- Clone 'cien54593' >
- Clone 'cien97185' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R107...' >
- Transcript 'Moocul.CG.ELv1_2.S10...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S103611.g09672.01.t
Possible name(s)
RORA; RORB; RORC
Gene model
Location
S103611 [8,636 / 13,609]
Amino acid sequence
Length: 848
>Moocul.CG.ELv1_2.S103611.g09672.01.p
MDVHRHNPYPQNLTLPPYNQSPTMPEHHVQREYEVFHTQQQQQQIQRSSEPPPHYHLPPQ
EMFTNRHPHLPEPEKLHQQQHIYQQNQFRPVAPPRENESWKEINQGRVLTLEELRWRDLY
RNVPARAQIEIIPCKVCGDKSSGIHYGVITCEGCKGFFRRSQQNNSSYSCPRHGNCVIDR
SNRNRCQHCRLQKCLRMGMSRDAVKFGRMSKKQRDRLYMEVVKHQQSNITQSETTDGFQE
SIQQMPRHPSGISPPLVNNNFQPTDRHEPPVYRPDSSQMPQAPEGHNFHVMTSLPSAMPQ
HYMQIHPPMTTDFADVQNPACNLPDNRQRLVSNDVMQVSPEQNDFGDQHKSDDELTTSSP
TQICEEPQLNEDFVENVTLSFNNTKTRNSDEISAIFNREDTEMEDFSKMEQKDAWVLCAT
KITEAIQHVVEFAKHIQVFMDMEQSEQIVLLKSGSLEVVLLRMCQSFDPDTGRVIFMDKM
ATTDQFQKLGNNELVSSVFEFGQKISEMRLDDESFALLSCAVLVNSERPGLKNPEKINFL
QRKILRLLHDRLRLTHPNDMLILNKITKQLTNLRTIYNMHLSFCQEIKRKEELIDFPPLY
KELFLLDDASALPPIHDPSPPVAYFKPEHHDFRFDVPDKNGMERFEMKQGQHSFNGERNT
SGSSALTSDSGCALSSLETDDAAISLANGLSKEARSRMSSLHSSETYSPLLPDNGGMESS
PPLPTGDYNSVDGYYRRISIAGDSGCERDSPMHQPIDLSHVMPSVTKLVCKTETADEFSR
NESLKNVTNMRYQVPLTMLAPVTSASPMQPTDMRYSPTFSNHSQHSENIQTMSSEYDAKI
RNIYSNYQ
Nucleotide sequence
Length: 3,287
>Moocul.CG.ELv1_2.S103611.g09672.01.t
TTGCAATCAGTCGCAGGTAACAACTGTGACGTAATAAAGGTTCGCCGCTGACAAAACAAA
CAAAAGTCCGTCGCATTTTTTCGCAAGTTTTGTAAATGGACGATGTCTACGATTACCTTA
CGCCTCCACTGGAAATCACCAGCGACATTTTTTCTTTAAAATGCAATGACCTAGTTTGAC
CCGTCAGTAGATGGTCATTCAGTTCGAGTTGTTTGTACGTGATTGTTGTGTGCGATCCAC
AGGGAACAGCGATAGTCAGACAGCATTTCTCACGCTGTACATGTGTAAGCTTCATCCGTT
GTTACTCACTATTCATTCTTGCAAGGAATTGTAGACATGCAATAGAAACAATTCATCAGC
AGTCAGTTGCAGTACCTGTTGAGGCAATGGACGTTCACAGGCATAATCCATACCCACAGA
ACCTGACGTTGCCACCGTACAATCAGTCACCTACGATGCCGGAACATCATGTGCAGAGGG
AATATGAAGTCTTCCACACGCAGCAACAACAGCAACAGATTCAAAGAAGCAGCGAACCTC
CGCCTCACTATCATCTTCCTCCTCAAGAGATGTTCACCAATCGTCATCCGCATCTTCCAG
AACCAGAGAAATTGCATCAACAGCAGCACATCTACCAGCAAAACCAGTTCCGTCCCGTTG
CCCCTCCACGTGAAAACGAATCTTGGAAGGAGATTAATCAAGGTCGTGTTTTGACTTTGG
AAGAATTACGTTGGAGAGATTTATATCGAAATGTTCCTGCCAGAGCACAAATTGAAATCA
TCCCTTGCAAAGTGTGTGGTGACAAATCATCAGGGATTCATTATGGCGTCATCACGTGCG
AAGGATGCAAGGGGTTCTTCAGAAGAAGCCAACAGAACAACTCCTCCTACTCATGTCCGA
GGCATGGTAATTGCGTCATCGATCGTAGCAACCGGAACCGGTGCCAGCATTGTCGTCTGC
AAAAGTGCCTTCGTATGGGAATGTCCAGGGACGCTGTGAAGTTTGGACGGATGTCGAAGA
AGCAGCGTGATCGTCTGTACATGGAAGTCGTCAAGCATCAGCAGAGCAACATCACGCAGA
GTGAAACGACTGACGGCTTCCAGGAGAGCATACAACAGATGCCACGACATCCCTCAGGGA
TCTCACCACCTCTCGTCAATAATAACTTTCAACCTACCGACCGGCACGAGCCACCGGTTT
ACCGACCTGACAGCAGCCAAATGCCACAAGCACCGGAAGGTCACAATTTCCACGTCATGA
CATCGCTACCAAGTGCCATGCCACAGCATTACATGCAAATCCACCCACCAATGACGACCG
ACTTTGCTGATGTTCAAAACCCTGCCTGTAATTTACCGGACAATCGACAACGACTGGTCA
GTAATGACGTCATGCAGGTGTCCCCGGAACAAAATGACTTTGGTGACCAGCACAAGTCGG
ACGATGAATTGACCACTTCATCCCCTACACAAATTTGTGAAGAACCACAATTGAATGAGG
ACTTCGTTGAAAATGTCACGTTATCATTTAACAACACAAAGACGAGAAACAGCGATGAAA
