- Transcript 'Moocul.CG.ELv1_2.S10...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S103512.g09633.01.t
Possible name(s)
PCDH17; PCDH18; PCDHGC4
Gene model
Location
S103512 [15,984 / 24,688]
Amino acid sequence
Length: 1,120
>Moocul.CG.ELv1_2.S103512.g09633.01.p
MFFGRCMKMWLTKLLLISIVTSQLLHNVNSKAASLRMSFKENEEKGTLVANLYQLFNIQS
SLKHARYFQMLSQRLMVGNQLVTDQGHWIVLNTDNGHLEVSDHLDRERDCGNEPEVDCVI
ELEVALLPNEHFRIMHFDFWVADDNDHAPKFPEIAFGDKFSVDVPEDSSIGTTVSLDHFM
ATDDDSGQNAEIYYTLEQNDYFGIEQYDDTIGTSHVDLVVIKEPDFETKRSFELSFELYL
TARDSGEPSRKTQRHLLIKIIDKNDHSPIFEKKEYSLDLKENLPAGTLIYTLLARDADYG
FLGEITYFIPKKGNSKEARDLLTIQPETGELRLKKELDREKHNGIRVVIGAKDGGTRSDG
GAKVGKTILVISVEDVNDNDPVIHVNIVLNGPKKDNAYVPEDAKRGIFIAHITASDADTE
ANGEVDISMKTYPVDDAFELEDNLVKITSSLDREIHSEYTLELKACDHGKSPRCSKKNVT
VIIVDINDHYPQFVADKRNFVIPENREIGTLLTHVQALDKDALNLPALTKTRNNEFVPSS
NGAIRFSMIGGKNTFSIEPLTGKITLVGSLDYEETNSYKLIVTARDLGSPRLSNKTTITV
TVLDVNDHRPEFSNPALDNSTLVATILDTGAIAVIKATDSGIPPLSSTTAIYIRVTDLSL
SEIRENYGTKIAGLEPSIILLVSLAAATVVLLAILAFIIVKCKRESKEIRTYSCRNAESK
KSWISKGSTTPPRHSMIDEVVVVTSPNNVTSMRDENFMRSMEIGRKNTLKSSCSNSHSNA
LKDLANMEDGRMSAFSSRSYGNYKQDMQVRTQTDGDSGKGESDKDSVSGERDNKSVSPPV
SSQYESQSMQYLNNLGPNCTDHCRHLGHSDQCWMNVSATTLNERPSRVSSPRNVDLGYAL
HPIHETYHQNQNNFDNMENIEETQPLHYVLDSNLQPNDYPSYPQYANNTYEDFYYPEMTA
PYNRNSINFSHHNTVPRSMTPPTDYYAPSRASPHHHEHVTSPTTSSTTLKPFHSNPVSPQ
PLDGSYRPPSQRNSVAEIPLENASVGDKIRMFSKSPAPTGVQRKPSNASLRENLLQRRHL
NNTSFSSTHSYPSPPNGYSGETSMQETEEILSNIDQLIIT
Nucleotide sequence
Length: 3,406
>Moocul.CG.ELv1_2.S103512.g09633.01.t
GTTTCTGCAGATTTTTAATGTTTTTTGGTCGTTGCATGAAAATGTGGCTGACAAAGTTAT
TGTTAATATCGATTGTGACGTCACAGCTGTTGCACAATGTGAATTCGAAAGCTGCAAGTT
TGAGGATGTCCTTTAAAGAAAATGAAGAAAAAGGAACGTTGGTCGCGAATTTATACCAAC
TTTTTAACATTCAATCAAGTTTGAAACATGCGAGATATTTTCAAATGTTAAGTCAAAGAT
TGATGGTTGGGAACCAGTTGGTGACAGATCAAGGACATTGGATTGTATTGAACACTGATA
ATGGACACTTGGAAGTGAGCGATCATTTGGACCGTGAGAGAGATTGTGGAAATGAACCTG
AAGTCGATTGTGTTATTGAACTTGAGGTCGCTCTTTTGCCAAACGAACATTTTCGTATCA
TGCATTTCGATTTTTGGGTCGCCGACGACAATGATCACGCTCCAAAATTCCCTGAGATTG
