- Transcript 'Cisavi.CG.ENS81.R15....' >
- Transcript 'Moocci.CG.ELv1_2.S64...' >
- Region 'REG00000816' >
- Clone 'cima816300' >
- Transcript 'Mooccu.CG.ELv1_2.S72...'
Transcript Model
Transcript Id
Mooccu.CG.ELv1_2.S725399.g47818.01.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
S725399 [910 / 9,196]
Amino acid sequence
Length: 929
>Mooccu.CG.ELv1_2.S725399.g47818.01.p
MPLRLDIKRKLNARSDRVKCVDLHPTEDWLLVSLYNGNVHIWNTESQTLVKSFEVCDLPV
RAARFVPRKNWVVTGSDDMQIRVFNYNTLERVHLFEAHTDYIRSIAVHPTQPYLLTSSDD
MMIKLWDWDKKWSCTQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSTTPNFT
LEGHLKGVNCVDYFTGGDKPYLISGADDHLVKIWDYQNKTCVQTLDGHAQNVVCVSFHPE
LPIIMTGSEDGTVKIWHANTYRLETTLNYGMERVWCVAALKGSNNIAFGYDEGSIMIKLG
REEPAISMDSSGKIIWAKHSEIQQANLKALGDYEIKDGERLQLAVKDMGSCEVYPQNISH
NSNGRFVVVCGDGEYIIYTAMALRNKAFGSALEFIWATDSNEYAVRESGTTIKLFKNFKE
RSTFKPDFGCDNIYGGSLMGVRTSQGLAFYDWEKLELIRRIEIAPKNIFWSDNGDLLCIA
GEDSFFILKFDQEKVVEAEDNKDLISEDGIEDTFNVLAEIEEVVKTGIWVGDCFIYTNSV
NRLNYYVGGEIVTIAHLDRTLYLLGYIPKDNRLYLGDKELNVMSYSLLLSVLEYQTAVMR
KDFETADKVLPSVPKEHRTRVAHFLEKQGFKVQAMAVTVDPEHKFELALGLGDLKVAYEL
AKEAQAEQKWKQLAELATSKCEFTLAQECLHNAQDFGGLLLLATSAGNDKMVKTLASDAE
ESGKNNVAFMSYFITGQLEKCLELLVNTKRLPEAAFFARTYMPSQISRIVGLWKADLATT
NKKASDSLANPDQYENLFPGLAESKVAENFLEATEVRRPASHYPQTPSNDERNILEEAAG
FKSRDQSEPVDEPEVVPEEAVLLEPEDEGKCEQKSDETPQETISEQELTTQEGADLDQKD
LELDIDNLEIDENIDTSDINLDDDFLED*
Nucleotide sequence
Length: 3,163
>Mooccu.CG.ELv1_2.S725399.g47818.01.t
GTCAATTTCTAAACATGAAGTCAACAGTAGTCAGTGAGTCATAAGTTTTGAATTATTAAA
ATTATCGCGAGTCTAAAAACTTTTGACTATTCCTATTTGGAGCACATAAGAAAATCTTTC
CTTTCCCATATATACCGGTTTTGCCGTCTATGGTTTTGCCAATCTATGGGAATGTGACGT
CACTTTTTATGTTTTGGACACGGCATAAGTTCCAACTCAGCAGGTTGAGAATTTTGCTAA
ACTGTAAAAAATAAGCATTAACGGCAAGGAAATTTGACAGATAAAATGCCACTTCGTTTG
GATATTAAAAGGAAGCTTAATGCTCGTTCAGATCGTGTGAAATGTGTCGATTTGCACCCA
ACAGAAGACTGGCTTCTTGTGTCTTTATACAATGGAAACGTACATATTTGGAACACGGAA
TCACAGACACTCGTAAAATCCTTTGAAGTATGTGACCTTCCCGTCAGAGCAGCAAGATTT
GTTCCGCGGAAGAACTGGGTTGTCACAGGATCAGACGATATGCAAATTCGTGTTTTTAAC
TACAACACATTGGAACGAGTTCATTTGTTCGAAGCTCACACAGATTATATTCGATCGATT
GCCGTTCACCCGACCCAACCTTACCTTCTCACAAGCAGTGATGACATGATGATCAAGCTG
TGGGACTGGGACAAGAAGTGGTCATGTACACAAGTGTTTGAAGGACATACTCATTATGTC
ATGCAAATAGTTATAAATCCAAAGGATAACAATCAATTTGCAAGTGCGTCTCTTGATAGA
ACGATAAAAGTTTGGCAGCTTGGCTCAACGACTCCAAACTTTACGTTGGAAGGCCATTTA
AAAGGTGTGAATTGTGTCGATTACTTCACTGGAGGAGATAAACCTTACTTGATCTCTGGA
GCTGATGATCACCTTGTGAAGATTTGGGATTATCAGAACAAAACTTGCGTTCAAACACTT
GATGGACATGCACAGAATGTCGTATGTGTCTCCTTTCATCCTGAATTACCAATCATAATG
ACCGGATCAGAAGATGGAACGGTAAAAATTTGGCATGCAAACACTTACCGATTGGAGACA
ACATTAAACTATGGAATGGAAAGAGTGTGGTGTGTAGCAGCACTGAAAGGTTCAAACAAC
ATTGCATTTGGTTACGATGAAGGAAGTATAATGATTAAACTCGGTCGCGAAGAACCTGCC
ATTTCTATGGACTCAAGTGGAAAGATTATTTGGGCTAAACATTCTGAAATTCAACAAGCA
AACCTCAAGGCACTTGGAGACTATGAAATAAAAGATGGTGAACGGTTGCAGCTTGCAGTG
AAAGACATGGGAAGTTGTGAAGTGTACCCACAAAATATATCACATAATTCAAATGGAAGG
TTTGTTGTGGTTTGTGGGGATGGAGAATATATCATATACACAGCCATGGCACTTCGAAAT
