- Transcript 'Moocul.CG.ELv1_2.S11...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S112637.g12495.01.t
Possible name(s)
PCDH18; PCDH19; PCDHGB2
Gene model
Location
S112637 [29,742 / 34,312]
Amino acid sequence
Length: 855
>Moocul.CG.ELv1_2.S112637.g12495.01.p
MHLLVLFTLICSCACQSTKETIYIFEEITEGSTLANIAELFGRSDEDVKYKLVGNEIYTS
EDGEMFQHTSQDGYDWVTIGTTDGEIKILQKLDRDVECKKAKLCSLQVQIIRLPDQHLYE
VNFLIKDLNDNKPIFPQNPIEFSVKENIADTETLNLDAYMAQDYDSSFNGEIEYRLVDNP
FFGLTESTDGGGFVHVQLKVLGSIDFEETQSIELTITASDRGIPPLSSVRIRIEASDSST
TEPKTAQTIVEINIEDVNDNAPVIHVNYVVSSDKNTAYVNENSAIGTFIARVSATDADDG
DNGRVELTISSSKGNTDDWMLYEEKNYFVLSEKGFIETTEELDRESCNKYSVTITACDHG
VASKCSQKDINIVVLDVNEFPPIFQMPSQFVSLYENMNVGREVITVHATDEDSINGPALT
QGKKDKVIPSRNGDITFIISEGGQGIFDINQESGKIFLLRPLDREVKSEWVLTVEAKDGG
FPRTLESYCDIIIKVDDVNDNRPFFVNPAINNSLIYTTPVPNKIITKIRAVDYDVGANAN
LIFSILSIRTSAFTSPGFEVIAGEPSSIRDTAITLNANTGELSIGAVGVEKGMNHIELQV
CDSGIIQLCSKTTLRVMVTNAPLHNSQDANGSDLLILAITLGVVAVLLLVTIPLIIICCR
KNNNELKSYGSADESNRFDFITKEGPHCDDDSSFCADKSQVKYTFEKNNELQHQNSKFGH
AFGSKLSSSQLSTANPTSSYKHKHHSVSDGDSGRGDSEPGSFEAICESHEMNLNQQRLSS
TCSDVCLTHGHSDACWMPATYQTRSISPSSVLSKCSSTTSQLQRNNFYQNIPMNKQFSTN
EQFNKLSPRYVVQNV
Nucleotide sequence
Length: 2,727
>Moocul.CG.ELv1_2.S112637.g12495.01.t
TTGTTTGTATTTTCAGATCTTTCTCGATTATAATTTCCGTAAGTGCTTATTGTACAATAA
AGTCGTTGACAAACGAGAAGGGAATAAATGAAAATATAGCGTGATAAGAAAGCAATACAC
CGACGCTGAGGGCTGGGAAAACCACAACAGGAACAACTCAATATGCATCTTCTAGTGCTA
TTTACGTTGATCTGCTCATGCGCATGTCAAAGCACCAAAGAAACAATTTATATATTTGAG
GAAATTACGGAAGGTTCGACGTTGGCTAACATTGCCGAATTGTTCGGGCGCTCGGACGAA
GATGTTAAGTACAAACTTGTTGGTAACGAAATATATACATCAGAGGACGGAGAGATGTTC
CAACACACATCACAAGATGGATATGATTGGGTGACGATTGGCACCACCGACGGAGAAATT
AAAATTTTGCAAAAACTTGATCGGGATGTCGAATGTAAAAAAGCAAAATTATGTTCACTT
CAAGTGCAGATTATTCGTCTGCCGGACCAACACTTATATGAAGTGAACTTTTTGATAAAA
GATTTGAATGACAACAAGCCGATATTTCCACAAAATCCTATTGAATTTTCTGTGAAAGAG
AACATAGCTGATACCGAGACGTTAAACCTTGACGCCTACATGGCCCAAGACTATGACAGC
AGCTTCAATGGAGAGATAGAATACAGATTAGTGGATAATCCATTCTTCGGTTTGACAGAA
AGTACTGATGGAGGAGGATTTGTTCATGTTCAGTTGAAAGTACTTGGTTCTATCGACTTT
GAAGAAACTCAATCTATTGAATTGACTATCACTGCGTCAGACAGGGGAATCCCTCCATTG
AGCTCTGTTCGTATTCGAATTGAAGCAAGTGACTCGAGCACCACGGAACCGAAAACCGCT
CAAACAATAGTTGAAATAAACATTGAAGATGTGAATGATAATGCGCCTGTCATACACGTT
AATTACGTTGTTTCATCCGACAAAAACACAGCATACGTCAACGAAAACTCCGCTATTGGA
ACATTTATTGCTCGGGTATCGGCTACGGATGCTGACGATGGAGATAACGGGAGAGTCGAA
CTGACCATTTCATCATCTAAAGGAAACACTGACGACTGGATGTTGTATGAAGAGAAGAAT
