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  1. Transcript 'KH2012:KH.L18.125.v4...' > 
  2. Transcript 'KH2012:KH.S910.2.v4....' > 
  3. Transcript 'Haaura.CG.MTP2014.S3...' > 
  4. EST 'FF905303.1' > 
  5. Transcript 'Moocul.CG.ELv1_2.S12...'

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S120678.g14167.01.t

Possible name(s)

SCN1A; SCN2A; SCN3A

Gene model

Moocul.CG.ELv1_2.S120678.g14167

Location

S120678 [6,507 / 20,823]

Sequences

Amino acid sequence

Length: 2,178

>Moocul.CG.ELv1_2.S120678.g14167.01.p
MSAVAGNELIDIKVVPLTQKYINSKPKKEKPKASLRSKDGGRSSRMSNDNELGKPNIDLE
QGKTLPEYLQGDLDDSFLQKPIVDPDPYYEASRGTYVIFDKNKSIYRFNTQRGFYIFGPL
NPIRRVANRILIDPIFNFLIMATILINCGFMTMSSDIWWVNNYVERIFLGIYTFEAIVKL
LSRGFVIGNFTYLRDPWNLLDISVIATAYLDIVMAIMASNSGEEAQKIPGMAALRAFRVL
RALKAISVIPGLKAIVSALIESVKALKDVMILTFFALSVFALIGLQLFMGSLRNKCVRQW
PPNHNPFVEAMWLEQNYTNYDSVYDQLVFNSTYTPSGDIKLNYTVSPPMNCDPNPSPNCT
DESKVWFNQSYSEWINNDCNYCFVNEAAWLCGNSSSAGKCQDGFVCMEIGENPNFGYTSF
DHFGWAFLSLFRLMAQDYWENLYQMSDSIPSSIFTFPLKLVISRAIDGTLRRNYNPDHPL
TTIDKCSCLTDILDEGTLRSNGKGVIWFFFMGIFLGSFYLINLILAVVAMAYEEQHELVE
EEEERKRELLMRKKNEIEQLLMEVHAAEEKLESRRASRACTLESRSSSNASLHSGVTHFG
NTSLYRTESIRSNRSARRRGSVFSAFRSIAGYNKHGDLEDNVSRGSRSPSVAFSHYEQHP
HGTPGRQSLFDRKRIPEIVLNNFNHPHVPGDEDEDDFKVIIQEPTSKRNRTVSYGDEPPD
YDDATANGDLKNYTTLVHQNGVVSLASKEDDRSAGRGTPPLLPVLLPEVVVDRADSYRIK
SNGDEDHAIRMDGLQPVVRSRLPSVDLLSEPQLEMIKMRAMSQASIMTAELSKPPQRCCN
CWLKFANLFCKWRCCGCWIYFHKICRKICLDPFLDLFITICIVVNTGFMTAEHQPMDEGF
RSVLNAANYIFTVIFAFEMVVKMVGLQPYYYFQEAWNCFDAMIVTISLLEIPIAYLSGSG
SESSGLSVLRTFRLMRVFKLAKQWPTLNKLIQIIGNSMGSLGNIILVLLIILFIFAVVGM
QLFREKYELAELAYGRSRWHMKDFFHSFLIVFRILCGEWIETMWDCMRWGEEVSFLCIPV
FLLAQVIGNLVILNLFLALLLSSFSGDSLSSDEEEEQELNSIQLSKLRFRRWFNFIKIKS
RALLHSCRQKLVDTKRLTHCSNVGTLAGNGLVKQKQINKVGFSPDLNKCEKLDMELLDGG
AITISSQDISKNNVITSRITSENDFCNVKMFQDVVIQVPLAEEERDTDSSDGELDSRFSD
SDSLPVDSSDDDESCSTDHENAFSVDMNAPVPKSEEEEDQPAQCWPACFIRKCACFDPPV
DEGCCHTWWNMRKICFRIIEHPWFESFIILMILLSSAALAFEDIYYRDRVVLRRVLKYAD
RIFTYVFIFEMILKWVGYGFKKYFTNAWCWLDFIIVGVSIIGLVAEILEMDNISSIRSLR
TLRALRPLRALSRFEGMKVVVNALVGAIPSIFNVLLVCVIFWLIFSIMGVNLFAGKFWKC
INDTSGEKLPAFNFTMENYTYPIINKTVCHEIHNITSEIRWKNGKVNFDNAGIGFLALLQ
VATFKGWMDIMYDAVDMTQQDQQPVFENSKMLYLYFVTFIVFGAFFTLNLFIGVIIDNFS
QQKKKLGGDIFMTKEQRKYHNAMKKLGSKKPQRPVPRPKNDFQAWIFDIVNHQSFEITIM
VLILLNMVTMMVESHGMSDELRNTLEFTNYVFVAIFSGEALLKLFALRHHYFKNPWNTFD
FLVVILSIIGITMKKIISQYFVQPTLFRLIRLARIGRILRLIRGAKGIRTLLFALMMSLP
ALLNIALLLILVMFIYSIFGMSQFAYVHRGGGNDDMFNFQTFSNSFLCLFMITTSAGWAS
LLNPILDSGLPDCDPDLDNNNPNNTGNCGNTALGIFFFVTYVIFTFLIVVNMYIAIILEN
FGVATEESTEPLGDDDFEMFYEEWERFDPKATQFIAYENLSDFVDNLNHPLRVPKPNKQS
LIAMDLPMVMGDRLHCLDVLFALTKRVWGESDELEGVRSQMEEKFMASNPSKLSYEPITT
TLRRKNDEISAIIIQRAWRCYRIRNTVHKASKVFLGLSLCSDPEDEYEVDVHAEEQSEMS
IHIDEHCENNNLNVNSNINSIIESDNNSLIQNEGNEENSEKTETSSEDISNKEDDRPLLH
HKDTSSSHNLLLPDNENN

