATACCTTGGTATGCC
ATACCGTCACATTACTTCACACTATATTTGGAAAATTTATTCTACTGGATTGGATTTATC
GTAGGAAAGCATCCCAAAAACACAATAGTTTTATCTCTCATATTTTCAGTTGTGGTGTCA
ATTGGGCTGCTTCAACGAAAAGATGGCGGTGGTGGATTGGAAAATTATCTTGCAAAAGAT
AGTCAAGCCATCAAAAACGCAGACATAGTTTCGAATTATTTCGGTCTTCATGGATACCAT
ATGATGATCATAGAAAATGAAAATGTTATATCAAACGACTCATTCCAAAAGTCATGGAAA
ATAGACAAAAGAGTTAAGTCCTTAACGTCTTCAACTCAAATGACCTTTGATACGGTGTGT
TTGAAATACGGTGATACCTGTGGACAGAACAGCTTGTTCGAATTATGGGGCTACAGTGAT
CCTGTCATTTCGACATTGACGGACGAAGAAATAATGCAGAAAATCAACCCCAAAGCTTCT
ATACAAAGTCCCATGTTTGGTGGAACATACCCGATCGATACAATTATTGGTGGACAGAAT
GTGAGTTCATCGGGAGAAATAGCGTCCGCTAAAGCTCACAAACTTGTATTCATTACAGAG
GAAAATGCTGATATTGCAGATTGGGAAAAGAAGTTAATCGAATTTTCATTATCCAGTCCA
GAAGGTCTGAAAGTGTACGTTCAAGCGTCCTCAAGTTTCGTCGATGAAAACACAAAAACG
CAAACTGGAGAAATTTATCTTTTGGCTATTGGATTTCCACTTGTGTTTATCTACATATCA
GTCATGTCGGGGAAGATTTCCAAACTCAGACATCGAACATGGCTGGCAATAATGGGTGTT
GTGACCATTGGTTTATCTATGGGTCCTGGAATAGCACTCAGTGCATCGTTTGGATATTTA
TGGAGTAATCTTCACTTTGTTATCCCTCTTCTACTCCTGGGTATAGGAGTAGATGACATG
TTTATTATGCTTAAAGCATGGAACATTGTCCTTGCTGATCCGAGACTTCAATCTTTAACA
ATTGAACAAAAATCTGGAACAGTATTGAAAAGTGCTGGAGTTTCGATTACGGTTACATCA
ATTACAGACCTTGTGGTGTTCGCAGTTGGCGCTACAAGTTCAATGACTGTTCTGCAAAGT
TTCAGTTTATACACATCGTTATGCATACTTTTCCTCTTTCTGTTGCAGGTATACGTTTCA
ACACTTCTCATTCATCTGACTTTGTTCATTTCATTTTAGTGCACCTTTTACATGTCCTGC
ATCGTATTGGATCAAAAACGACGTGATGCGAACAGAGATGCATGCATCTGCTGCCATAAA
TACGACGATAGTTATAAGGAAGGACGATGTGCTAATCGAGAGTTGCTTCAATGGTTCTTT
GATAACATCCTGGGTTTGGTGCTAGAGTACAAGTTTGTAAGATTTTTTGTGATTGTGGTT
TCATTGGCTGTGGCTGGACTGATGTCGTGGGCATGCTACAAACTTCCATCCGAATTTGAT
TCAACTTATTACATACCAAGTGGCAGTTATGTCCGAGACTTCATAACAAAGGATCGTGAG
TATTTCACTCAAGGTTATGGAGCAGATGTGTATGTTGTCAGTGACGATCTTTACCAAGAA
AGAAGCAAGTTGGTTCAACTGCAAAATACAATGCTCAGCAATGAAGGTGTCAATAGTGAA
TTTATCAGGAGTTGGTACGAGGCATACGAAAATTGGTCGGGTAAAGCGACAGTAACCACC
GATGAGGAATTTTACGCAGATGTCTCAAAGTTTCTTAATGTAACGGATGGATTGCAATAC
AAATATGATGTTGCATTTAACGACCAACAAAAAATTATTGGCTGCAAACTTCCATTTCAA
CATGTTGATGATGACGTTGCTATGAACAATGTTCGACATATGAACAGCATCCAAAAAGAT
GTAAAAGCTATCAATTTTAGCAAGGATGCATTCGCCTTTTCAGAGGGCTATTACATACTG
GAACTGACTGAATTGATAGACAACGAAGTATATCGAAGCCTTGCTATTTCAATCGCTGCA
GTATTCCTACTTGTTTTGACGACATTGGCAAATTTACAAATGGCATTTTGGGTTGCCCTT
TCTGTTGTAATGACAATGGTAGAAGTGGCTGGGTGCATGTATTTTGCTGGTAGGCTATCA
GGATTTAGGCCAATTCGGCATCTTGCTTTTGCATAAGCTTGTTTTTTTGTAGATATATAC
ATCGAAACAACGCTGGAAATTGTCCTAATTCTGTCAGTAGGACTCGCTATTGATTATGCT
GCCCATGTGGGGCACAAGTTCCTAACTTTAAAAGGAACACGAGAAGTGCGTGTTCGTACA
ACTTTGAGCCATGTAGGACCAGCTGTATTCAATGGAGGATTTAGCACGTTTTTAGCGTTG
GTTGCATTTTCAATTTCTTCCATCTACGCATACAAAGTGTTTTTTACGGCGTTTGTGTGT
GTGATCAGTTTTGGCTTATGGAACGGTTTGGTCTTTCTTCCGAGCATACTCGCATTTATT
GGGCCATCACCATATAACACCGCCACGGAAATATTTGTGGATGGGAGATTACAAGACAAG
AAAATTTTAGGCCAATTTTTAAAGAATCCTAAAAAGATCTCAATGCAAAGAACATAAGTT
ATAGGCTACACTGACTGAATGAATTCCTGATGAAGGGCGCGAGCCCGAAAGCTCGAATCT
CAAAATTGTTATAATTTTTTTTTCTGCAAAAGTTTTGGTAGTCGTCATCTGGCAGCATCA
CACATCAAATGTAGCCTACTGGACGAATGGCCTATATATATAATATTATATTAACAACTT
CCTTTTATGATTTAGTGCCAAAAACG

InterProScan

Pfam
Tetraspanin/Peripherin (IPR018499) - T[81-235] 5.0E-9
SUPERFAMILY
Tetraspanin_EC2_sf (IPR008952) - T[179-236] 9.68E-5
Pfam
Ptc/Disp (IPR003392) - T[447-1074] 7.8E-47 - T[1107-1199] 5.3E-18
ProSiteProfiles
SSD (IPR000731) - T[604-766] 28.488 - T[1017-1199] 8.764

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NPC1_HUMAN 30 % 92.8 2.88E-19