- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C10.596.v1...' >
- Transcript 'KH2012:KH.C10.13.v1....' >
- Clone 'cicl083k20' >
- Transcript 'Moocul.CG.ELv1_2.S25...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S25117.g01091.01.t
Possible name(s)
SMCHD1
Gene model
Location
S25117 [36,583 / 42,616]
Amino acid sequence
Length: 2,010
>Moocul.CG.ELv1_2.S25117.g01091.01.p
MIVDEDEEESAFVFIFDQRTPDTTSKKIEIGGIFSFLEFFNELIKEFPYGKGESFVITTT
NRIVICDDESFLSHIESGDTLYLLKHADQELYSSVYEKIDFQPHYDTLIKSGVYEYYASE
GSVNPLPFAFAELIDNALAATARNQGKRNIDLKIYFNDADKQYVMSIQDNGVGMSPRQLN
NWAVYRLSKFNRRDRHIRNTESEQEIKQEDDSSGVSKSLNSDISWFGVGGKQAIFFIGGA
VRVITRSKGECDVHEFVLSKEEFRLKEANKESIYSGYIKNRQSGDTSHIPVSEKTTKKII
KNEQTLDDRVGFTNIVISNIDSQHISYIRDGFDKWTRQLAHIYHYYIHGTEGNTAMSKQR
KNIGAADVNITVSLQENGKKAHVISLNEIEDDQETLFIRTACDTFEFEIETADDNARIEG
IVRYHPFLYDKETYPVVNNNVKVEESDDEDYLPEDNVLKRRGNKAIFQSFWNGRLIPYTF
VQDFEWCKTPRKRGALPTECYERISGCLFTNDKFKVSTNKLTFIDLDTKLKNPNVTFNRV
ILGDRQVCNIHRQFYDWLRECHEKYDKQIKFINFIDHILHTSRQTKMLWTAYEAIEWEGK
LFKTGQLIRTCKMATTMFGKIQKFLLLGQHEGDTFAVGGEVEIIREPLEIYGETVNFSLT
KMDRTATKLSVQRLINSESANIPAKIVVASNGDGITDGYCMALGSNIGDMKIKVLSNKND
SIDKLITSSGPRKLLVEQKVYLISAKGSAKKSTKAKEISCNVSSYPYSFKPVRNIQIMGE
YSIDFQVLFASTGSSVLGDGKELPSLTINFSVTEAPPYKFMVGVLDSPLCIGTPFNIPLD
LQDKSNNPAKAVDCGRPVLKSSGLDLLFADYSVTENSVVVNNVVASGQVESQSGENFEMT
ITLPKLKQKTQSLKVRMLPGKPSDLMVQTVSCDEEEIEIEEEGYYLIRNRCKISIEVAMV
DQGGNMTSIKGKCKFQAKFAGNLGIQTFICDKKGSNAIATLTGKINVKKFKEETTVKAKI
SVQGNKGIQPLEVPFLIRPSLEPHSIAVYYQDPCAASEDENMKLKGGQAIYWHAGETISN
LTFELYDEAGRVVSVSRDIAERIKLNWIGQDEEENLNLEQGELPDVTVPLNTNDSKFCQI
VFSGNNNKSAQFSFYVKPVAGEPQSLKCDILGDRQVEIGVCRDELIKVAICDKHHNELVF
REDKVSSLSVRGTGLDEGLILKNVVKNCVILSGMQFNQGPIGSKELTIEYKHEDVVLKDH
VVIQLIAGTPVMMEVIGWPSFTQPMVIASGTKVKENIVVQLLDGWGNKSNQKGVRVVMSK
DNGLKLSPTLGPQLTDGTGSVKFSKFTVMAKKGEYALQPRAVFNHNAIEGPKLKVNVLPN
TETPVTLKVQYDKSIDTVTVGTSWPEFKVKVLTEEGEYVTSEVYVQMGIWKSSGKKNEKS
IPSNAELHKFHLSEPDIAVFHEISIPKIPGSYCIAFRITDTANSHSAILSSPVYKYSVIP
GEPQKIVAAVDPGIPTVSNAKLTVNRTIIRSLKLKLLDEFGNQCSHLYGGNIKITIEVAQ
ETLKSNAIPHFEGKCKSLTIPMKSSVAILQNICLKENCPGIDASEYILKCDVNCLALNEP
LEPYCLRFMFYNDVNKQQRMAALSKQSEALKKDIESYESLFKLHDTLLQEMKKSERELKA
EKTKILSDLRTSGMILSDNISNISINDRINIIKQQQKNFSKETRRTCRLQEYPGKGADII
GKVGHLALIEDDDIAKVLSWHLMGDFDCLITLTTSKAREVYNCTGGMQQVLPFDSIYKKN
LDDNRPLPHKRTPNKSFNPTGNPIYARNTLIFPKHEETCKVVFGMLIGDTIIMDSLASAN
QYRKEVVKYTYCPTILSRSGERIRSNGKFGGSQNKIASIEKLKGCVFGAPLGKKHQNFVN
QQRNLERLKVITEEMSGTEVELEIQEKSMDTEEMRTKRKEHEDAVRKLKELEKKLGVTPA
TEESSTSNKKHRFADSSKSAGPKKKRSRYK
Nucleotide sequence
Length: 6,033
>Moocul.CG.ELv1_2.S25117.g01091.01.t
