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TRANSCRIPT CARD

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  1. Clone 'CCAO13904' > 
  2. Transcript 'Harore.CG.MTP2014.S1...' > 
  3. Transcript 'Boleac.CG.SB_v3.S51....' > 
  4. Transcript 'KH2012:KH.C14.422.v1...' > 
  5. Transcript 'Moocul.CG.ELv1_2.S12...'

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S123185.g14406.01.t

Possible name(s)

RNPS1; SAFB; SAFB2

Gene model

Moocul.CG.ELv1_2.S123185.g14406

Location

S123185 [2,141 / 15,884]

Sequences

Amino acid sequence

Length: 1,265

>Moocul.CG.ELv1_2.S123185.g14406.01.p
MNSHCSFKQIGKDNETASTAEPQTEDADEDTNELKTNEQDVYEEDKSNDVNEQEAVLNEV
VSKEREDLPSRDLEDEDIHENGDDDVDEPASNEVEVDKDSIDETETGEGNKTTASNEEEP
PLNEDEMQILDQDESLDSNQEENQDDDAAVMEDNQEEESADVLEESGSMEQDDTLEEAKD
DQLEEMANDEKAGEGKEASSRFQEEDDKQEEMEADAEEEAVADDDDENLQAEEEIGDEEN
NKMDEEIHENAETMEEDTGAEQAPMDSDQNEEEDKKEEKVEIVEEEELETVSAEDSTVTE
KQIDNKKSKDHGMEVDVLDMLDYDIDMPESGEDKQQAGKQQTTEDETVTKDSKDSSKESD
ISSTKTEETKEPKRDDTKSSVPPKRNLWISGLSSSTRASELKTAFSRYGKVTSAKIVTNA
KSPGSRCYGYVSMATEDAASKCILHLNETEMQGRLITVEIVRGLIAKTDPSVPRKTNSSN
NKSSTTTNKTSVATTTTKAAKEKVTETKKLNESASNKDSETKSNVRRLSTKDTKDGQTNK
NDSPKDGKTKISTRPGTRGKSDKTNSGAKRVGEGDLREKVPVRKRQKHPDNKSADIDRKV
VIDTNKGELRVNVNSDRPTNRRNAANNRQGNKRPMNRAGIRRRDDGLSPVRTTGVKRGIG
RGDARNRLSGRNASGAQNNNAGRKTNKKAPLLSFDEIRARSQNMRPSASQNPSRRNDGLS
PPRRNTQRDLNASLNRERERLRKEREQREKILRLERDRLEREKRALEKDKLERERLEQER
LRVEMERKRELERIEREKAEMRRLSELNRVEIEQRQRAVKRYASDDYTSSDRHRSSGRST
NRDTYEPKRAMLSSDRDHTSSRSDKRERETSRRDNNYSSSYNSSRGSGALPRSDSPYRGG
TQSTATYRKSNDYSSSSQTRRPTGRTSTQESSTRYSGPSSDHASRDTYSSSSRTGRQTSG
HRLRVEKKVKKSQLFSLRNAVGSRDKFHAMIPPKVAAGQNHVEILNPYEKIVSSSPGKIS
KFHHNGINGLFRMEKPRTSGGRIEIQRIPQSPPSRGHDTSPPIRRRERSPVSDTRWRESG
KSSSARRETTSRSGDRGGDLREEIRGSRQSSSYTTSDRDEQRSRTTSRRRSNTPERTAQF
NTRWPAGAETTTPAAANPTLYAVNSHQLASQRSTAATWQSQLSSWQTATSTAARNGWLGA
LQASAVGRATHQITPSPYVAPTLSLPPPVTTIIPTAQPTYQMNSDRASRTIDDRFQQYKP
ITRRY

