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  1. Transcript 'Moocul.CG.ELv1_2.S11...'

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S113418.g12877.01.t

Possible name(s)

DST; SYNE1; SYNE3

Gene model

Moocul.CG.ELv1_2.S113418.g12877

Location

S113418 [99,086 / 102,377]

Sequences

Amino acid sequence

Length: 575

>Moocul.CG.ELv1_2.S113418.g12877.01.p
MATKNELVQKLAEWQQFESAKEELLSWMAENKAVLSGSLASAVDLKDKESHLDKYRLILE
DIVTHKDMVDICHEKAQDLNQEFNMQLYQEIVAMAKERVDFLESSVQLHEKYYDSVQDFS
SWINSAKEELHRWFDMEGSKEAVKKKLGKIQTLKTTRAHGRFKLDTLLEIGEQVLINTAE
EGRGVLKAEIESLKDEWKSWDRNLIEAEISLESRLSQLSQYEESFEVEKNNLKDTLMSFI
QQLDELQEQITSETDVDISKPVKAAAVLKACKNLRNSFDGMQESENTLKARLNSLCRSYH
GSEINEISTEVTDALKRSDSMKLHLDKLSSDAEKSLMESFHVLLKDFDGWLRSKKELVQG
LGEISGNKTAVKNKLHHLQAFLSNMEEGQVKLSSLTTSGETLITVLTPEVGDEIKQQMKK
HKDAWKHFLILVQEREQALSSFLEQLTDFENSIEELSRWQKETNEKYEAEAGLKSTLGLK
KSQYNSLQSMAESISDNVYKFERLKRKAHKLGSSNELTKLNQLTTSHEALSKKIMEALKQ
SEQHHRHHQEYQNMLTESQEWLRDFKHRLDTYSNI

Nucleotide sequence

Length: 1,765

>Moocul.CG.ELv1_2.S113418.g12877.01.t
CGAATTAAAAGAACTACACGACCAGCTGCTGTCGAAGTTGATGGCAACAAAGAATGAGTT
GGTGCAGAAGTTAGCAGAGTGGCAACAGTTTGAATCTGCAAAAGAAGAATTGCTGTCGTG
GATGGCAGAGAACAAAGCTGTTCTTTCCGGTTCATTGGCATCAGCTGTTGATTTGAAAGA
CAAAGAATCACATTTGGATAAATACAGGTTAATCCTTGAAGATATCGTAACTCATAAAGA
TATGGTTGATATCTGTCACGAGAAGGCACAGGACCTGAATCAGGAATTCAACATGCAGCT
CTACCAAGAGATTGTTGCCATGGCAAAGGAGCGTGTTGATTTTCTTGAATCTTCGGTTCA
ACTTCACGAGAAGTATTACGACTCCGTGCAAGACTTCAGTAGTTGGATAAACTCGGCGAA
GGAAGAGTTGCATCGATGGTTTGATATGGAAGGAAGCAAAGAAGCTGTAAAGAAGAAACT
TGGAAAGATTCAGACTCTGAAAACTACTCGAGCTCATGGTCGTTTCAAACTGGACACTTT
ATTGGAAATTGGAGAACAAGTCCTCATCAACACCGCCGAAGAAGGAAGGGGCGTGTTGAA
GGCGGAGATTGAAAGTTTGAAAGATGAGTGGAAATCGTGGGATCGAAATCTGATTGAAGC
AGAGATTTCCCTCGAATCTCGTTTGTCGCAATTATCGCAGTACGAGGAAAGTTTTGAAGT
GGAAAAGAATAATTTGAAAGATACTTTGATGAGTTTCATCCAACAACTTGATGAATTGCA
AGAACAAATAACATCGGAAACGGACGTGGACATTTCAAAACCTGTCAAAGCTGCTGCGGT
GTTGAAAGCGTGCAAGAACTTGAGAAATTCATTTGATGGAATGCAGGAGAGCGAAAACAC
ACTGAAAGCTCGTTTAAATTCCCTCTGTCGAAGTTATCACGGTTCAGAAATCAATGAAAT
ATCAACGGAAGTAACTGATGCTCTCAAACGGTCCGACAGCATGAAACTTCACTTGGACAA
ACTTTCAAGCGACGCTGAGAAAAGTTTGATGGAATCGTTTCATGTTTTGTTGAAAGATTT
TGATGGATGGCTTCGTTCAAAGAAAGAACTTGTGCAAGGTCTTGGAGAGATATCTGGCAA
TAAAACAGCAGTCAAAAACAAACTACACCATTTGCAGGCTTTTCTGTCTAACATGGAAGA
AGGTCAGGTTAAACTGAGTAGTTTGACGACAAGCGGGGAGACACTAATAACCGTACTTAC
TCCTGAAGTCGGAGATGAAATCAAACAACAAATGAAAAAGCATAAAGATGCCTGGAAACA
TTTTCTTATTCTTGTCCAAGAACGTGAGCAGGCATTAAGCAGTTTCTTGGAACAATTAAC
GGACTTTGAAAACAGCATCGAAGAACTTTCACGCTGGCAAAAAGAAACAAATGAAAAGTA
TGAAGCTGAAGCGGGCCTCAAATCAACTCTTGGATTGAAAAAGTCGCAATATAATTCACT
GCAGTCAATGGCGGAGTCGATATCTGACAACGTTTACAAGTTTGAAAGATTGAAACGAAA
AGCACACAAACTCGGAAGCTCAAATGAACTCACAAAATTAAATCAACTTACAACAAGTCA
TGAAGCGTTGTCTAAGAAAATTATGGAAGCACTGAAGCAGAGTGAACAACATCATCGTCA
TCATCAAGAGTATCAAAACATGCTCACGGAATCACAGGAGTGGCTGCGAGATTTCAAACA
TCGACTCGACACTTACTCTAATATT

InterProScan

PANTHER
SYNE1 (IPR030265) - T[3-253] 5.6E-83 - T[265-572] 5.6E-83
Pfam
Spectrin_repeat (IPR002017) - T[13-82] 3.7E-6 - T[108-200] 4.7E-6 - T[336-439] 9.0E-9
SMART
Spectrin/alpha-actinin (IPR018159) - T[15-103] 0.55 - T[110-216] 1.9 - T[338-440] 3.3E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SYNE1_HUMAN 27.844 % 201 5.48E-55
SYNE3_HUMAN 22.474 % 82.4 2.53E-16