TATTTCGTTTTGAGTGAGAAAGGATTCATTGAAACAACTGAAGAACTCGATCGTGAATCG
TGCAATAAATATTCCGTAACGATTACCGCATGCGATCATGGTGTTGCATCAAAATGCTCG
CAAAAAGACATTAATATCGTTGTTTTGGACGTGAATGAATTTCCGCCAATTTTCCAAATG
CCATCGCAATTTGTGTCACTCTACGAAAATATGAATGTTGGACGAGAAGTCATCACAGTC
CATGCAACTGACGAAGATTCCATCAACGGACCAGCACTGACACAGGGAAAGAAAGATAAA
GTGATTCCCTCTCGGAATGGCGACATCACTTTCATCATCAGTGAAGGTGGTCAAGGTATA
TTTGATATCAACCAAGAATCTGGAAAGATATTTTTGCTTCGACCGTTGGACAGAGAAGTA
AAGAGCGAATGGGTGCTAACCGTTGAAGCAAAAGATGGTGGATTTCCCCGAACTTTGGAA
AGTTACTGTGACATAATTATAAAAGTTGATGACGTCAACGATAATCGACCATTTTTTGTT
AATCCCGCCATCAACAATTCCCTCATTTATACCACACCTGTCCCAAACAAAATCATCACT
AAAATAAGGGCTGTTGATTATGATGTCGGAGCAAATGCTAATCTCATCTTCTCAATTCTA
TCAATCCGGACATCTGCTTTCACATCACCTGGTTTCGAAGTCATTGCGGGTGAACCCTCC
AGCATTCGAGACACCGCCATCACCCTGAACGCCAATACTGGTGAACTGTCCATTGGTGCA
GTTGGTGTGGAAAAGGGAATGAACCATATCGAACTCCAGGTGTGCGATTCGGGTATTATT
CAACTTTGCTCGAAAACAACACTCCGAGTGATGGTGACGAATGCGCCACTGCACAACTCA
CAGGATGCCAACGGAAGCGATTTGTTGATTCTTGCAATTACATTAGGAGTTGTTGCTGTG
TTGCTGCTCGTCACAATTCCACTGATAATCATCTGCTGTCGGAAGAACAACAATGAATTG
AAATCTTACGGATCTGCTGACGAAAGTAACCGGTTCGATTTCATCACTAAGGAAGGTCCT
CATTGTGACGACGACAGCTCGTTCTGTGCTGATAAATCTCAAGTAAAATACACATTTGAG
AAGAACAACGAATTACAACATCAAAATTCCAAGTTTGGACACGCCTTTGGCAGCAAGCTT
TCATCGAGTCAACTTTCAACTGCAAACCCGACATCAAGTTACAAACATAAACATCATTCG
GTTTCTGATGGTGACAGCGGCAGAGGCGACAGTGAGCCTGGAAGCTTTGAAGCTATTTGT
GAATCTCATGAAATGAACTTAAACCAACAGCGTTTATCATCAACATGTTCTGATGTTTGT
TTAACTCATGGTCACTCAGATGCATGTTGGATGCCAGCTACATATCAAACTCGCTCTATA
TCGCCATCTTCCGTGTTGTCGAAGTGTTCATCAACTACCTCACAACTGCAAAGGAACAAT
TTTTATCAAAATATTCCAATGAACAAACAATTTTCAACAAATGAACAATTTAACAAACTT
TCACCTCGCTATGTTGTTCAAAACGTT
| SMART |
Cadherin (IPR002126) - T[41-133] 0.29 - T[159-262] 8.0E-17 - T[292-382] 6.5E-18 - T[421-503] 1.2E-21 - T[528-622] 0.18 |
| PRINTS |
Cadherin (IPR002126) - T[75-94] 5.1E-26 - T[270-299] 5.1E-26 - T[349-361] 5.1E-26 - T[363-382] 5.1E-26 - T[382-395] 5.1E-26 - T[452-478] 5.1E-26 - T[487-504] 5.1E-26 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[125-269] 1.99E-18 - T[257-376] 4.71E-19 - T[372-506] 2.14E-22 - T[498-620] 5.85E-8 |
| Pfam |
Cadherin (IPR002126) - T[141-229] 6.2E-7 - T[276-374] 1.5E-14 - T[391-495] 3.7E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[252-262] . - T[493-503] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDGH_HUMAN | 26.521 % | 161 | 1.16E-40 |
| PCD18_HUMAN | 27.179 % | 166 | 4.89E-42 |
| PCDGE_HUMAN | 27.273 % | 166 | 2.69E-42 |