- Transcript 'KH2012:KH.C2.257.v2....' >
- Transcript 'KH2012:KH.C6.198.v2....' >
- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C7.222.v1....' >
- Transcript 'Moocul.CG.ELv1_2.S24...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S24758.g01051.01.t
Possible name(s)
PABPC1; PABPC4; SF3B4
Gene model
Location
S24758 [99,342 / 105,627]
Amino acid sequence
Length: 331
>Moocul.CG.ELv1_2.S24758.g01051.01.p
MAAGPISERNQDATVYVGGLDDKVKEPLLWELFLQAGPVVSTHMPKDRITGSHQGYGFVE
FLSEEDADYSIKILNMIKLFGKPIRVNKASAHQKNLDVGANLFIGNLDPEIDEKLLYDTF
SAFGVILQTPKIMRDPDTGSSKGYAFINFASFEASDAAMEAMNGQYLCNRPITISYAFKK
DSKGERHGSAAERLLAMQNPLSQADRPHTLFADAPVAPPLGASNMPPLSMPPAPPMGGVM
PPMPMGMPMPPPFQMPSGPPMPPPNMNMMDQSQWGGPPMGPPPPMGMPHGGPPMGPPMGG
SWAPPPPFGNQGGPPPPPMGGPPPPPITPGH
Nucleotide sequence
Length: 2,835
>Moocul.CG.ELv1_2.S24758.g01051.01.t
GAAAACTTTGTTCGAAGGCAGAACAAAGTTTTGGTTCTCACGGATGATTGTACTAAGATG
ATGAAATATAATCCTTCAAACAAAGAAGTAGAGGCAGTACTTGTATCGAAGCCTCCTACT
AACTTGTCATCCTTGCATGCCGTCATATACAGAAGCAAAGTGTAGGCCTATGTCGTTAGT
GCTCATGAGATTTATTGTTATGATTTTGTTTGTGAGTCATTGTGGGAAAAAGTTTCGGAT
GTGCCAGAGAGTTTAAGATTTTCAAATGAAGTTTTCACATTGGATAATATGAATTTTCGT
ATTGAACCTTCAATAGTTCTTCATGACAACAAAATAACAATTGCTGGTAATAATGGTATT
TGTGTTTTTGATTTTGAAAATAAGGACTGGAAATCAGTAGAATGTGCAGGTTACCGTGGA
CGGGACAATTCTACCATCATTTCACATACCGGTAACATAGTCAGAATAAAGATTACCATG
TTGCAATACCGTTGAGATCAATGGAAATTTTTAACACTATTACAGACAATATCTCGGTAT
GCAAGAATTCTCTTCCTTTTGGTAGACTTTTCCCTTGTTTTATGAATGGTATGTGTTATA
TCTTTTGTGATAAAACACAAGATGAAAGCAAAAACGACGAATCTTATGTAACAACATTCG
GTGGTAGCAAAGTTTTTCTGTTGTGAATTCACATTCACTGATAATTGCAACCATTGTCAT
GTCTCACTTAATATCTTATGTAACCATGTTCGTTCGGCGTATACCTTTCTCTGAAGTCAT
ATCCCCACTAACAATTGCATCGCACTCTGTTACACATTTTAATGAGTTGTATGTTGATTT
GATTAAGCCTACCCTGTGTGCTAGTTTTAGAAGTAAATAAATTATTGCAACATGGTGTGC
TTCAATTATTGTTTTGGTGTGGGCATATTCTAGCTAGAGTTGTCAAACCAAGCTCATTGT
GATCACTTCCTGGAGATTATTAATTTATGCATTGTGGTTTTCAGTGTTATTTATGTCCAT
TGATTTTTTTATATTCTATATAAAAAATGTGACTAATTAGCAATTTTGCAACATGATTTT
TCATCCGCCAATTTATTATGATTTCGGGACATTACTAATTTGGGACATGCTGGTTTGCTG
GATCCGATTTCTATCATTCTGCATTTTAAAATAGTCCTAGGACCATTAGGACGAACACAA
AGTACAGTTTTGCAGTCAATGCGGAATTAACTGCAAGCCCACACACATTTTTATCTCCAT
TTAAAATTTTATATTCATTCCGTCAAGCTTATAGTCCCGAAGTGACAAATAAACGAGACC
