- Transcript 'KH2012:KH.L112.2.v3....' >
- Clone 'cima825979' >
- Transcript 'KH2012:KH.C3.502.v2....' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Moocul.CG.ELv1_2.S10...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S103735.g09697.01.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
S103735 [2,954 / 25,218]
Amino acid sequence
Length: 1,756
>Moocul.CG.ELv1_2.S103735.g09697.01.p
MMENSKLMFLLLVLVSLTQVINAQYKKEEGPCGGRDCTNLGPCAQCISEKGRRGLPGIPG
QTGPIGPAGMVGPQGLIGPKGQKGYAGPQGRMGPRGDKGSRGRNGYPGSNGTPGYQGESG
PRGYPGINGCNGTIGDHGRDGDQGPPGLVGQPGFQGFKGEKGEPAVIRDEDMIKGQPGDF
GPKGPRGRAGPPGPQGQMGPIGLTGRPGPPGPDGRKGESGDQGNQGIGIVGQKGPPGEPG
PAGSPGTGPSPQVGPTPGYQDEPEGEIGEKGEPGRPGQKGPIGQDGDIGMRGQKGMTGMK
GEKGVRGTAGPRGPPGVTGADGFDGRKGEPGMSGFPGQDGVDGMKGARGMSGFPGRSGAP
GLSGLEGTAGPPGLPGQAGLRGESGMAGRDGVNGIPGQFGDDGFPGQDGPPGRPGLPGIG
IKGENGLPGVRGANGIDGAAGLPGLKGATGPRGKDGMSIKGMDGMNGLDGIHGFQGLKGA
RGRPGAPGRLVGPHNITGERGSPGKSGPIGLPGLQGPNGTPGPEGQKGEAGGECECDDAV
GPKGNAGPQGLQGLPGSNGLPGLPGIAGGRGDAGEPGADGILGNDGLRGNTGLPGLPGQK
GDPALFPDGVIGPVGEPGLPGGPGRPGLNGLAGKDGLDGLPGPLGEKGEIGSQGPRGASG
DRGSDGDRGLPGRNGGDGIGFPGQPGDKGEKGQNGYEGLSGENGAKGEPGEVILPRNVVG
EKGQRGPPGHSGLPGLTGDVGQPGIPGVPGFPGKMGGRGDIGPIGPPGQPGPKGFTGQRG
YKGVPGFPGSKGTAGRKGIPGVKGRQGLKGEPGIDGLLGEHGQDGEKGDQGNPGPAGEKG
AVGLEGTPGLSGVRGVKGTPGNDGLIGLPGQFGFKGEKGESALEGHRGREGERGPPGPSG
LQGLPGTKGEIGLPGPPASGVLKGVKGRAGFPGLIGQSGEKGNQGLPGVNGEPGPIGYAG
MKGSDGPRGLIGVPGPVGGLGSKGERGDRGVTGRKGNTGKEGFNGTTGDKGFSGSKGQKG
EPGRVLGLSNLKQPDVKPGVPGDVGDVGPQGDVGDVGFPGETGAKGDKGGSGEQGVPGLP
GPAGLNGIPGEDGLKGQTGVTGPPGVTGLRGDRGPPGINGGAGPQGDAGFLGPKGEIGKP
GPEGQPGKVGKDGLNGRPGRNGWKGFPGMRGMNGLPGRPGLKGENGNDGEAGPPGVPGSV
GSEGQMGSPGLNGRVGRRGPFGLPGKKGSSGEPGLPGVDGLDGRDGVKGDAGFPGSSDVK
GEPGRPGAVGLLGPSGEDGPPGPRGLVGLGGEKGDIGLSGPPGPPGRPGIIGFSGFRPEK
GDTGLSGRLGEKGLPGQPGVPGDNGRQGEDGVKGEQGLIGEPGPNGLDGLHGLQGDRGVP
GLAGRRGNSGQKGEEGLVGPPGVDGAKGDTGPSGFAGKDGQLGPKGDVGLPGPPGRLIDS