AAAGCTTTTGGCTCTGCACTGGAGTTTATCTGGGCCACAGATTCCAATGAATATGCTGTG
AGGGAAAGCGGCACAACAATAAAACTCTTTAAAAACTTCAAAGAACGTTCCACATTTAAA
CCAGACTTTGGTTGTGATAATATCTACGGAGGTTCTCTTATGGGTGTCAGAACGTCACAA
GGACTCGCTTTCTACGACTGGGAAAAATTAGAACTTATTCGAAGAATTGAAATTGCACCT
AAAAATATTTTCTGGTCGGACAACGGCGATCTTCTCTGTATTGCCGGGGAAGATTCTTTC
TTCATCTTGAAATTTGACCAGGAGAAAGTTGTGGAAGCTGAAGATAACAAAGATTTGATT
TCAGAAGATGGAATTGAAGACACATTTAATGTATTAGCGGAAATTGAAGAAGTGGTCAAG
ACTGGCATTTGGGTTGGTGACTGTTTTATTTACACCAACTCTGTCAATCGTTTGAACTAC
TATGTTGGAGGCGAAATTGTGACCATTGCTCATCTGGACAGAACACTGTATTTACTTGGA
TACATTCCTAAAGACAACCGACTTTACCTTGGAGACAAAGAGCTCAATGTGATGAGCTAC
TCTCTGCTGCTATCAGTGCTTGAATATCAAACTGCAGTCATGCGAAAAGATTTTGAAACT
GCTGATAAAGTCCTTCCATCCGTCCCGAAAGAACACAGAACACGAGTCGCTCATTTTCTC
GAGAAACAAGGTTTTAAAGTACAAGCGATGGCAGTCACTGTTGATCCGGAACATAAGTTC
GAACTTGCTCTTGGCCTTGGTGATTTGAAAGTTGCTTACGAACTTGCTAAAGAAGCTCAG
GCTGAGCAGAAATGGAAACAACTTGCTGAACTTGCTACTTCGAAATGTGAGTTCACGTTG
GCACAAGAATGTCTTCACAATGCACAAGATTTTGGTGGATTGTTGCTATTGGCAACAAGT
GCTGGTAACGATAAAATGGTGAAGACGCTGGCGTCAGATGCCGAGGAATCGGGGAAAAAC
AATGTTGCATTCATGTCCTACTTCATTACTGGACAACTTGAAAAATGTCTTGAACTTCTT
GTCAACACCAAGAGACTACCTGAAGCAGCTTTCTTTGCACGAACTTACATGCCCAGCCAA
ATATCACGTATCGTTGGATTGTGGAAAGCTGATCTGGCAACGACGAATAAGAAAGCTTCA
GACTCCCTTGCAAATCCGGACCAATACGAGAATTTATTTCCCGGACTCGCTGAATCCAAA
GTTGCTGAAAATTTTCTGGAAGCTACTGAAGTGCGACGACCAGCCAGCCATTACCCACAG
ACACCTAGTAATGATGAACGAAATATCCTGGAGGAAGCTGCAGGCTTTAAAAGTCGAGAT
CAATCTGAACCGGTAGATGAACCTGAAGTAGTGCCCGAAGAAGCTGTCCTCTTGGAGCCG
GAGGATGAGGGAAAATGTGAACAGAAGTCGGATGAAACACCACAGGAAACGATATCTGAA
CAAGAATTGACTACACAAGAAGGAGCAGACTTGGATCAAAAGGACCTCGAGCTGGACATA
GACAACCTTGAAATTGATGAAAATATAGACACTTCTGATATCAATTTGGATGATGACTTT
CTAGAAGATTGAATGCCATGTTTGCTTGCAAAACGATAATGCTACAAAGTTTCTTATTTA
TTGTGGGCACTTTTATTGGCTTTGTAGTGTGATATATCCTTGT
| PIRSF |
COPB2 (IPR016453) - T[97-986] 0.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[98-392] 6.92E-83 - T[322-404] 5.13E-16 - T[439-588] 5.13E-16 - T[617-659] 5.13E-16 |
| SMART |
WD40_repeat (IPR001680) - T[99-138] 0.026 - T[141-180] 0.0022 - T[183-222] 4.7E-9 - T[226-266] 1.7E-8 - T[269-310] 7.1E-7 - T[313-352] 3.7E-10 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[106-395] 2.8E-110 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[106-361] 51.939 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[106-147] 9.773 - T[190-222] 13.85 - T[233-275] 12.146 - T[276-319] 12.113 - T[320-361] 16.022 |
| Pfam |
WD40_repeat (IPR001680) - T[111-138] 0.1 - T[155-180] 0.1 - T[187-222] 1.5E-5 - T[227-265] 0.0024 - T[273-310] 2.0E-6 - T[315-351] 8.4E-9 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[209-223] 1.1E-5 - T[253-267] 1.1E-5 - T[297-311] 1.1E-5 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[414-857] 4.6E-171 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 26.185 % | 257 | 1.5E-71 |
| COPB2_HUMAN | 72.581 % | 1443 | 0 |
| LIS1_HUMAN | 25.556 % | 111 | 6.82E-26 |