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- Transcript 'Moocul.CG.ELv1_2.S11...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S112637.g12496.01.t
Possible name(s)
PCDH18; PCDH19; PCDHB11
Gene model
Location
S112637 [45,797 / 50,653]
Amino acid sequence
Length: 1,076
>Moocul.CG.ELv1_2.S112637.g12496.01.p
MLLFMLATVSCLLMRVSCATLSASSHVEEEQSKGFEVASIPVLFNITTAPNKRFKILSQK
LAISNNGIVFNKRMKSEQDFVRLNARNGKLTLVKKIDRDEVCGKAKLCAVKLQIIELPDQ
QLLEMNLVIDDINDNYPIFPQKIIDISLHENFPIGETYNLDAYLANDKDSDMNGEIEYTL
TENPNFVLKEYSGSGMENSKHVEIKLLGSIDFENKQELELTLGASDRGTVSKSSSTTLRI
RILDVNDNRPIFQQEKYTVTLKENQLPGHEVVTVQADDADSGDLGQVQYYLSHRNNRHVM
QLVSVHAQTGVVSLNEKLDRERDDGVKILVEAKDTGIMSQKFGETMVEINIEDVNDNAPV
IHVNYVVSSDKNTAYVNENSAIGTFISRVSVTDADDGNNGNVDVTMESSPAMKPNVRKYN
RHRALKLNADGFIETTTQLNREECNKYVVVITACDQGFDQRCSSLTLDVVVLDVNEYAPK
FNVPTQRVVLREDVNVGITVASVYAEDKDAINAPAFTLNLNEEVVPSKNGKVRYSITSGA
RGLFAIDANSGKISLIRRLDREAKSEWKLKVVARDGGEPIALESSCDVIVKVDDVNDNSP
FFVNPAVNNSLVYASIYRQELITNIRAMDYDLNKNSKLTYKLVSSQNIVENQKTNPENSA
ENQSFAHGIMAEFRKGHFILNPTTGELRLNFSRANLSLFLGLKKVVIQACDSGFPKLCSY
TGIRIMISKSLVPIRDVTLEQKQSPDTLILAISLGAFAVVLAVLITVVAIKCRRQNKEIR
SYSIPQNTNRSEYSLGKESDVGEIESLHEDQIHNQSSAEEINQMVKQNEKHDKVSSHSDG
DSGRGDSEPDNGGPHRNERSSLAEITKKKMMGSMCSVQCIRFGHSDKCWMPSSEVSIHGS
SRSVNVMRNEKVYDWHKMKPKLYNSPLKSEHLARYGRSDSDLLGKNIPRTTSIIQPPSHS
SGNFESQLEYSRPSSLALMNRRYSASAVARSNNLPLVSNSYRQSPVPRSCQSTPSDFINR
ITPANPQLNTVYEDNALTSPHKESRQLKYLNDQYRVSRSRVPYTQTPLSYPYRSAC
Nucleotide sequence
Length: 3,614
>Moocul.CG.ELv1_2.S112637.g12496.01.t
TGTTTTAGAATTTTCTAGTTATCATTTTATATTATCAAATTCACTGAACTGTTGGAATGA
ATTTTTAATCGTGAAAATCATTCGAGAATATATATCGAAGTTAACGAAGAAATAAAAGAT
TTCCACCTGCATCATCATGCTGTTGTTCATGCTGGCTACTGTCAGTTGTTTGTTGATGAG
GGTTTCCTGTGCCACACTCTCAGCAAGTTCTCATGTCGAAGAGGAGCAAAGTAAAGGTTT
CGAAGTTGCCAGCATTCCAGTGCTGTTCAACATCACCACGGCACCAAATAAACGATTCAA
GATTCTCAGTCAGAAATTAGCAATTTCAAATAACGGAATCGTCTTCAACAAACGAATGAA
AAGTGAACAAGACTTCGTTCGATTGAATGCAAGAAACGGAAAGTTGACGTTGGTGAAGAA
GATCGATAGAGATGAAGTTTGCGGGAAAGCAAAATTATGTGCTGTGAAGTTGCAAATCAT
CGAACTTCCTGATCAGCAACTTCTTGAGATGAATTTGGTGATTGACGACATCAACGATAA