DGVIQGRVGNPGMPGFPGRPGERGSQGEQGPRGFKGEPGMPGRNGRNGLSGPRGLPGNSG
PRGLDGPDGYGGVDGGPGAKGATGLPGHVRPPGHLIVRHSQTVDIPDCPHGTNKLWEGYS
LLYLEGSEKAHGQDLGRTGSCVRRFNTMPFVYCNVNNVCRFAARNDKSYWLSTTAPIPMM
PVNVEAAQEHISRCVVCEARAQAISVHSQSTDIPSCPPNWRGVWIGYSFIMHTASGAEGS
GQSLASPGSCLSDFRSTPFIECNGEQGHCFYFNNLFSFWLTSIDENDQFATPEKQTLKAG
NLRTRISRCQVCMRMT
Nucleotide sequence
Length: 6,145
>Moocul.CG.ELv1_2.S103735.g09697.01.t
CGAAGGCAAAGGTTGAGTAGAAATCCAAGTTGTACGTTTTTTGATGTTTCATTCGATGTT
TTACAAGTCCCTTTGTTAGAGCCTCGATTTAGCGTAAGATAGCGAGGCGTTACAGCGACC
AAATCGCCGGGAAACTCGACGACATTCGCCGGAGTTGTTCGGTGAAGTTTTGGTGACTTT
TTGGGCTGAAGAACTTGAAGCACATGACGATTTGAAGAAGAGGAAGATTAAATATTCCAA
GGAAGAAGATTCACGAGGATTCTCATGATGGAAAACTCAAAGTTGATGTTTCTTCTGCTT
GTTTTGGTGTCATTGACACAAGTTATCAATGCGCAATACAAAAAAGAAGAGGGGCCATGT
GGAGGACGCGACTGTACAAATTTAGGACCATGTGCTCAGTGTATTTCTGAAAAAGGAAGA
CGGGGATTGCCAGGCATCCCAGGACAAACTGGACCAATAGGACCTGCAGGCATGGTTGGA
CCACAAGGTTTGATTGGTCCTAAGGGTCAAAAAGGATACGCTGGCCCTCAAGGTCGTATG
GGACCTCGTGGCGATAAGGGTAGCAGAGGTCGCAATGGGTACCCTGGTTCAAATGGTACT
CCTGGTTACCAAGGCGAATCTGGACCAAGGGGTTATCCAGGTATCAATGGCTGCAATGGG
ACAATTGGAGATCATGGCAGAGACGGGGACCAAGGCCCTCCTGGTCTTGTTGGCCAACCA
GGCTTTCAAGGATTCAAAGGTGAGAAAGGTGAACCAGCTGTCATCCGTGACGAGGACATG
ATCAAAGGTCAACCAGGTGACTTTGGACCGAAAGGGCCACGTGGCAGAGCCGGACCGCCA
GGTCCGCAGGGACAAATGGGTCCAATCGGGTTGACTGGGCGACCTGGCCCTCCTGGTCCA
GACGGTAGGAAAGGTGAATCAGGCGATCAGGGCAATCAAGGAATTGGGATTGTTGGACAA
AAAGGACCTCCGGGCGAGCCGGGTCCGGCAGGGAGCCCTGGTACCGGCCCTTCTCCACAA
GTTGGTCCAACACCCGGATATCAAGATGAGCCTGAAGGCGAAATTGGAGAAAAAGGTGAA
CCTGGGCGTCCGGGACAGAAAGGTCCGATTGGACAGGATGGAGATATTGGAATGAGGGGA
CAAAAAGGCATGACGGGAATGAAAGGAGAAAAGGGTGTCCGTGGAACTGCCGGACCACGT
GGCCCACCTGGCGTGACAGGCGCTGATGGATTTGATGGGCGAAAGGGTGAACCTGGTATG
TCAGGGTTTCCAGGGCAAGATGGTGTCGATGGAATGAAAGGAGCAAGAGGAATGTCAGGG
TTCCCAGGACGATCTGGTGCTCCTGGTTTATCGGGTCTCGAAGGCACGGCTGGTCCTCCA
GGATTGCCGGGGCAAGCAGGTTTACGAGGTGAAAGTGGCATGGCAGGACGGGATGGAGTT
AATGGAATACCTGGACAGTTTGGCGATGATGGCTTCCCCGGACAAGATGGCCCACCAGGG
