- Transcript 'Mooccu.CG.ELv1_2.S70...'
Transcript Model
Transcript Id
Mooccu.CG.ELv1_2.S709548.g45735.01.t
Possible name(s)
NR1D1; RORA; RORB
Gene model
Location
S709548 [15,404 / 19,422]
Amino acid sequence
Length: 710
>Mooccu.CG.ELv1_2.S709548.g45735.01.p
GDKSSGIHYGVITCEGCKGFFRRSQQNNSSYSCPRHGNCVIDRSNRNRCQHCRLQKCLRM
GMSRDAVKFGRMSKKQRDRLYMEVVKHQQSNAQSETTDGFQESLQQMPIHPSSISPPVVN
NNFQPTDRHEPPVYRPESNQMPTLPEGHNFHVMTSLPSTMPQHYMQIHPPMMTEFADVQN
PACSLPDNRQRLVSNDVMQVSPEQNGLGDQHKSDDELTTSSPTPIYEEPELTEDFVENVT
LSFNNTKTRSSDEITAIFNREETELEDFSNMEQKDAWVLCATKITEAIQNVVEFAKHIQV
FMDLEQSEQIVLLKSGSLEVVLLRMCQSFNPSTGHVIFMDKMASKEQFQKLGNNELVSSV
FEFGQKISEMHLDDESFALLSCAVLVNSERPGLKNPEKINFLQRKILRLLHDRLRLTHPN
DLLILNKITKQLSNLRTIYNMHLSFCQEIKRKEELIDFPPLYKELFLLDDASAQPPIDDP
APVQYFKPEHHDFRIDVPDKNGMERFELKQGQNYYNGERNTSGSSALTSDSGCALSSIEA
DDPVMSLANGLSKEARSRMSSLHSSETYSPLLPDNGGMESSPPLPTGDYNSIDGYYRRIS
IAGDSGCERDSPMHQPIDLSHVMPSVTKLVCKTEAGEEFSRNDSLKNVTNMRYQVPLTML
APVTSASPMQPTDMRYSPNFTNHSQHSENIQTMSSEYDAKMRNIYSNYQ*
Nucleotide sequence
Length: 2,635
>Mooccu.CG.ELv1_2.S709548.g45735.01.t
GGTGACAAGTCATCAGGGATTCATTATGGCGTCATCACGTGCGAAGGATGCAAGGGATTC
TTCAGAAGAAGCCAACAGAACAACTCATCCTACTCATGTCCAAGACATGGCAACTGCGTC
ATCGATCGTAGCAACCGGAACCGGTGCCAGCACTGTCGTCTGCAAAAGTGCCTTCGTATG
GGGATGTCCAGGGACGCTGTGAAGTTTGGACGGATGTCGAAGAAACAGCGTGATCGTCTG
TACATGGAAGTCGTCAAGCATCAGCAGAGCAACGCACAGAGTGAAACGACTGACGGCTTC
CAGGAGAGCTTACAACAGATGCCAATACATCCTTCTAGCATCTCCCCACCTGTTGTCAAC
AATAACTTTCAACCTACCGACCGACACGAGCCACCAGTATACCGACCTGAAAGCAACCAA
ATGCCAACGCTACCAGAAGGTCACAATTTCCACGTCATGACCTCGCTACCAAGTACAATG
CCACAACATTACATGCAAATCCACCCACCAATGATGACCGAATTTGCTGATGTTCAAAAT
CCCGCATGCAGTTTACCGGACAACCGACAACGACTGGTCAGTAATGACGTCATGCAGGTG
TCCCCGGAACAAAACGGTTTGGGTGACCAACACAAGTCTGACGATGAGTTGACCACTTCA
TCCCCTACACCAATTTACGAAGAGCCTGAATTGACTGAAGACTTCGTTGAAAATGTCACG
TTATCATTTAACAACACAAAAACGCGAAGTAGCGATGAAATAACTGCCATATTCAATCGA
GAAGAAACGGAATTGGAGGATTTTTCTAATATGGAACAAAAAGATGCTTGGGTTTTATGT
GCTACCAAAATAACTGAAGCCATCCAAAATGTCGTTGAATTTGCTAAACATATTCAAGTT
TTCATGGACTTGGAACAAAGTGAACAAATCGTTCTGTTGAAGTCAGGAAGCCTTGAAGTT
GTTCTTTTACGTATGTGTCAATCTTTTAACCCAAGCACAGGTCACGTGATCTTCATGGAC
AAAATGGCAAGCAAGGAGCAATTTCAAAAACTTGGAAATAACGAGCTGGTCTCGTCAGTT
TTTGAATTTGGACAGAAGATTTCGGAAATGCATCTCGATGACGAATCATTTGCTTTATTA
TCGTGTGCGGTGCTTGTCAATAGCGAGCGACCGGGTTTGAAAAATCCAGAAAAAATCAAT
TTCTTGCAAAGAAAAATATTACGACTTCTCCACGATCGCCTGCGTCTGACGCATCCAAAC
GACCTGCTTATTCTAAATAAGATTACAAAACAACTGTCGAATTTGCGGACAATCTACAAT