Nucleotide sequence

Length: 6,822

>Moocul.CG.ELv1_2.S120678.g14167.01.t
CTTAAATAAGTAACTCCACACGCCAGGATTGTCACTTGGAACGAAACATATTAATGAAAT
ACTGGGATTTATTTAACACAATGTTAACTAATTAAAAAGGAAGTGGCCAATTATCAGCAA
AATGTCTGCCGTTGCTGGAAACGAACTTATTGACATTAAAGTCGTTCCGCTTACTCAAAA
ATACATCAACTCCAAACCGAAGAAAGAAAAACCAAAAGCAAGTCTCCGGTCAAAAGACGG
TGGACGTTCGAGTCGCATGAGCAATGATAATGAATTAGGAAAGCCAAATATTGATCTGGA
GCAAGGAAAAACATTGCCAGAATACCTGCAAGGGGATTTGGATGACAGTTTTCTCCAGAA
ACCAATCGTTGACCCGGATCCCTACTATGAAGCCTCACGGGGGACTTACGTGATATTCGA
CAAAAACAAAAGCATCTACAGGTTCAATACGCAACGAGGCTTTTATATCTTTGGCCCACT
CAACCCCATCCGAAGAGTTGCCAACCGAATACTTATCGACCCAATATTTAATTTTTTAAT
AATGGCGACCATTTTAATCAACTGTGGCTTCATGACTATGAGCAGTGATATTTGGTGGGT
CAACAACTACGTCGAGCGAATATTTTTGGGGATTTACACGTTTGAAGCAATCGTAAAATT
ATTATCTCGCGGGTTCGTTATAGGAAATTTTACGTATCTCCGTGACCCCTGGAATCTGCT
GGATATTAGCGTAATTGCAACCGCATATTTAGACATTGTGATGGCCATAATGGCAAGTAA
CTCTGGCGAAGAAGCCCAGAAGATACCTGGAATGGCAGCACTGAGGGCATTTCGTGTGCT
ACGAGCATTAAAGGCAATATCAGTCATCCCTGGCTTAAAAGCAATTGTTTCTGCGCTTAT
TGAATCAGTAAAAGCGCTGAAGGACGTGATGATTTTGACCTTCTTTGCATTATCCGTGTT
TGCTTTAATCGGTCTTCAGTTATTTATGGGGAGTTTGCGTAACAAATGTGTGCGTCAATG
GCCTCCTAATCATAATCCTTTTGTGGAAGCAATGTGGCTGGAGCAAAATTACACCAATTA
TGATTCCGTCTATGATCAACTTGTGTTTAATTCGACTTACACTCCTTCTGGTGACATTAA
ATTAAACTACACTGTCTCGCCACCAATGAACTGTGATCCCAATCCCTCCCCCAATTGCAC
AGACGAATCAAAGGTCTGGTTCAATCAGAGTTATTCTGAATGGATCAACAATGACTGTAA
CTATTGTTTTGTCAACGAAGCGGCATGGTTATGTGGTAACTCTTCCTCGGCAGGGAAATG
CCAGGACGGATTCGTGTGTATGGAAATTGGTGAAAATCCAAACTTTGGATATACCAGCTT
CGATCACTTTGGCTGGGCGTTTCTGTCACTTTTTCGTCTCATGGCACAGGATTACTGGGA
AAACTTATATCAAATGAGTGATTCAATCCCTTCTTCCATCTTTACCTTCCCACTCAAGTT
AGTTATTTCAAGAGCAATCGATGGAACTTTAAGGCGCAATTACAACCCCGACCATCCATT
AACGACAATCGATAAATGCAGTTGCTTAACAGACATTTTGGATGAAGGCACGCTTCGTTC
AAATGGTAAAGGGGTTATTTGGTTTTTCTTTATGGGAATATTTCTTGGATCATTTTATCT
CATCAACTTGATATTGGCTGTCGTGGCAATGGCATATGAAGAACAACATGAATTGGTGGA
AGAAGAAGAAGAAAGAAAAAGAGAACTTCTGATGCGAAAAAAGAATGAAATCGAACAGTT