ATTCGAACCAACGATTCGAACACTACTGCTCTGAGCTATACTGTACATACTCGGTATCCG
ACTAACAACGTTCAGTGTACGTTACCGTACTGCAGAGAAAGAATTCACAGCTTTTCACTC
TCCAAGTGTTCCTCAGAAAATAGCATTTTTATTGCAAAAGTGTGAAGATGGCCGCAGGAC
CAATATCCGAACGTAATCAAGATGCAACTGTATATGTTGGAGGTTTGGATGATAAAGTGA
AGGAACCGCTTCTTTGGGAACTTTTTCTACAAGCAGGTCCGGTTGTCAGCACACATATGC
CCAAGGATCGAATAACAGGCAGTCATCAAGGTTACGGCTTTGTTGAATTTCTCTCAGAGG
AAGACGCGGATTATTCCATAAAAATCCTCAACATGATCAAGTTATTTGGGAAGCCAATTC
GAGTTAATAAAGCGTCGGCTCATCAGAAAAACCTTGACGTTGGCGCAAATTTATTCATCG
GCAATCTTGATCCAGAAATTGATGAAAAACTGTTGTATGACACTTTTAGTGCATTCGGAG
TTATCTTACAAACACCAAAGATCATGCGTGATCCTGACACAGGAAGCTCGAAGGGATATG
CCTTTATTAATTTTGCAAGTTTCGAAGCGTCTGATGCTGCAATGGAAGCAATGAATGGGC
AGTATCTTTGCAATCGACCAATCACAATCTCGTATGCTTTTAAGAAGGATTCTAAAGGAG
AAAGACACGGAAGCGCTGCAGAACGATTGCTTGCAATGCAAAACCCATTATCTCAAGCTG
ATAGACCGCATACGCTCTTTGCCGATGCTCCAGTAGCCCCGCCTCTTGGTGCATCCAACA
TGCCTCCATTATCAATGCCTCCTGCTCCTCCTATGGGAGGAGTTATGCCACCTATGCCCA
TGGGTATGCCAATGCCACCACCATTCCAAATGCCTTCAGGTCCCCCAATGCCGCCTCCAA
ACATGAATATGATGGACCAATCACAATGGGGTGGGCCACCCATGGGGCCACCTCCACCTA
TGGGTATGCCCCACGGTGGACCGCCTATGGGACCACCTATGGGTGGGTCTTGGGCACCTC
CTCCTCCATTTGGCAATCAAGGAGGGCCTCCACCCCCTCCAATGGGAGGTCCACCTCCAC
CACCAATCACTCCTGGACATTGAATTGTGAAAAATCTAATGTAACCAACAAAGGAGACTG
ATGAACGAAAGCTTTGCTATTTGAAAACTTTCATTACAATCATTGATGTGCGGCTATTTG
TCTATAAATGGTTTTATAAGAAAATAAAACAATGATAATATTAATTAAATTTATTTAGCA
GTGCAACTTGTACAAGATAAAAAAAAGTTAATGCCAAGGCAAATGCGCTATCGCCACATG
GCAGGAAGAAATGTAGACCTGTCCTAAACCATAGACTATACCTAAACAGTAAAAATTACA
CAGAAAAGTAGACTTGGTCTCCAACAGTGAAAAGTGTTAAGTTAAAAAAAATTTCCCCAA
AACAAACAAAATATC
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[5-95] 1.8E-25 - T[96-188] 5.9E-25 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[12-181] 7.43E-48 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[13-91] 16.909 - T[100-179] 17.114 |
| SMART |
RRM_dom (IPR000504) - T[14-87] 1.8E-22 - T[101-175] 1.5E-24 |
| CDD |
SF3B4_RRM1 (IPR034158) - T[15-88] 1.87347E-52 |
| Pfam |
RRM_dom (IPR000504) - T[15-85] 1.5E-14 - T[102-172] 8.0E-20 |
| CDD |
SF3B4_RRM2 (IPR034159) - T[99-181] 1.22953E-61 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B4_HUMAN | 92.417 % | 413 | 2.74E-144 |
| PABP1_HUMAN | 38.251 % | 124 | 1.17E-31 |
| PABP4_HUMAN | 40.437 % | 129 | 3.25E-33 |