Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S105940.g10228.01.t

Possible name(s)

AC012314.17; RPS9

Gene model

Moocul.CG.ELv1_2.S105940.g10228

Location

S105940 [10,923 / 11,502]

Sequences

Amino acid sequence

Length: 192

>Moocul.CG.ELv1_2.S105940.g10228.01.p
MPHARSLVRSKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKLVLAKIRKAARDL
LTLDDKDQKRLFEGNALLRRLVRTGVLDEAKMKLDYVLGLKVEDFLERRLQTQVFKLGLA
KSIHHARVLIRQRHIRVRKQVVNIPSFLVRLDSQKHIDFSLRSPYGGGRPGRVKRKNMKK
GTGGDDDEEDED

Nucleotide sequence

Length: 579

>Moocul.CG.ELv1_2.S105940.g10228.01.t
ATGCCGCACGCTAGAAGTTTAGTGCGTAGTAAGACTTACGTTACACCTCGACGTCCGTTC
GAGAAGTCTAGATTAGACCAGGAATTAAAGCTTATTGGAGAATATGGTCTAAGAAACAAG
CGTGAGGTGTGGAGAGTCAAACTGGTGTTGGCTAAGATCCGTAAAGCTGCTCGTGACTTG
CTCACCCTTGATGACAAGGACCAGAAACGTCTTTTCGAAGGTAATGCTTTACTTCGACGT
CTTGTAAGAACTGGAGTTCTTGACGAAGCCAAGATGAAGCTCGATTACGTTTTGGGTTTG
AAAGTTGAAGATTTCTTGGAAAGAAGACTCCAAACTCAAGTTTTCAAGCTTGGACTCGCT
AAATCAATTCATCATGCTCGAGTTTTAATTCGTCAGCGTCATATTCGTGTTCGCAAGCAA
GTTGTGAATATCCCCTCATTTTTGGTGCGTCTGGATTCACAGAAGCACATCGATTTCTCA
TTGCGATCTCCATATGGTGGAGGACGACCAGGACGTGTTAAGAGGAAGAACATGAAGAAG
GGAACCGGCGGTGATGATGATGAGGAGGATGAAGATTAA

InterProScan

TIGRFAM	Ribosomal_S4/S9_euk/arc (IPR005710) - T[1-165] 2.9E-71
SMART	Ribosomal_S4/S9_N (IPR001912) - T[5-107] 1.9E-16
PANTHER	Ribosomal_S4/S9 (IPR022801) - T[8-190] 1.6E-93
Pfam	Ribosomal_S4/S9_N (IPR001912) - T[19-63] 2.0E-5
ProSitePatterns	Ribosomal_S4_CS (IPR018079) - T[106-130] .
SMART	S4_RNA-bd (IPR002942) - T[108-172] 9.7E-4
CDD	S4_RNA-bd (IPR002942) - T[108-150] 6.63166E-7
Pfam	S4_RNA-bd (IPR002942) - T[108-151] 9.0E-11
ProSiteProfiles	S4_RNA-bd (IPR002942) - T[108-179] 9.909
Gene3D	S4_RNA-bd_sf (IPR036986) - T[109-166] 6.6E-12

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RS9_HUMAN	86.598 %	325	2.17E-115