Nucleotide sequence

Length: 4,000

>Moocul.CG.ELv1_2.S123185.g14406.01.t
ATGAATTCACACTGTTCGTTTAAGCAGATTGGAAAAGACAATGAAACTGCGTCAACAGCT
GAACCACAAACGGAAGATGCTGATGAAGACACAAATGAACTCAAAACTAACGAACAAGAT
GTCTACGAAGAAGATAAATCTAATGATGTAAATGAACAGGAAGCCGTTTTAAACGAAGTA
GTTTCCAAAGAAAGAGAAGATCTTCCATCAAGGGATCTGGAGGATGAAGATATTCATGAA
AATGGAGATGATGATGTTGATGAACCAGCCAGCAACGAGGTGGAAGTGGATAAGGATTCA
ATCGATGAAACAGAAACTGGAGAAGGTAACAAAACAACAGCATCAAATGAAGAAGAACCA
CCTTTAAATGAGGATGAAATGCAAATCCTTGATCAAGATGAATCGCTTGATTCAAATCAG
GAGGAAAACCAGGATGATGATGCTGCTGTGATGGAAGACAACCAGGAGGAGGAATCTGCT
GATGTTTTGGAGGAATCTGGGAGTATGGAGCAAGATGACACACTAGAGGAGGCAAAGGAT
GATCAATTGGAAGAAATGGCAAATGATGAGAAGGCTGGTGAAGGTAAAGAAGCTTCCTCT
AGGTTCCAAGAAGAGGATGACAAACAAGAGGAAATGGAAGCTGATGCTGAAGAAGAAGCT
GTTGCAGATGATGATGATGAAAACTTGCAAGCTGAAGAAGAGATTGGGGACGAAGAGAAT
AATAAAATGGATGAAGAAATTCATGAAAATGCTGAAACCATGGAAGAGGACACTGGTGCT
GAACAAGCTCCAATGGATTCTGATCAAAATGAAGAAGAGGATAAAAAAGAAGAAAAAGTT
GAAATTGTTGAAGAAGAAGAACTTGAGACTGTTTCTGCAGAGGACTCAACCGTAACAGAG
AAGCAAATTGACAACAAAAAATCAAAGGACCATGGCATGGAAGTGGATGTTTTGGACATG
TTGGATTATGATATTGATATGCCGGAATCTGGTGAAGATAAACAACAGGCTGGCAAACAA
CAAACTACGGAGGATGAAACTGTGACAAAAGACAGTAAAGATAGTTCGAAAGAAAGTGAT
ATTTCTAGTACTAAGACCGAAGAAACTAAAGAACCAAAGAGGGATGACACTAAATCATCA
GTTCCCCCGAAACGCAACTTATGGATCAGTGGTCTCTCCTCTTCCACTCGTGCCAGTGAA
TTGAAAACAGCATTCTCCCGATATGGAAAGGTTACAAGCGCCAAGATTGTTACCAACGCT
AAAAGTCCAGGTTCCCGTTGTTATGGTTATGTCTCCATGGCAACTGAGGATGCAGCAAGC
AAATGCATTCTTCATTTAAATGAAACGGAGATGCAGGGAAGACTCATCACTGTCGAAATT
GTTCGTGGTCTTATTGCTAAAACTGATCCTTCGGTTCCCCGAAAGACGAATTCTTCCAAC
AATAAATCCAGCACAACCACAAATAAAACATCGGTTGCAACAACTACAACTAAAGCTGCA
AAGGAAAAAGTAACGGAAACCAAAAAATTAAATGAATCAGCTTCAAACAAGGACTCTGAA
ACAAAATCAAATGTTCGTCGTTTAAGCACTAAAGATACGAAGGACGGACAGACAAACAAA
AATGATTCACCTAAAGATGGAAAAACAAAGATCTCAACTCGTCCTGGAACTCGTGGGAAA
TCGGACAAAACAAACAGTGGTGCGAAACGTGTTGGAGAAGGTGACCTTCGTGAGAAAGTT
CCTGTTCGTAAACGTCAAAAACACCCAGACAACAAATCGGCAGATATTGATCGCAAAGTT
GTCATCGATACAAACAAAGGAGAACTTCGTGTTAATGTTAATTCCGATCGACCAACAAAC
CGTCGTAACGCTGCCAATAATCGTCAAGGCAATAAACGACCAATGAATCGTGCTGGTATT
CGTCGTCGTGACGATGGGTTATCTCCAGTTCGAACTACCGGCGTTAAGCGTGGTATTGGA
CGAGGGGACGCAAGGAATCGTCTCAGTGGTAGAAATGCCAGTGGAGCGCAAAATAATAAC
GCAGGTCGAAAGACTAATAAAAAAGCCCCATTGCTATCTTTCGATGAGATAAGAGCTCGT
AGTCAAAATATGCGTCCGTCGGCTTCGCAAAACCCGTCACGGCGGAATGACGGCTTGTCT
