- Transcript 'Moocul.CG.ELv1_2.S14...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S14164.g00465.01.t
Possible name(s)
RARA; RARB; RARG
Gene model
Location
S14164 [24,898 / 29,964]
Amino acid sequence
Length: 518
>Moocul.CG.ELv1_2.S14164.g00465.01.p
MNMVAFQEQWRSRMNGILTDMFYSQPTNGVMMMEPNPQMHNAMRNQQHSGAMHYPQQQTY
GLQYHQQQQPMVGNAMLHNQHGYQYHNGNWEFARTSPDSTGHSTGNITSGSESDHFAPSP
PSPPPPPRTYKPCFVCGDKSSGYHYGVSSCEGCKRRCEDNVIEANPCFNIYLTTAVFVDC
HDSIFANLFKVPSRVILGFFRRSVQKNMQYTCHRNQNCTISKATRSRCQFCRLQKCFQVG
MLKESVRNDRNKKRGKEKEAKSENNSTETIVTPPEIEKVIEAVKKAQEDTFPKLETLSKY
APPSAIVEESQKNAKNVNVQLWSKFSDLSTKSIIKIVEFAKNVPGFTDLSIADQITLLKT
ACLEILFLRLCTRFEPKTESMTFSDGLVLNRKQLQDCAFGPMTEQVFGFANSLQPLEIDH
TEGGLLCAICLICGDRAELQEPDKVELLQEPLVEALRCYTRRRRPENPTVFPKLIMKISD
LRCIGFKGSTQVLSIKDSVPSNCVPPLMKEMLVNEDND
Nucleotide sequence
Length: 2,643
>Moocul.CG.ELv1_2.S14164.g00465.01.t
GATGGTTGCTGGTAATTTAGTGTTAGCCGCAGGCACATACAGATTGCACTCGAACAGCTA
CTGCGATCAGCCAACCAAAATATGTATTCAGTTTTGTAAAAAGCCGATCAAGTACGGTTA
GTTTATAGAGTTTAGATGAAATGTTTATAGTGAGAGTCGTCAAATGAATCATAGTTGGAG
CAACGCTTCTGATTAAGCATCGTATGTTATTGCTGAGTGTAATGCAGAATAAACTTCTTT
ACGTATTCGTTTCTTTATTATCATCTGCCTTTCTTTCTTCTCATGCGTATTACCGATGCC
ACTCGGCGCTAGCTTCTTATGCATTTGCGCGCAGTATCTGAAACGAAGGTTTTACAAAAT
GAATAAATACACAGGAAGTCGTACCGAGTATTTATCAGACACCTTTGCTTTAAACCTCAC
AGCATTGTTGCTTGCTTGGAAGAATGAACAAGGTATAGTGATGAGAGGTAAAGCAGGTAC
AAAGAGATATATCGCACCAGATTGCAGAAGCAGCCAGAAAGATTAAAATATTTTGTATTT
ACAAGATGATCTGTTAGTTGACTATCGTGCTACGCCCAAGGTTAATATGGTATTTGACAC
ATAAACATATGCCGTTTCGTTTTTAGGAAATATCATTTAAGCTTGTAAGGAAACGACAGT
TTGTTTATCATTAGCGTAGAACGATTTAACACCAAGTCGAGAAGATGAATATGGTTGCCT
TTCAAGAACAGTGGCGGAGTCGGATGAATGGCATACTGACGGACATGTTTTATAGTCAGC
CTACTAATGGGGTGATGATGATGGAGCCGAATCCGCAAATGCATAATGCTATGCGGAACC
AACAGCATTCCGGTGCAATGCATTACCCACAACAGCAAACGTATGGTCTGCAATACCACC
AACAGCAGCAGCCAATGGTTGGAAATGCGATGTTGCATAACCAACATGGTTACCAGTATC
ATAACGGCAATTGGGAATTTGCTAGAACCTCCCCAGACAGCACTGGTCATTCAACGGGAA
ACATTACTTCTGGCTCGGAATCTGATCATTTCGCGCCATCACCTCCATCCCCTCCTCCTC
CGCCACGGACATACAAACCATGCTTCGTATGTGGAGATAAATCGTCAGGTTATCATTACG
GAGTGTCCTCATGTGAAGGCTGCAAGAGAAGATGCGAAGATAATGTTATTGAAGCAAATC
CTTGTTTCAACATTTACTTAACAACTGCTGTATTTGTGGATTGTCACGATTCCATATTTG
CTAATTTATTTAAAGTTCCCTCTCGGGTCATCTTAGGATTTTTCCGTCGGTCTGTGCAGA
AAAACATGCAATACACTTGTCACCGCAACCAAAATTGCACCATTAGTAAAGCAACAAGAA
GTCGTTGTCAATTTTGTCGATTGCAGAAATGTTTCCAAGTTGGCATGTTGAAGGAATCCG