CATTTGGCGATAAATTTTCCGTAGATGTCCCCGAAGATTCGTCAATCGGTACGACAGTTT
CGCTCGATCATTTCATGGCAACGGATGACGACAGCGGACAAAACGCAGAAATTTACTACA
CTCTGGAACAAAACGATTATTTTGGTATTGAACAATATGACGACACAATAGGAACATCAC
ACGTTGATTTAGTCGTCATAAAGGAACCTGATTTTGAAACGAAAAGATCTTTTGAATTAT
CTTTTGAATTGTATTTGACTGCACGCGATTCCGGAGAACCTTCGAGAAAAACACAACGAC
ATCTTCTCATCAAAATTATTGATAAGAACGACCATTCGCCAATATTTGAGAAAAAGGAAT
ATTCGTTGGATTTGAAGGAAAACTTACCGGCGGGAACATTGATATATACGCTGTTGGCTC
GGGATGCTGATTACGGATTTTTGGGAGAAATCACATACTTTATCCCTAAGAAGGGAAACA
GTAAAGAAGCACGTGACCTGCTAACCATTCAACCAGAAACCGGAGAACTTAGATTGAAAA
AGGAACTGGACCGTGAAAAACACAATGGAATTCGTGTTGTGATTGGAGCTAAAGATGGTG
GAACCCGGTCGGATGGTGGCGCTAAAGTGGGAAAAACAATCCTTGTGATCTCCGTTGAAG
ATGTAAATGATAATGATCCTGTAATTCATGTGAATATTGTGCTTAATGGACCGAAGAAAG
ATAATGCTTATGTTCCTGAGGACGCCAAACGTGGCATCTTCATAGCACATATCACAGCAT
CAGACGCCGATACGGAAGCTAATGGCGAGGTTGACATCTCAATGAAAACTTATCCGGTAG
ATGACGCGTTTGAGCTTGAAGATAATTTGGTTAAAATCACGTCATCTTTGGATCGAGAAA
TTCATAGTGAATATACGCTTGAGCTAAAAGCATGCGACCATGGAAAAAGTCCAAGATGCT
CCAAGAAGAATGTGACGGTTATTATAGTGGACATCAATGACCACTACCCACAATTTGTTG
CTGATAAACGAAACTTTGTTATACCTGAAAATAGGGAGATTGGAACTTTATTAACTCACG
TTCAAGCACTCGATAAAGATGCCTTGAATTTGCCAGCTCTCACCAAAACAAGAAACAATG
AATTTGTTCCTTCATCAAACGGAGCGATTCGTTTCTCGATGATCGGAGGAAAGAATACGT
TTTCCATCGAACCTTTAACTGGTAAAATAACGCTCGTTGGTTCATTGGACTACGAAGAAA
CCAACAGTTATAAGCTGATTGTGACAGCCAGAGATCTTGGATCGCCTCGTCTCAGTAACA
AAACAACGATTACAGTCACTGTTCTTGATGTTAATGATCACAGACCGGAGTTCTCCAATC
CAGCTCTTGACAATTCCACTCTCGTGGCAACGATTCTTGATACTGGTGCAATAGCTGTTA
TTAAGGCAACTGATTCTGGAATTCCACCTTTATCGAGTACAACAGCAATTTATATCCGTG
TAACTGATCTTTCACTATCGGAAATCCGAGAAAATTATGGAACGAAAATTGCTGGCTTGG
AGCCGTCTATCATACTTCTTGTTTCATTGGCTGCTGCTACTGTTGTCCTGTTGGCAATTC
TAGCATTTATTATCGTTAAATGCAAACGAGAAAGCAAGGAAATTCGAACATACAGCTGTC
GAAATGCTGAATCAAAGAAGAGTTGGATATCAAAGGGAAGCACCACACCGCCACGTCACA
GTATGATAGATGAAGTAGTAGTTGTGACCTCACCTAATAATGTGACGTCAATGCGTGACG
AGAACTTTATGCGATCGATGGAAATTGGACGAAAGAACACTTTAAAGTCAAGTTGTTCAA