TTATCCGATATTTCCCCAGAAAATCATCGACATTTCGTTGCACGAAAACTTTCCCATCGG
AGAAACTTACAATCTTGACGCTTATTTGGCAAACGATAAAGATTCAGACATGAATGGTGA
AATCGAATACACATTAACGGAAAACCCCAATTTCGTTTTGAAAGAATATTCGGGGTCGGG
GATGGAAAATTCCAAACATGTTGAAATAAAACTGCTTGGAAGTATTGATTTTGAAAATAA
GCAGGAACTGGAGTTGACACTTGGTGCTTCTGATCGTGGAACCGTTTCCAAAAGTTCCAG
CACCACTTTGAGAATAAGAATACTGGACGTTAATGACAACCGGCCAATTTTTCAACAAGA
GAAGTATACAGTGACCCTGAAAGAGAACCAATTACCAGGACACGAGGTCGTGACTGTTCA
AGCAGACGACGCAGATTCTGGAGATTTGGGACAAGTCCAATATTACTTGTCACACAGAAA
CAATCGTCACGTGATGCAACTTGTGTCTGTCCATGCACAGACTGGAGTGGTCTCATTGAA
TGAAAAACTTGACCGGGAGAGAGATGACGGTGTGAAGATTCTGGTAGAAGCAAAGGACAC
TGGAATAATGTCTCAAAAGTTCGGTGAAACAATGGTTGAAATAAACATTGAAGATGTGAA
TGATAATGCGCCTGTCATACACGTTAATTACGTTGTTTCATCCGACAAAAACACAGCATA
CGTCAACGAAAACTCCGCCATTGGAACATTTATTTCTCGGGTATCTGTCACCGATGCTGA
TGATGGAAATAATGGAAATGTTGATGTGACGATGGAATCGTCACCTGCCATGAAACCGAA
TGTTAGGAAGTACAATCGACATCGGGCGTTGAAGCTAAACGCGGATGGTTTCATCGAAAC
AACCACGCAACTCAATCGAGAAGAATGCAATAAATATGTTGTTGTAATCACTGCATGTGA
TCAGGGGTTTGATCAAAGATGTTCAAGTTTGACGTTGGATGTTGTCGTGTTGGACGTTAA
TGAATATGCACCCAAATTTAACGTTCCTACGCAAAGAGTCGTTTTACGTGAAGACGTCAA
CGTGGGAATAACCGTCGCAAGCGTTTATGCAGAAGACAAGGATGCAATTAATGCACCGGC
ATTTACCCTCAACCTCAACGAAGAAGTTGTTCCATCTAAAAATGGCAAGGTTCGGTACAG
CATAACAAGTGGCGCTAGAGGACTTTTTGCGATTGATGCAAACTCAGGCAAGATTTCCCT
GATTCGTCGTCTCGATAGAGAAGCGAAGAGTGAATGGAAGTTAAAGGTTGTGGCACGTGA
TGGTGGAGAACCTATTGCTCTTGAAAGTTCATGTGATGTCATAGTAAAAGTAGATGACGT
AAATGATAACAGTCCATTCTTTGTGAATCCCGCAGTCAATAATTCTCTCGTGTATGCATC
GATATATCGTCAGGAGCTCATAACAAACATTCGGGCAATGGATTACGATCTGAACAAGAA
TTCGAAGTTAACTTACAAACTTGTAAGCTCGCAAAACATTGTCGAAAACCAGAAAACGAA
TCCAGAAAATTCTGCTGAAAATCAATCCTTTGCTCATGGAATAATGGCTGAGTTTCGAAA
AGGACATTTCATTCTCAATCCAACCACAGGAGAACTCAGATTGAACTTCTCTCGTGCAAA
TTTGTCGTTATTCCTCGGTTTGAAGAAAGTTGTAATACAAGCATGTGATTCCGGCTTTCC
GAAACTTTGTTCTTATACCGGAATACGAATTATGATATCCAAATCACTCGTACCTATAAG
AGATGTAACTCTTGAACAGAAACAGTCACCGGATACTTTGATACTGGCCATCTCACTTGG
TGCATTTGCGGTCGTACTTGCAGTATTGATAACAGTAGTAGCCATCAAATGCAGGCGTCA
AAATAAGGAAATTCGATCGTACAGTATCCCGCAGAACACAAACCGGTCGGAATATTCCCT