TTCGAAACGACCGCAACAAAAAGCGCGGCAAGGAAAAGGAAGCGAAAAGCGAGAATAATT
CGACAGAAACGATCGTTACACCTCCAGAGATTGAGAAAGTGATTGAAGCCGTGAAGAAAG
CCCAGGAAGATACTTTCCCGAAGCTTGAAACACTCTCAAAATACGCACCACCCTCAGCAA
TTGTGGAAGAATCGCAGAAGAATGCTAAGAACGTTAACGTTCAGCTTTGGAGCAAATTCA
GCGATCTGTCAACCAAATCTATCATAAAAATTGTGGAATTTGCGAAGAATGTTCCAGGGT
TTACGGACTTGTCAATCGCTGATCAAATCACACTTCTAAAGACAGCATGTCTTGAAATAT
TATTTTTACGCTTGTGTACACGGTTTGAGCCAAAGACGGAATCGATGACGTTTTCCGACG
GTCTCGTGTTAAACAGAAAACAACTGCAGGATTGCGCATTTGGTCCGATGACGGAGCAAG
TTTTCGGATTCGCAAATTCACTTCAACCTCTCGAAATCGACCACACGGAAGGCGGGCTTT
TATGCGCCATTTGCTTAATTTGTGGAGATCGTGCAGAATTGCAGGAACCCGACAAAGTTG
AACTACTACAAGAACCTTTAGTGGAAGCACTTCGATGTTATACGCGAAGACGAAGACCGG
AGAATCCAACAGTCTTCCCCAAACTCATAATGAAGATATCCGACCTCCGATGCATCGGTT
TCAAAGGTTCTACGCAAGTCTTGTCAATCAAAGATTCGGTTCCATCAAATTGTGTGCCTC
CATTAATGAAGGAGATGCTTGTCAACGAAGATAACGATTAAACAATAATTATTTACTCAT
TGCAAACTTTGCTCGCTCACTTGCAACCTCTCCTCACCATAGTAACAATTCGACCGGCCA
TTGGTCGAATGGCAACAAATGTTGCACATGGAGCAAATCTTGCGTATTCTTTTACAATCA
TTGGAAAGAAGTAACTAACATAAAATATTGCACCAATCTTGGATTAGCTTAAACAGCTAC
GGCTTATTATATTTGCGAAGCAACTAACAGTGTTACGTCATAATAGTTATGACGTCATTT
TTCTGTAATCTTTTGCCACTTTGTTTTTATGCAACCGATGTACATTACTTTATTTGTTGC
CTTTTTACGTTTCTTTATTTTCTTAGTTTACAGACGAAATATAAATCAAATCGCATAAGA
ACA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[122-169] 4.3E-8 - T[180-272] 3.6E-20 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[130-248] 15.0 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[130-244] 1.3E-28 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[132-154] 4.5E-8 - T[198-243] 5.7E-17 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[133-149] 2.8E-12 - T[149-164] 2.8E-12 - T[225-233] 2.8E-12 - T[233-241] 2.8E-12 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[202-213] 1.0E-5 - T[351-370] 1.0E-5 - T[416-438] 1.0E-5 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[225-512] 1.31E-65 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[237-247] 6.0E-29 - T[328-349] 6.0E-29 - T[349-365] 6.0E-29 - T[416-431] 6.0E-29 - T[473-490] 6.0E-29 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[323-485] 1.4E-20 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[327-485] 2.3E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 49.677 % | 416 | 4.69E-142 |
| RARG_HUMAN | 54.005 % | 387 | 1.36E-130 |
| RARA_HUMAN | 52.821 % | 413 | 1.11E-140 |