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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.L123.1.v1....' > 
  2. Transcript 'Phmamm.CG.MTP2014.S4...' > 
  3. Transcript 'KH2012:KH.L123.1.v1....' > 
  4. Transcript 'Haaura.CG.MTP2014.S5...' > 
  5. Transcript 'Moocul.CG.ELv1_2.S11...'

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S113418.g12878.01.t

Possible name(s)

MACF1; SYNE1; SYNE2

Gene model

Moocul.CG.ELv1_2.S113418.g12878

Location

S113418 [103,369 / 107,289]

Sequences

Amino acid sequence

Length: 663

>Moocul.CG.ELv1_2.S113418.g12878.01.p
YTDCTKFLGRVCEVVTGREDSLDKLDSFCKSVDDLLDIFEHLEKDLHNAVITPEILNKWN
NEASVLSDKLRHCKGKCPNLDNILQQSQLTVFNSTNEKQRTTVKGFLNRIEVKCDQLLTQ
IGIKQEHFEEVDGFWKNFLDRKERLLKAVDEIEEKADVEISMDVVTQDELQELLKGLNKL
QDDLESKRYDLEGLQAKAERLIKSDPSQTASVNEHLRLVNMSWEDAETAISENKEEFSNL
FTQLRDYEYIRENVTKLVKGAEDITANLEAPRHFSMEEVEWNLSKLETLKEDLDKKQSNV
DEMTRKGKILAGEIKKQMLNDGAYVYNELEVIVDRYLDVQDKVEETMENLKEQLVLWKEL
SGVDSEIEEFLNTSINELNITRSTLDNSQDLQEKLRGIHSDIERHKENYESLQRKVHEIT
SRRRRASVGELDELAQVNENMKLKLDKATAIFKQMQGKLSDFTAQKSGLSKYVDELLDWL
NHKKQSLNNIMKNMRPENIKKCREIHAELLKQHDNVKQTEEHLNALCRKYQTSELDEEKE
KVQHLSNTFQEVSKLSVKALDSMEKNLDDAFNKSVKDFYSWCRAGKEILALCVDSSGDLP
ALVERLEKLQNFVSKANEGLDKVNAVKEAGALCCEHLPSSTVETINQQVENIEEDWQKIS
HDL

Nucleotide sequence

Length: 1,989

>Moocul.CG.ELv1_2.S113418.g12878.01.t
TATACGGATTGTACAAAGTTTCTTGGTCGTGTTTGTGAAGTGGTGACCGGTCGCGAAGAT
TCACTGGACAAACTCGATTCGTTCTGCAAATCCGTTGATGACCTGCTGGACATCTTTGAG
CATTTGGAGAAGGATTTGCACAACGCGGTCATCACACCGGAGATTCTCAACAAATGGAAC
AACGAAGCTTCCGTGTTGTCAGACAAACTCCGACACTGCAAAGGAAAATGTCCAAACCTG
GACAACATCTTGCAACAATCACAACTGACCGTTTTTAATTCAACCAATGAGAAACAACGG
ACGACCGTGAAAGGTTTCTTGAACCGAATCGAGGTTAAGTGCGATCAACTTTTAACACAA
ATCGGAATCAAGCAAGAACATTTCGAGGAAGTGGATGGCTTCTGGAAAAACTTTCTTGAT
CGGAAAGAACGTCTGTTGAAAGCCGTTGATGAAATCGAAGAAAAAGCTGATGTTGAAATA
TCAATGGATGTTGTCACTCAGGATGAATTGCAGGAACTTCTCAAAGGCCTTAATAAACTT
CAGGATGATCTTGAGTCGAAACGCTATGATCTGGAAGGTCTTCAAGCAAAAGCTGAACGA
CTTATTAAATCCGATCCATCGCAAACAGCTTCTGTTAACGAGCATCTTCGTCTTGTGAAT
ATGAGCTGGGAAGATGCAGAGACTGCAATTAGTGAAAACAAAGAAGAATTTTCAAATCTT
TTTACACAACTTCGTGATTATGAGTACATTCGAGAAAACGTGACAAAGTTGGTGAAGGGT
GCAGAGGACATTACGGCCAATTTAGAAGCACCCCGACACTTCTCAATGGAAGAAGTTGAA
TGGAATCTCTCAAAACTTGAGACACTCAAAGAAGATTTGGATAAAAAGCAGTCAAACGTG
GACGAAATGACCCGGAAAGGGAAGATATTGGCTGGTGAAATTAAGAAGCAGATGTTGAAT
GATGGAGCGTATGTTTACAATGAACTTGAAGTCATCGTGGACAGATATCTTGACGTACAG
GACAAGGTTGAAGAGACGATGGAAAATCTCAAAGAACAACTCGTGCTGTGGAAGGAATTG
TCCGGTGTGGACAGTGAAATTGAAGAGTTTTTAAACACTTCCATAAACGAGTTGAACATC
ACGAGATCAACTCTCGATAACAGTCAAGATTTGCAAGAGAAACTACGCGGGATACACAGC
GATATCGAACGACATAAAGAGAACTACGAATCGCTGCAGCGTAAAGTCCATGAAATAACG
TCACGACGTCGAAGAGCATCCGTTGGTGAGTTGGATGAACTCGCGCAGGTCAACGAAAAC
ATGAAATTAAAACTGGACAAAGCTACTGCCATATTTAAGCAGATGCAAGGAAAATTATCG
GATTTTACTGCTCAAAAATCTGGTCTTTCAAAATATGTTGATGAGCTTCTTGATTGGTTG
AATCATAAGAAGCAAAGTTTAAACAACATTATGAAAAACATGCGGCCAGAAAACATTAAG
AAATGCAGGGAAATTCATGCCGAGTTGCTGAAGCAACACGACAACGTGAAACAAACAGAA
GAACATTTGAATGCTTTATGCAGGAAATATCAAACTTCTGAACTGGATGAGGAAAAAGAA
AAAGTACAACATCTCTCAAACACATTTCAAGAAGTATCCAAACTGTCTGTCAAAGCTTTG
GATTCTATGGAAAAGAATTTGGACGATGCTTTCAACAAATCCGTCAAAGATTTCTACTCA
TGGTGCCGTGCTGGAAAAGAGATTCTTGCACTGTGTGTAGATTCCTCTGGTGATCTTCCA
GCTTTGGTAGAAAGGCTTGAAAAATTGCAAAACTTTGTTTCAAAAGCCAATGAAGGTTTG
GATAAAGTAAATGCAGTGAAGGAGGCCGGTGCACTTTGCTGCGAGCATTTACCGTCTTCC
ACCGTTGAAACAATCAACCAACAAGTTGAAAATATTGAAGAAGACTGGCAAAAAATATCA
CATGATCTC

InterProScan

PANTHER
SYNE1 (IPR030265) - T[3-659] 1.1E-115
SMART
Spectrin/alpha-actinin (IPR018159) - T[136-238] 0.56 - T[245-351] 1.2 - T[467-564] 0.78

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SYNE1_HUMAN 28.658 % 263 4.78E-75