AGACCTGGATTGCCTGGAATTGGAATCAAGGGAGAGAATGGGCTACCAGGGGTTCGTGGT
GCAAATGGCATTGATGGTGCGGCAGGATTGCCGGGTCTGAAAGGAGCTACAGGTCCAAGA
GGAAAGGATGGCATGTCAATCAAGGGCATGGATGGAATGAACGGTCTTGATGGTATTCAC
GGCTTCCAAGGACTCAAAGGAGCTAGAGGGCGTCCAGGTGCCCCTGGAAGACTTGTTGGA
CCTCATAATATCACTGGCGAACGAGGATCACCAGGAAAATCAGGACCAATCGGCCTGCCA
GGACTTCAAGGTCCAAATGGAACTCCAGGTCCTGAAGGTCAAAAAGGTGAGGCAGGTGGT
GAATGTGAATGCGATGATGCTGTCGGACCAAAAGGAAATGCCGGTCCACAAGGATTGCAA
GGACTTCCAGGAAGTAACGGTTTGCCAGGTCTTCCTGGGATTGCCGGAGGAAGAGGAGAT
GCTGGCGAGCCTGGTGCTGATGGCATTCTTGGAAACGATGGTTTAAGAGGAAATACTGGA
CTTCCAGGTCTACCTGGTCAAAAAGGAGACCCAGCATTATTTCCTGATGGTGTCATTGGT
CCAGTCGGTGAACCTGGTTTGCCAGGAGGTCCAGGACGACCTGGTCTTAATGGCCTGGCA
GGAAAGGATGGCTTAGATGGACTGCCTGGCCCACTTGGAGAAAAAGGAGAAATTGGAAGT
CAAGGTCCACGTGGAGCTTCAGGGGATCGAGGTTCTGATGGAGACCGTGGTTTGCCGGGA
CGAAATGGTGGTGATGGTATTGGATTCCCTGGACAACCCGGAGACAAAGGAGAGAAGGGC
CAGAATGGTTATGAAGGTCTCTCAGGGGAGAATGGAGCAAAGGGTGAACCTGGCGAAGTT
ATCCTTCCGAGAAATGTTGTGGGTGAGAAAGGTCAACGAGGACCACCTGGCCATTCCGGG
TTGCCAGGTTTGACAGGAGATGTTGGTCAACCAGGAATACCTGGGGTGCCAGGCTTTCCT
GGCAAGATGGGAGGACGTGGCGATATTGGACCTATTGGACCTCCTGGTCAACCTGGCCCA
AAAGGTTTTACTGGACAACGAGGTTACAAAGGTGTGCCTGGATTTCCGGGAAGTAAAGGA
ACAGCAGGAAGAAAAGGAATTCCAGGAGTGAAAGGACGACAGGGGTTGAAGGGTGAGCCA
GGCATTGATGGACTATTAGGAGAACATGGCCAAGATGGTGAAAAAGGAGATCAAGGCAAT
CCTGGACCTGCTGGTGAAAAGGGAGCAGTCGGACTTGAAGGAACACCAGGTCTTTCAGGC
GTTCGTGGTGTTAAAGGCACTCCTGGTAACGATGGGTTAATTGGATTGCCAGGTCAATTT
GGATTTAAAGGTGAGAAGGGTGAGTCAGCCCTGGAAGGTCATCGTGGTCGTGAAGGAGAA
AGAGGTCCTCCTGGCCCATCTGGGCTACAAGGATTACCTGGAACCAAAGGTGAAATTGGT
TTGCCTGGTCCTCCTGCCTCAGGTGTTCTTAAAGGTGTAAAAGGAAGAGCGGGATTCCCA
GGATTGATAGGCCAATCAGGTGAAAAGGGTAACCAAGGTTTACCAGGAGTCAATGGAGAG
CCTGGACCAATCGGATATGCCGGCATGAAAGGAAGTGATGGCCCAAGAGGTCTTATAGGG
GTGCCAGGGCCAGTTGGTGGATTGGGTTCGAAAGGAGAAAGGGGAGATCGTGGAGTGACA
GGACGGAAAGGAAACACAGGAAAAGAAGGATTCAATGGCACCACTGGTGATAAAGGCTTC
TCTGGCAGCAAAGGGCAGAAAGGAGAGCCAGGACGTGTTCTTGGACTCTCTAATTTGAAA
