Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S112858.g12615.01.t

Possible name(s)

CIRBP; TRA2A; TRA2B

Gene model

Moocul.CG.ELv1_2.S112858.g12615

Location

S112858 [21,132 / 26,299]

Sequences

Amino acid sequence

Length: 242

>Moocul.CG.ELv1_2.S112858.g12615.01.p
MSDSELEPGEYQHANSGTKERSARSVSPAGSRGSKRSPSPRRRSYSRSRSRAGFGSYIFK
IEKGSRSRSRSREYHRRRSPKRNSHGRRSPSYERRYSRKRSYSRSRSRSRSYGSSSPLSG
RKRHIGDRMNPPSGKCLGVFGLSLYTTENDLQDVFSRYGYIDKCNIVMDQKTGRSRGFGF
VYYENVDDAVEAKDRANGMDLDGRKIRVDFSITKRAHTPTPGMYVGRPAPKSVLKDGMRG
EM

Nucleotide sequence

Length: 729

>Moocul.CG.ELv1_2.S112858.g12615.01.t
ATGAGCGACTCTGAGTTGGAACCTGGTGAATATCAACATGCAAATTCTGGTACAAAAGAA
AGATCTGCAAGGTCTGTCAGTCCAGCTGGATCGCGAGGTTCCAAACGATCTCCATCTCCT
CGTAGAAGATCATACAGCCGTTCAAGATCAAGAGCAGGATTCGGATCGTACATATTCAAA
ATTGAAAAGGGTTCTCGATCTCGTTCACGAAGTAGAGAATATCATAGACGTCGAAGTCCA
AAAAGAAACAGTCATGGACGGCGATCTCCAAGTTACGAACGCAGATATTCACGAAAACGA
TCGTATTCTCGTAGCAGGTCAAGGTCACGATCATATGGTTCAAGTTCACCACTTTCTGGT
CGTAAGCGTCATATTGGTGACCGGATGAACCCACCATCAGGCAAGTGCCTTGGAGTATTT
GGTTTGAGCTTATATACAACTGAGAACGATTTGCAAGATGTCTTTTCAAGATATGGTTAC
ATAGACAAATGCAATATTGTGATGGATCAAAAGACTGGCCGATCTCGTGGCTTTGGTTTT
GTTTACTATGAGAATGTCGATGATGCAGTTGAAGCTAAAGATCGAGCAAATGGTATGGAT
CTAGATGGGCGAAAAATTAGAGTTGATTTCTCAATAACCAAACGAGCTCATACTCCAACA
CCGGGAATGTACGTTGGTAGACCTGCCCCGAAGTCGGTACTAAAGGATGGGATGAGAGGA
GAAATGTGA

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-220] 5.8E-29
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[129-228] 4.97E-30
ProSiteProfiles	RRM_dom (IPR000504) - T[135-213] 17.609
SMART	RRM_dom (IPR000504) - T[136-209] 7.3E-23
Pfam	RRM_dom (IPR000504) - T[139-207] 1.1E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRA2B_HUMAN	70.69 %	177	9.76E-55
TRA2A_HUMAN	69.298 %	174	9.57E-54
CIRBP_HUMAN	51.852 %	82	2.03E-19