TGGAAAAGAATCTGACGTCGGAGAAATTGAATCTTTGCACGAAGATCAAATTCATAATCA
AAGTTCCGCGGAAGAAATCAACCAAATGGTCAAACAAAATGAAAAACATGACAAGGTTTC
ATCTCATTCTGATGGCGACAGTGGACGTGGAGACAGCGAACCAGATAATGGTGGACCACA
CCGAAACGAACGAAGTTCTTTGGCTGAAATTACCAAGAAGAAGATGATGGGTTCCATGTG
CTCAGTGCAATGCATTCGTTTCGGCCACTCCGACAAATGCTGGATGCCATCATCAGAAGT
AAGCATCCATGGATCATCAAGAAGCGTCAACGTAATGAGAAATGAAAAAGTTTACGACTG
GCACAAAATGAAACCCAAACTTTACAATTCCCCGCTGAAAAGTGAACATTTGGCACGTTA
TGGTCGAAGCGACTCGGACTTACTTGGTAAAAACATACCACGGACAACTTCAATCATTCA
ACCTCCGTCACATTCCTCTGGTAACTTCGAAAGTCAACTGGAATACTCACGACCGTCATC
TTTAGCGTTAATGAACAGAAGATATTCTGCATCGGCTGTTGCAAGGAGCAATAATTTACC
TTTGGTGAGCAACAGCTACAGACAATCACCTGTTCCACGTTCATGTCAAAGCACGCCATC
AGATTTCATCAACCGAATCACGCCTGCCAATCCGCAATTAAACACAGTATATGAAGACAA
TGCCCTAACTTCTCCACATAAGGAGTCGAGACAACTAAAATATTTAAACGACCAATACCG
TGTAAGCAGATCACGTGTACCGTACACTCAAACTCCACTTTCCTATCCATATCGCAGTGC
TTGTTAAGTGCAATCTGCATCATACATACAAAAGTTCCAACACTACTTTGGTATCGAAGA
CAACCCCCAAAGAACTTTCATCTCCACCGTAATATTTTACTGATATTTCGTCCTTTGTTT
TAAATTATTATTTATATCTTTCTATTATATTTTTTATTTTTGTGCAATGAATTTTATACT
TTTAAACACGTTTGTTTGGTCCATTTTACACTTGTGGAGCAGTTTTTAATGAGTTAAAGA
TAAAACTGAAAAAA
| Pfam |
Cadherin_N (IPR013164) - T[74-115] 2.2E-7 |
| PRINTS |
Cadherin (IPR002126) - T[79-98] 2.0E-30 - T[252-281] 2.0E-30 - T[325-337] 2.0E-30 - T[340-359] 2.0E-30 - T[479-492] 2.0E-30 - T[549-575] 2.0E-30 - T[584-601] 2.0E-30 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[133-252] 4.71E-17 - T[240-367] 2.71E-24 - T[349-468] 1.71E-15 - T[469-605] 1.86E-20 - T[595-727] 1.86E-10 |
| Pfam |
Cadherin (IPR002126) - T[147-243] 4.7E-8 - T[257-352] 2.0E-15 - T[373-471] 3.6E-10 - T[527-592] 8.0E-12 |
| SMART |
Cadherin (IPR002126) - T[163-250] 2.1E-17 - T[274-359] 3.0E-16 - T[389-479] 1.2E-13 - T[518-600] 4.2E-23 - T[625-735] 2.2 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[240-250] . - T[349-359] . - T[590-600] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDBB_HUMAN | 31.239 % | 248 | 2.09E-69 |
| PCD18_HUMAN | 28.279 % | 264 | 3.4E-73 |
| PCD19_HUMAN | 28.37 % | 253 | 1.22E-69 |