CAGCCTGATGTAAAACCTGGTGTACCAGGGGATGTTGGTGATGTTGGACCACAGGGAGAT
GTTGGTGATGTTGGCTTTCCTGGTGAAACTGGAGCCAAAGGAGATAAGGGAGGTTCTGGA
GAACAAGGTGTTCCAGGCCTTCCTGGTCCCGCTGGTCTCAATGGTATACCAGGAGAAGAT
GGGTTAAAGGGACAAACTGGTGTGACTGGACCTCCAGGTGTTACTGGACTTAGAGGAGAT
AGGGGACCCCCAGGAATCAATGGAGGGGCTGGGCCACAAGGAGATGCTGGTTTTCTTGGA
CCAAAAGGTGAAATTGGAAAGCCTGGGCCTGAAGGACAACCTGGTAAGGTTGGAAAGGAT
GGTTTAAATGGTCGCCCAGGTCGCAATGGATGGAAGGGTTTCCCTGGAATGAGAGGAATG
AATGGACTTCCAGGTCGACCTGGATTGAAAGGGGAGAATGGAAACGATGGAGAGGCTGGT
CCACCTGGCGTACCCGGTTCTGTTGGATCCGAAGGACAAATGGGTTCACCTGGTTTAAAT
GGAAGAGTTGGAAGAAGAGGACCGTTTGGTCTACCAGGAAAGAAAGGAAGTTCTGGAGAA
CCTGGTCTACCAGGAGTTGATGGATTGGATGGCCGGGATGGTGTAAAAGGTGACGCAGGA
TTTCCTGGTAGCAGTGACGTCAAAGGTGAACCTGGTAGACCTGGTGCAGTAGGATTGCTA
GGGCCAAGTGGGGAAGATGGCCCGCCAGGACCAAGAGGACTTGTTGGCTTGGGTGGTGAA
AAAGGAGATATTGGGCTATCTGGTCCACCGGGTCCCCCAGGACGACCAGGTATTATTGGA
TTTTCTGGCTTTAGACCAGAGAAGGGTGATACTGGCCTAAGTGGACGGCTAGGAGAAAAA
GGTTTACCAGGTCAACCAGGTGTACCTGGAGATAATGGTCGACAAGGTGAAGATGGTGTC
AAGGGTGAACAAGGATTAATTGGTGAACCAGGACCAAATGGACTTGACGGTTTGCATGGA
TTACAAGGGGACAGAGGAGTACCTGGTCTAGCTGGTCGTCGCGGAAACTCAGGACAAAAG
GGTGAAGAAGGTCTTGTTGGCCCTCCAGGAGTTGATGGTGCTAAAGGAGATACAGGCCCA
TCAGGTTTTGCTGGGAAAGATGGACAACTAGGACCAAAAGGAGACGTTGGATTGCCTGGA
CCACCTGGTCGACTAATTGACAGTGATGGTGTGATTCAGGGACGAGTGGGTAATCCTGGT
ATGCCAGGGTTCCCAGGAAGACCGGGTGAGAGAGGTTCACAAGGTGAACAAGGACCAAGA
GGATTCAAGGGAGAACCTGGTATGCCTGGACGAAACGGAAGAAATGGTCTTTCAGGTCCA
CGTGGGTTACCTGGTAATTCGGGACCTCGTGGGTTGGATGGTCCTGATGGTTACGGGGGT
GTGGATGGTGGTCCGGGAGCGAAAGGTGCAACTGGATTGCCAGGACACGTTAGACCACCT
GGCCACTTAATCGTTCGCCATTCCCAAACTGTTGATATACCAGACTGTCCACATGGAACT
AACAAACTGTGGGAAGGCTACAGTCTGTTGTATCTGGAAGGTAGCGAGAAAGCACATGGG
CAGGACCTCGGCCGAACTGGGTCATGTGTACGTCGTTTTAACACAATGCCATTTGTTTAT
TGCAATGTAAATAATGTTTGCCGTTTTGCTGCAAGAAATGACAAGTCTTATTGGCTTTCA
ACGACTGCACCAATTCCTATGATGCCAGTAAATGTTGAAGCTGCGCAAGAACATATCAGT
CGATGTGTGGTTTGTGAAGCAAGAGCGCAAGCAATCTCTGTGCACAGTCAAAGTACCGAC
