Aniseed - Transcript Card

Transcript Model

Transcript Id

Mooccu.CG.ELv1_2.S685088.g42900.01.t

Possible name(s)

LOXL2; LOXL3; LOXL4

Gene model

Mooccu.CG.ELv1_2.S685088.g42900

Location

S685088 [20,115 / 22,834]

Sequences

Amino acid sequence

Length: 269

>Mooccu.CG.ELv1_2.S685088.g42900.01.p
MTGAKCSGDEIALQFCEHDGKRLSKCGDPRNSAAPFAGVICTTAAPDLIMGVHLLQQTIH
LDHRELNLLRCAAEEECLSDSARDVDWYSFGFRRLLRFSSQIWNRGRDDFRPLRTPDQWE
WHSCHGHYHSMAEFTHYDIVDLNNTKMAQGHKASFCLEDSECDPDVSKRYDCDQPGGGTQ
GIAVGCADTYAYNIDCQWIDVTDLAAGNYVLRIKVNPNSLVPESDFKNNEVVCNMQFKLQ
QVWVWNCHIRDDFDRKTLQKFYSPSIYP*

Nucleotide sequence

Length: 1,371

>Mooccu.CG.ELv1_2.S685088.g42900.01.t
TAGATCCGATTAGCTGGAGGTCGCAATCCGTTGGAGGGCAGAGTAGAGGTGCAATTTGGC
CGTCACTGGGGGGCAGTATGCAGCGATGGATGGACAGCCAAGGAAGCTGCTGTCGTTTGC
AGACAGTTGGGACTTGGATATGCTTTACATGCATTAAAGGATGTTTGGTATTACCCAGGC
AGCAATCAGTCCGAGGGTCTCATAATGACCGGGGCGAAATGCAGTGGTGATGAAATTGCT
CTGCAGTTTTGCGAACATGATGGAAAGCGACTTTCAAAATGCGGTGATCCTCGTAATTCT
GCGGCTCCATTTGCTGGAGTAATTTGCACGACAGCTGCTCCTGATTTAATCATGGGTGTT
CATCTGCTGCAGCAAACCATCCATTTGGACCATAGAGAACTTAACTTGCTCCGATGTGCA
GCTGAAGAAGAGTGCCTTTCGGACTCAGCACGTGACGTAGATTGGTATTCTTTCGGTTTT
AGACGACTACTTCGTTTTTCTTCTCAAATATGGAACCGTGGTCGCGATGATTTTCGGCCA
TTACgaacccctgaccagtgggaatggcatagctgccacggtcattatcacagcatggca
gagtttacacattacgacatcgtggatttaaataatacgaaaatggcgcaaggtcacaaa
gcaagcttttgtttggaagatagcgaatgtgatcccgatgtctccaaacgATATGATTGC
GATCAGCCTGGAGGTGGAACGCAAGGCATTGCGGTAGGATGTGCTGATACATACGCATAT
AACATCGACTGCCAGTGGATTGATGTGACGGATTTGGCAGCGGGAAATTATGTACTGAGG
ATAAAAGTTAACCCGAACAGTTTGGTTCCAGAATCCGACTTCAAAAATAACGAAGTTGTC
TGCAACATGCAGTTCAAACTACAACAAGTGTGGGTGTGGAATTGTCATATAAGAGATGAT
TTTGATCGAAAAACTCTTCAAAAGTTCTACAGTCCTTCAATTTATCCATAACCATAATAT
CAGTTCTTCACCGACGCATTATACCAGCGAAACGTCAGCAATTCTTCAAATGTTTAGCGG
GGATTATAACTGATTGTGTTGCTATTACTTCAAGTATTATATTTGATTGACTTTATTACA
ATATTATGTAACAACTTATCTTTCGATGCTACTCAGACGAGGAGATTATTTATTGTTATC
ATCTGTTCGTACCATCCTGTAACGATGTCTAAAAATGGAAGCTGAGTTGTTTGGAGAAAG
TATCACGTGATTTGATGAAAGAGCTATTTGAATTAACTTTGAATTTAATGCCTTAAAAGC
ATTGGCTAAATTATCTTCTTTATTGTAATTGAAAAATTCTCGAAATTTCTA

InterProScan

Gene3D	SRCR-like_dom_sf (IPR036772) - T[1-115] 4.8E-27
ProSiteProfiles	SRCR (IPR001190) - T[2-110] 25.34
PRINTS	SRCR (IPR001190) - T[2-18] 1.6E-11 - T[21-32] 1.6E-11 - T[36-46] 1.6E-11 - T[70-84] 1.6E-11
SMART	SRCR-like_dom (IPR017448) - T[2-110] 1.7E-30
SUPERFAMILY	SRCR-like_dom_sf (IPR036772) - T[2-115] 1.29E-26
Pfam	SRCR (IPR001190) - T[6-109] 7.5E-21
ProSitePatterns	SRCR (IPR001190) - T[7-44] .
Pfam	Lysyl_oxidase (IPR001695) - T[114-317] 1.1E-88
PRINTS	Lysyl_oxidase (IPR001695) - T[123-147] 5.2E-39 - T[148-168] 5.2E-39 - T[169-190] 5.2E-39 - T[191-211] 5.2E-39 - T[241-263] 5.2E-39 - T[264-283] 5.2E-39 - T[284-301] 5.2E-39

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LOXL2_HUMAN	49.042 %	270	1.69E-85
LOXL3_HUMAN	52.107 %	279	5.52E-89
LOXL4_HUMAN	49.802 %	261	3.13E-82