GTTAATGGAAGTGCACGCAGCTGAGGAAAAACTTGAAAGTCGAAGGGCGAGTCGTGCTTG
TACATTAGAATCTCGATCATCATCGAACGCATCATTACATTCTGGTGTAACACATTTCGG
AAACACATCACTGTACCGTACAGAGAGTATACGGTCAAACCGGTCCGCACGAAGAAGGGG
CAGCGTATTCTCCGCTTTTAGATCAATTGCGGGTTACAACAAACACGGCGATTTGGAAGA
TAATGTCAGCAGAGGAAGCCGTTCTCCATCGGTCGCGTTTTCACATTACGAACAACATCC
TCATGGTACACCTGGTCGACAGTCACTCTTCGATAGAAAACGAATTCCTGAAATTGTCCT
TAACAATTTCAACCATCCACATGTACCAGGCGATGAAGATGAAGATGATTTTAAAGTTAT
CATCCAAGAACCAACTTCAAAAAGAAATCGAACGGTTTCATATGGCGATGAGCCGCCTGA
TTACGACGATGCTACTGCAAATGGTGACTTGAAAAACTACACAACACTTGTACATCAAAA
CGGAGTGGTTTCATTGGCATCAAAAGAAGACGACAGAAGCGCGGGTAGAGGCACTCCGCC
TCTTCTTCCAGTACTTCTTCCGGAAGTTGTTGTAGATAGAGCAGACTCATACCGCATCAA
GTCAAATGGTGATGAGGACCATGCTATTCGAATGGATGGTCTTCAACCTGTTGTTCGTTC
TCGACTTCCATCCGTTGATTTACTTAGTGAACCACAACTGGAAATGATTAAGATGCGAGC
TATGAGTCAAGCTTCCATAATGACTGCAGAACTTTCCAAACCTCCTCAAAGATGCTGCAA
CTGTTGGTTGAAATTTGCAAACTTATTTTGCAAGTGGAGATGCTGCGGTTGTTGGATATA
TTTTCACAAGATTTGCAGGAAAATATGCTTGGATCCTTTCCTGGATCTCTTCATCACGAT
CTGCATTGTAGTAAACACTGGCTTCATGACCGCAGAACATCAGCCAATGGATGAGGGTTT
CCGAAGTGTACTCAACGCCGCAAATTATATCTTCACGGTTATATTTGCGTTTGAAATGGT
AGTGAAGATGGTCGGATTGCAACCGTACTACTACTTCCAAGAGGCATGGAATTGTTTTGA
CGCCATGATTGTTACAATATCACTCCTCGAGATTCCCATCGCTTATTTATCTGGTTCTGG
CAGTGAAAGTTCTGGATTGTCTGTGCTAAGAACATTTCGACTGATGCGAGTTTTTAAACT
GGCAAAGCAGTGGCCGACGTTAAACAAGTTGATTCAAATCATCGGAAACTCGATGGGATC
TCTCGGAAACATCATCTTGGTTCTTCTTATCATCCTCTTCATCTTTGCTGTTGTTGGGAT
GCAATTATTTCGGGAGAAATATGAACTTGCTGAGTTGGCATATGGGAGATCTCGTTGGCA
CATGAAGGACTTCTTTCATTCCTTTTTGATCGTGTTTCGCATTTTGTGTGGAGAGTGGAT
CGAGACTATGTGGGATTGCATGAGATGGGGAGAAGAAGTATCATTTCTCTGTATTCCTGT
CTTTCTGCTTGCCCAAGTGATTGGAAACCTGGTTATATTGAATCTCTTTCTTGCTCTGCT
GCTTTCCTCCTTCAGTGGAGATTCTCTTTCAAGTGACGAAGAAGAAGAGCAAGAATTAAA
CAGCATCCAACTCTCCAAACTTCGATTTAGACGATGGTTTAATTTCATTAAGATCAAATC
AAGGGCACTTCTGCACTCTTGCAGGCAAAAACTTGTTGACACCAAAAGGTTGACGCATTG
CAGTAACGTTGGTACGTTAGCCGGAAATGGACTTGTAAAGCAAAAGCAAATCAACAAGGT