ATCCCGTCATGTCCGCCAAATTGGCGAGGAGTTTGGATCGGTTACAGCTTTATAATGCAC
ACAGCATCAGGAGCTGAGGGAAGCGGTCAATCACTTGCAAGTCCTGGATCATGTTTGTCC
GATTTCCGATCGACGCCATTCATCGAATGCAACGGAGAACAAGGCCATTGTTTCTACTTC
AATAATTTGTTCAGTTTCTGGTTGACGTCGATAGATGAAAACGATCAATTTGCAACACCC
GAAAAGCAGACACTAAAAGCAGGAAATTTACGCACACGTATTAGTCGTTGCCAAGTGTGC
ATGAGAATGACATAGAAATATTTTTCACCTCTGTGTATAACTGAAGTTTGTGTTGTTCAT
GCGACTGTCAGCATTTTAGTCTCTCCCGAAGAGAAACTTTGTAATTCAGCATAATGTTTG
TAAATATGCGACATTTTTTTGTATTATAAAATTTTTAGCAGACTTTAATATTTAATACAA
AATGCAAGCTTTATTTTTCTTTGCATTTTTCCTGTTTTTTTTTATTATTATTTTATTTTT
TGTCTTTTACATGAAAGCCTACAAACATTAATAAGCCGATATCAAGCGATCAAGTGTTTT
TCAGTAATATTATCTTATTGCATCTTCTTTGCAGCATATTTATATGCAAGCAGACTGCAT
CTTACTTTTTAACAACTTCCTTGCTTGCTAATGAACATCATTAAATATTCCATAAATATA
AAGTTGGCCAGCACCATTGAACATACACACATTTACACTTCAGCATATTCTAATTTTAGT
GTTGTGTGCGTGTTCCAAATGTGTAATTCTGCAACACATACACTACTTATCGCTTTCGGC
ATCAGTATTAAGTCTTGTGCCTTAATTTTCGTTCACTTTATTATTTACGTAAAATAAATC
ATTGAAATAAATTTTTTAAACTTGG
| Pfam |
Collagen (IPR008160) - T[51-109] 2.2E-8 - T[106-163] 3.7E-9 - T[174-226] 4.8E-7 - T[307-361] 6.1E-7 - T[370-418] 5.1E-7 - T[541-599] 1.1E-8 - T[720-774] 1.7E-7 - T[762-820] 7.5E-10 - T[804-862] 6.8E-8 - T[858-916] 1.1E-8 - T[966-1024] 6.3E-8 - T[1039-1097] 3.0E-9 - T[1096-1153] 7.8E-8 - T[1336-1392] 1.1E-7 - T[1381-1435] 5.1E-8 - T[1445-1497] 1.2E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1530-1756] 2.9E-110 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1533-1756] 112.001 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1533-1640] 4.0E-61 - T[1641-1755] 1.6E-64 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1535-1638] 1.5E-36 - T[1643-1753] 3.6E-41 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1535-1640] 5.18E-43 - T[1642-1754] 3.06E-42 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 45.882 % | 591 | 0 |
| CO4A1_HUMAN | 40.079 % | 550 | 2.12E-166 |
| CO4A6_HUMAN | 40.795 % | 714 | 0 |