TATCAGCCATATTCAATCGAGAAGACACGGAAATGGAGGATTTTTCAAAGATGGAACAAA
AAGATGCTTGGGTTTTGTGTGCAACAAAAATCACTGAAGCTATCCAACATGTCGTTGAAT
TTGCCAAACATATCCAAGTGTTCATGGACATGGAACAAAGTGAACAAATCGTATTGTTAA
AGTCAGGAAGCCTCGAAGTTGTTCTTTTACGAATGTGTCAGTCTTTCGATCCAGACACAG
GACGCGTGATTTTCATGGACAAAATGGCAACCACGGATCAATTTCAAAAACTTGGAAATA
ACGAATTAGTCTCGTCAGTTTTTGAATTTGGGCAGAAGATTTCGGAAATGCGACTCGATG
ACGAATCATTTGCTCTTTTATCGTGTGCGGTGCTTGTCAATAGCGAGCGACCAGGTTTGA
AAAATCCAGAAAAAATCAATTTCTTGCAAAGAAAAATATTACGACTCCTCCACGACCGCC
TGCGTCTGACGCACCCAAACGATATGCTTATTTTAAATAAGATTACAAAACAACTTACGA
ATTTGCGGACGATCTACAATATGCACTTATCCTTCTGTCAAGAGATTAAACGAAAGGAAG
AACTTATTGATTTTCCTCCACTGTACAAAGAATTGTTTCTGCTAGATGACGCTAGTGCAC
TACCACCGATTCATGATCCTTCCCCGCCTGTGGCATATTTCAAACCAGAACATCACGATT
TCCGATTTGATGTTCCGGACAAGAACGGAATGGAACGATTTGAAATGAAGCAAGGTCAAC
ACAGTTTCAATGGCGAAAGAAATACGTCGGGCAGTTCGGCGTTGACCAGCGACAGTGGTT
GCGCATTGAGCTCTTTAGAAACAGATGATGCTGCGATATCTCTGGCAAATGGACTATCAA
AGGAAGCCAGAAGTCGAATGTCCAGTCTGCATTCCTCAGAGACATATTCACCACTTTTAC
CGGACAATGGAGGCATGGAGAGTTCACCACCACTGCCCACTGGCGATTACAATTCCGTGG
ACGGATACTATCGTAGGATCAGCATCGCTGGAGACAGTGGATGTGAACGGGACAGCCCCA
TGCACCAACCAATAGACTTATCACATGTCATGCCAAGCGTGACGAAACTTGTCTGCAAGA
CAGAAACAGCGGACGAATTCTCCAGAAATGAATCGTTGAAAAATGTGACTAATATGCGGT
ACCAAGTACCACTAACCATGCTGGCACCGGTCACTAGTGCTTCACCAATGCAACCCACAG
ATATGCGTTATTCCCCTACATTCTCAAATCATTCCCAGCACTCAGAAAATATACAGACAA
TGTCGTCGGAATACGACGCTAAAATAAGAAATATTTATTCCAACTATCAGTAAATGTGCC
TTACGTACTGTATTATATTCCACTGTCATATATCTCGGTACCTTTTTCTTCGATGTAGCG
TGGCTACAGTTTACACTAATGCATTGTGACACCTGGTGCTTTTATAGCGACCCTGTGCAA
TCCTATTTTACCTCCGAATGCAAAAACCACACCAAGGAAATTTAATTTCTGTGCAACATC
ACTGTGACACATGTGTTGCACGGTTGCAAAGTGCCTTTACACAAAACACAAGTATGAAAT
GCTACTATGCATCATGATGCAAATATTGCCATTATTTAACGATTGCAATAATTTCGTCTA
TATAAATAATATAAGTTTAATAAACATGGAATCATATTTCTATTTCA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[126-235] 2.2E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[131-206] 20.082 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[131-202] 3.0E-39 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[133-201] 3.8E-32 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[134-160] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[134-150] 6.5E-18 - T[150-165] 6.5E-18 - T[183-191] 6.5E-18 - T[191-199] 6.5E-18 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[195-205] 1.1E-18 - T[421-442] 1.1E-18 - T[442-458] 1.1E-18 - T[508-523] 1.1E-18 - T[565-582] 1.1E-18 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[394-604] 1.57E-51 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[418-439] 2.3E-9 - T[444-463] 2.3E-9 - T[508-530] 2.3E-9 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[420-577] 8.3E-26 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[424-582] 1.6E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORG_HUMAN | 37.795 % | 305 | 3.46E-94 |
| RORB_HUMAN | 72.059 % | 205 | 8.03E-58 |
| RORA_HUMAN | 41.718 % | 328 | 4.92E-103 |