ATGCACTTATCTTTCTGTCAAGAGATTAAACGAAAGGAAGAATTAATTGATTTTCCTCCA
CTGTACAAAGAATTGTTTCTGCTAGATGACGCTAGTGCACAACCACCGATTGATGATCCA
GCACCTGTGCAATATTTTAAACCTGAACATCATGATTTCCGAATAGATGTTCCGGACAAG
AATGGGATGGAACGTTTTGAATTGAAGCAAGGCCAAAACTATTACAATGGTGAAAGAAAT
ACATCGGGCAGTTCGGCTTTGACAAGCGACAGCGGCTGCGCATTGAGCTCTATAGAAGCA
GATGACCCTGTGATGTCTCTTGCTAATGGACTTTCAAAGGAAGCCAGAAGTCGAATGTCC
AGTCTTCATTCTTCAGAGACATATTCACCACTTCTACCGGACAATGGGGGCATGGAAAGT
TCACCACCACTGCCCACTGGCGATTACAATTCCATAGATGGATACTATCGCAGGATAAGC
ATCGCAGGCGACAGTGGGTGTGAACGGGACAGTCCCATGCATCAACCAATAGACTTATCC
CATGTCATGCCAAGCGTGACGAAGCTTGTCTGTAAGACAGAAGCAGGAGAAGAATTCTCC
AGAAACGACTCTTTAAAAAATGTTACCAATATGCGGTACCAAGTACCACTGACCATGCTG
GCACCGGTCACCAGTGCTTCACCAATGCAACCCACAGATATGCGTTATTCTCCCAATTTT
ACAAATCATTCCCAGCACTCGGAAAATATACAGACTATGTCGTCAGAATACGACGCTAAA
ATGCGAAATATTTATTCTAACTATCAATAAATGTGCCTTAACGTACTGTATATTAATATT
CCACTGTCATTTATCTCGGTACCTTTGATTTCATGTAGCGTGGCTACTGCTTTACACTAA
TGCATTGTGACACCTGGTGGGTGCTTTTATAGCGACCCTGTGCAATCCTAATTTACCTCC
GAATGCAAAACACCAAGGAAATTGAATTTCTGTGCAACATCACTGTGACACATGTGTTGC
GCGGTTGTAAAGCGCCTTTACACAAACACAATTAAGTATGAAATGCTTCTATGCATCACG
ATGCAAATATTGCCATTATTTAACGATTGCAATAATTCCGTCGATATAAATAATATAATT
TTAATAAACATAACATCTTATGCTTCATTTCTTATACAGAGGATTTTTCATGGATAATAT
ACTTATGTTTATTAGGCTATATCAATAAACATAATAATATTTATACAATGAAGTAGGCAA
GCACAAAAGACCACATTATTGGTCCAAGACATCGAAGAGTATAGACAACTCTTAT
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[1-64] 1.4E-28 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[1-98] 4.1E-30 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[1-69] 18.335 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[1-65] 3.1E-30 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[13-28] 4.0E-9 - T[46-54] 4.0E-9 - T[54-62] 4.0E-9 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[44-78] 3.93E-51 - T[154-181] 3.93E-51 - T[268-466] 3.93E-51 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[58-68] 3.4E-19 - T[283-304] 3.4E-19 - T[304-320] 3.4E-19 - T[370-385] 3.4E-19 - T[427-444] 3.4E-19 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[280-301] 1.9E-9 - T[306-325] 1.9E-9 - T[370-392] 1.9E-9 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[282-439] 2.0E-26 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[286-444] 4.3E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORB_HUMAN | 40.787 % | 305 | 3.45E-96 |
| RORA_HUMAN | 40.041 % | 308 | 7.18E-97 |
| NR1D1_HUMAN | 31.772 % | 194 | 1.81E-53 |