CGGATTTTCACCGGACCTGAACAAATGCGAGAAGTTGGACATGGAGTTACTTGATGGGGG
CGCAATAACTATCAGCAGCCAAGATATCAGCAAGAATAACGTGATTACAAGCCGCATAAC
TTCAGAAAATGACTTTTGTAATGTCAAAATGTTCCAGGATGTTGTTATACAAGTTCCGCT
TGCGGAGGAAGAGAGAGATACGGATAGCTCGGACGGTGAACTCGATTCAAGATTTAGCGA
CAGCGACTCGTTGCCGGTGGATTCATCTGACGATGACGAGTCATGTTCTACTGACCACGA
AAATGCATTTTCAGTTGACATGAATGCTCCTGTTCCAAAGAGTGAAGAGGAAGAGGATCA
ACCAGCTCAATGTTGGCCTGCATGTTTCATCCGAAAATGTGCATGCTTCGACCCTCCAGT
TGATGAAGGTTGCTGTCATACTTGGTGGAACATGAGGAAGATTTGTTTCAGAATTATTGA
ACATCCTTGGTTTGAAAGCTTCATCATTCTGATGATCCTCCTAAGTTCAGCAGCATTGGC
GTTTGAAGATATTTACTACCGTGATCGTGTCGTTCTGAGAAGAGTTTTGAAATATGCAGA
CAGGATTTTCACTTATGTTTTCATCTTTGAAATGATATTGAAGTGGGTTGGATACGGTTT
CAAAAAATACTTCACAAATGCTTGGTGTTGGCTCGACTTCATCATAGTTGGTGTTTCTAT
TATCGGTTTGGTTGCTGAAATACTTGAAATGGACAATATTTCCAGCATCAGATCACTCAG
AACTTTGAGGGCACTTCGACCATTAAGAGCTCTTTCCAGATTTGAGGGAATGAAGGTTGT
CGTAAATGCTCTGGTCGGTGCAATACCTTCGATCTTCAACGTGTTGCTTGTGTGCGTCAT
CTTCTGGCTAATATTTTCGATCATGGGCGTCAATTTGTTCGCAGGAAAATTTTGGAAGTG
TATTAACGACACAAGCGGTGAAAAACTGCCAGCTTTCAACTTCACAATGGAAAATTACAC
ATACCCTATCATTAACAAGACAGTGTGCCACGAAATACATAATATAACAAGTGAAATTCG
TTGGAAGAACGGGAAAGTGAACTTCGACAATGCTGGTATTGGTTTTCTTGCTTTGCTTCA
GGTGGCCACATTCAAAGGATGGATGGACATTATGTACGATGCAGTGGATATGACACAGCA
AGACCAACAACCCGTGTTTGAAAACTCTAAGATGCTTTATCTATACTTTGTTACCTTTAT
TGTTTTTGGAGCTTTCTTTACTTTGAATCTATTCATTGGTGTGATCATCGACAACTTCAG
TCAACAGAAGAAGAAGCTTGGAGGAGATATTTTCATGACAAAAGAGCAGAGGAAATATCA
CAATGCAATGAAGAAACTTGGATCTAAAAAACCTCAGCGTCCTGTCCCACGACCAAAGAA
TGATTTCCAAGCTTGGATATTTGACATTGTGAACCATCAGTCCTTCGAGATTACAATTAT
GGTGCTGATTCTCCTTAATATGGTAACCATGATGGTGGAGTCACATGGGATGAGTGATGA
GCTTCGAAACACACTTGAGTTTACAAATTATGTGTTTGTTGCCATATTTTCTGGTGAAGC
ATTGCTAAAGTTATTTGCACTTCGCCATCATTACTTCAAGAATCCGTGGAACACTTTTGA
TTTTCTTGTTGTCATTCTGTCTATAATTGGAATCACAATGAAGAAAATTATTTCTCAATA
CTTTGTCCAGCCAACACTGTTTCGTCTGATTCGATTAGCACGTATCGGACGTATCCTACG