CCACCTCGAAGAAATACACAACGAGATCTCAATGCGTCGCTCAACCGAGAAAGAGAAAGG
CTGCGAAAGGAGAGAGAGCAAAGAGAAAAAATTCTGCGATTAGAGAGAGATCGACTTGAA
CGAGAAAAAAGAGCACTTGAAAAAGATAAATTGGAGAGAGAAAGATTGGAGCAAGAGCGA
CTTCGTGTTGAAATGGAACGCAAACGAGAGCTGGAACGAATCGAACGAGAGAAGGCAGAA
ATGAGACGACTCTCTGAACTTAACAGAGTTGAAATTGAACAACGTCAGCGAGCAGTCAAG
CGTTACGCTTCGGATGACTACACAAGTAGCGATCGTCACAGATCATCGGGAAGGTCAACC
AACCGTGACACATATGAACCGAAGCGTGCAATGTTGTCATCAGACCGTGACCATACGAGC
AGTCGAAGTGATAAACGAGAACGAGAGACAAGTAGAAGGGACAATAATTATTCGAGCAGT
TACAACAGCTCACGAGGAAGTGGTGCACTACCGCGATCTGATTCGCCATACAGAGGCGGG
ACACAGAGCACGGCGACGTATCGCAAGAGTAACGATTACTCTTCTTCATCGCAGACACGA
AGACCTACTGGCCGTACAAGCACTCAAGAAAGTAGTACCAGATACTCTGGTCCGAGCAGC
GACCATGCATCCCGTGATACATACTCGTCATCATCTCGAACAGGAAGACAAACAAGTGGC
CATAGACTACGCGTGGAAAAGAAAGTTAAAAAATCTCAACTTTTCAGTTTGCGGAATGCT
GTGGGGTCACGTGACAAATTCCACGCTATGATTCCCCCGAAAGTCGCAGCAGGGCAGAAC
CACGTAGAAATTCTAAACCCGTACGAGAAGATCGTAAGCTCGTCACCAGGGAAGATAAGT
AAGTTTCATCACAACGGGATCAATGGTTTATTTCGAATGGAGAAGCCGCGGACAAGCGGT
GGACGAATCGAAATACAAAGAATTCCACAATCTCCGCCTTCAAGAGGACATGATACTTCT
CCACCAATCAGACGTCGTGAACGATCACCTGTGTCTGACACTCGATGGCGTGAGAGTGGC
AAGAGCAGTAGTGCACGGCGTGAAACTACATCTCGAAGTGGCGATAGAGGGGGAGACTTA
CGTGAGGAAATTCGAGGGAGTAGACAGTCATCCTCGTATACGACCTCAGATCGTGATGAG
CAACGAAGCAGAACAACATCTCGTCGTCGCAGCAACACGCCTGAACGAACAGCACAGTTT
AACACTCGGTGGCCTGCTGGAGCAGAAACTACAACGCCGGCCGCCGCAAATCCAACGCTG
TATGCTGTAAACAGCCATCAGTTGGCGTCACAGCGTAGTACCGCAGCAACATGGCAAAGT
CAATTATCGTCATGGCAGACCGCCACCAGCACAGCAGCAAGGAATGGATGGTTAGGAGCT
TTACAAGCATCTGCTGTTGGACGAGCAACGCATCAAATCACTCCGTCACCCTACGTTGCT
CCAACCTTGTCTCTGCCACCTCCAGTGACCACAATTATCCCAACTGCCCAACCGACGTAC
CAAATGAACTCTGACAGAGCGTCAAGGACAATTGATGACAGATTTCAACAATACAAACCA
ATTACGCGAAGATACTGATCATTGTTCATCAGATAATGACCATCTGTGATCTCGCTGACC
AAAATTCAACAGATCGAAGAATGTACATTTCAAATGTTGTGATTTGATGAAACAATAATA
AACTCATCTTCGTGTTTGTTTTTATCATTACCTGTAAATTCAAAAATTCTGTTAGTGGCT
GCCCATTTTATCTGTTAAAAATAAAGAAACAACATTTCAA

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[319-463] 5.6E-28
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[378-463] 6.92E-22
ProSiteProfiles
RRM_dom (IPR000504) - T[385-463] 14.59
SMART
RRM_dom (IPR000504) - T[386-459] 5.5E-20
Pfam
RRM_dom (IPR000504) - T[387-456] 1.6E-12

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SAFB1_HUMAN 49.074 % 122 3.39E-28
SAFB2_HUMAN 57.426 % 127 1.08E-29