ATTCCCACTCAAACGCTCTTAAAGACCTAGCAAATATGGAAGATGGTAGAATGAGCGCTT
TTTCCTCAAGAAGTTATGGTAACTATAAACAGGACATGCAAGTTCGTACACAGACGGATG
GTGACAGTGGAAAAGGAGAAAGTGACAAAGACAGTGTTTCTGGTGAACGCGATAATAAAT
CTGTATCCCCGCCCGTCTCTTCGCAATATGAATCTCAATCAATGCAATATCTCAACAACT
TGGGACCGAATTGTACTGACCATTGCCGACATCTTGGACACAGTGACCAATGTTGGATGA
ACGTTTCAGCAACGACCCTGAATGAACGACCATCTCGTGTTTCCAGTCCTCGAAATGTGG
ATTTGGGTTATGCCTTGCATCCAATTCATGAAACTTACCACCAAAATCAAAATAATTTTG
ATAATATGGAAAATATTGAAGAAACACAACCTCTGCATTACGTACTGGATTCGAACCTCC
AACCCAACGATTACCCGAGTTATCCACAATACGCAAATAACACATATGAAGATTTTTACT
ACCCTGAAATGACTGCTCCATATAACCGAAACTCAATCAATTTCTCACATCATAATACCG
TACCAAGGTCAATGACCCCACCCACTGATTATTATGCACCCAGTCGAGCATCGCCACATC
ATCATGAACATGTTACGTCACCAACTACGTCATCAACAACTTTGAAACCGTTTCATTCAA
ATCCCGTTTCCCCACAACCGCTAGATGGCAGCTACAGACCACCCAGTCAAAGAAATTCAG
TCGCAGAAATTCCTCTTGAAAATGCATCTGTTGGAGACAAAATTCGAATGTTTTCAAAAT
CTCCAGCGCCCACTGGCGTTCAAAGAAAACCTTCTAATGCTTCTTTGCGCGAAAATTTAC
TTCAACGGCGCCATTTGAACAATACCTCGTTTTCATCCACTCATAGCTATCCATCTCCCC
CTAACGGATACTCTGGAGAAACTTCAATGCAAGAAACTGAAGAAATTCTCTCAAACATTG
ACCAACTAATTATAACGTGATGTCATACGATTGTAACTTAATATTA
| Pfam |
Cadherin_N (IPR013164) - T[36-125] 1.9E-6 |
| PRINTS |
Cadherin (IPR002126) - T[87-106] 8.2E-30 - T[270-299] 8.2E-30 - T[344-356] 8.2E-30 - T[362-381] 8.2E-30 - T[491-504] 8.2E-30 - T[560-586] 8.2E-30 - T[594-611] 8.2E-30 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[146-262] 3.43E-13 - T[258-388] 4.85E-23 - T[376-485] 4.14E-15 - T[481-615] 1.57E-25 |
| Pfam |
Cadherin (IPR002126) - T[160-260] 1.5E-7 - T[275-373] 3.6E-12 - T[396-483] 6.3E-12 - T[499-603] 3.5E-17 |
| SMART |
Cadherin (IPR002126) - T[179-268] 4.2E-15 - T[292-381] 2.0E-17 - T[412-491] 2.2E-16 - T[530-610] 6.4E-24 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[258-268] . - T[371-381] . - T[481-491] . - T[600-610] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 29.911 % | 302 | 6.06E-86 |
| PCD17_HUMAN | 27.844 % | 260 | 1.28E-71 |
| PCDGL_HUMAN | 27.154 % | 241 | 5.44E-66 |