TTTGATTCGTGGCGCGAAAGGCATCAGAACACTTCTATTTGCACTGATGATGTCACTTCC
GGCTCTGCTTAATATCGCTCTTTTGTTGATACTTGTCATGTTCATTTATTCTATCTTCGG
AATGTCACAGTTTGCATACGTTCATAGAGGTGGAGGAAACGATGATATGTTCAACTTCCA
AACATTCTCAAATTCCTTCCTCTGCCTCTTCATGATCACAACATCTGCAGGTTGGGCAAG
TCTATTAAATCCCATATTGGATTCTGGGTTGCCAGATTGTGATCCAGACCTTGATAACAA
TAACCCGAATAACACCGGAAATTGTGGCAACACTGCACTGGGTATCTTCTTCTTTGTAAC
GTATGTTATCTTCACGTTTTTAATCGTCGTCAACATGTACATCGCCATTATTTTGGAAAA
TTTTGGAGTGGCAACGGAAGAAAGTACGGAACCGCTTGGTGATGATGATTTTGAAATGTT
TTACGAAGAATGGGAACGATTTGATCCAAAAGCAACTCAGTTCATTGCTTATGAGAATTT
ATCAGACTTCGTTGATAACTTGAATCATCCTTTGCGCGTTCCCAAACCTAATAAACAGAG
CTTAATTGCAATGGATCTGCCCATGGTGATGGGTGACAGATTGCACTGCTTGGACGTGTT
GTTTGCTCTCACGAAACGAGTTTGGGGAGAAAGCGATGAACTTGAAGGCGTTCGATCGCA
GATGGAAGAAAAATTTATGGCTTCGAATCCATCGAAATTGTCGTACGAACCGATTACGAC
GACACTTCGTCGAAAGAATGACGAAATATCAGCGATAATTATACAACGTGCGTGGCGATG
TTATCGCATACGAAACACCGTTCATAAAGCTTCGAAAGTCTTTTTGGGATTGAGTTTGTG
TTCCGATCCGGAAGATGAATATGAAGTGGATGTTCATGCAGAAGAACAAAGTGAAATGTC
GATCCACATCGACGAACATTGCGAGAATAATAATTTAAACGTAAATAGCAACATAAACTC
AATTATTGAAAGCGATAACAATTCGCTTATACAAAATGAAGGCAACGAAGAAAATTCGGA
AAAAACCGAAACATCGTCGGAAGATATTTCAAATAAAGAAGACGATCGTCCGTTGTTACA
TCACAAAGACACGTCATCATCACACAATTTACTGTTGCCTGACAACGAAAACAACTAATC
ATTGTTACATTACAATTAATACTTAAAAAGGCGGGAAAGCGTTAAAACACTATCTGGTGG
ACCAGACGATATTTGTATGCATGCGAACTTCTACAATCTTGTATATCTAAATATGCTATA
ACATTCTATTGTACAATAACACATTACTTTAACGGCAATACG

InterProScan

Gene3D
Volt_channel_dom_sf (IPR027359) - T[125-250] 3.0E-19 - T[862-985] 5.4E-32 - T[1332-1455] 8.6E-29 - T[1663-1785] 1.1E-40
Pfam
Ion_trans_dom (IPR005821) - T[134-538] 3.4E-69 - T[872-1105] 3.2E-51 - T[1341-1625] 9.4E-64 - T[1672-1927] 2.9E-52
Pfam
Na_trans_assoc (IPR010526) - T[1117-1337] 9.5E-17
PRINTS
Na_channel_asu (IPR001696) - T[1900-1919] 2.5E-11 - T[1935-1948] 2.5E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SCN1A_HUMAN 48.023 % 1729 0
SCN2A_HUMAN 47.081 % 1761 0
SCN3A_HUMAN 47.399 % 1719 0