ATGATAGTCGATGAGGATGAAGAAGAAAGCGCCTTTGTGTTTATTTTTGATCAACGGACT
CCGGACACAACAAGCAAGAAGATTGAAATTGGTGGGATTTTTTCGTTTTTAGAATTTTTT
AACGAATTGATTAAGGAGTTTCCATATGGCAAAGGTGAAAGTTTTGTGATTACCACAACT
AACAGAATCGTTATTTGTGACGACGAATCCTTTTTATCACACATTGAATCAGGTGACACA
CTTTACCTTTTAAAACATGCTGACCAAGAACTTTATTCTTCTGTGTATGAAAAAATTGAT
TTTCAACCTCATTACGACACGCTAATCAAAAGTGGTGTTTATGAATATTATGCCAGCGAA
GGAAGTGTTAACCCTTTACCGTTTGCCTTTGCCGAATTAATTGACAATGCCTTAGCTGCG
ACAGCGCGCAACCAAGGTAAACGAAACATTGATCTAAAAATTTATTTCAATGATGCTGAT
AAACAGTATGTTATGTCAATCCAAGATAATGGAGTTGGGATGTCTCCACGACAGCTCAAC
AATTGGGCTGTTTACAGATTGTCCAAATTTAACAGAAGAGATCGGCATATTCGAAACACA
GAATCGGAACAGGAAATCAAGCAAGAAGACGATTCCAGTGGTGTTTCTAAGTCTTTAAAC
TCGGATATTTCGTGGTTTGGTGTTGGTGGAAAACAAGCAATATTTTTCATTGGTGGTGCA
GTTCGGGTGATTACACGGTCAAAGGGAGAATGTGATGTCCATGAGTTTGTTCTTTCTAAA
GAAGAATTTCGACTGAAGGAAGCAAACAAAGAAAGTATTTATAGCGGATACATTAAGAAC
AGACAAAGCGGTGACACTTCCCACATTCCAGTGTCTGAAAAAACCACAAAAAAGATTATC
AAGAATGAACAAACTTTAGATGACCGAGTCGGGTTTACAAACATTGTCATCAGCAATATT
GATTCACAACATATCTCTTACATTCGAGATGGCTTTGATAAGTGGACGCGGCAATTGGCT
CACATATACCATTATTACATCCATGGAACAGAAGGAAATACTGCCATGTCGAAACAGAGA
AAGAATATTGGAGCAGCTGATGTCAATATCACTGTGTCATTGCAAGAGAATGGAAAGAAA
GCTCATGTTATATCTCTTAATGAAATTGAAGATGATCAAGAAACTTTGTTTATTCGGACT
GCATGCGACACCTTTGAGTTTGAAATTGAAACTGCCGATGACAATGCAAGAATTGAAGGT
ATTGTACGTTATCATCCATTTCTGTATGATAAAGAAACTTACCCTGTTGTTAATAATAAT
GTGAAAGTTGAAGAAAGTGATGATGAGGATTATCTACCTGAAGACAATGTGCTGAAGAGA
CGAGGAAATAAAGCAATCTTTCAAAGTTTTTGGAATGGGAGATTAATTCCTTATACGTTT
GTACAAGACTTTGAATGGTGTAAAACTCCACGCAAACGAGGGGCTTTGCCAACTGAATGT
TACGAACGCATTTCTGGATGCTTATTTACAAACGATAAATTTAAAGTGTCCACTAACAAG
CTCACCTTCATTGACCTTGATACCAAACTCAAGAACCCTAATGTGACTTTTAATCGTGTT
ATTCTTGGAGACAGACAAGTCTGCAACATCCACAGACAGTTTTATGACTGGTTAAGGGAA
TGCCACGAAAAATATGACAAACAGATTAAGTTTATTAATTTCATTGATCATATTTTACAC
ACGTCTCGACAAACAAAGATGCTTTGGACTGCTTACGAAGCAATTGAATGGGAAGGTAAG
CTTTTTAAAACTGGTCAGCTCATTCGCACATGTAAAATGGCCACAACTATGTTTGGAAAG
ATCCAAAAGTTTCTTTTACTTGGTCAACATGAAGGGGACACTTTTGCTGTTGGTGGGGAA
GTTGAGATCATAAGAGAACCTTTAGAAATTTATGGGGAAACTGTCAATTTTAGTTTAACT
AAAATGGACAGAACTGCCACAAAATTGTCAGTTCAAAGATTAATAAACAGCGAGTCTGCA
AATATACCCGCTAAGATTGTCGTTGCTTCAAATGGTGATGGAATCACTGATGGTTATTGT
ATGGCATTAGGTTCAAACATTGGTGACATGAAGATCAAGGTTTTGTCCAATAAAAATGAC
TCAATTGATAAACTCATAACCAGTTCCGGTCCCCGTAAGCTACTTGTTGAGCAAAAAGTA
TATCTTATTTCTGCTAAAGGATCTGCCAAAAAGTCAACAAAAGCTAAAGAAATATCATGT
AATGTTTCAAGTTATCCGTACTCATTTAAACCTGTGAGAAATATTCAAATCATGGGAGAA
TATTCAATTGATTTTCAGGTTTTGTTTGCAAGCACTGGTAGCTCGGTACTGGGTGATGGA
AAAGAATTGCCAAGTTTAACAATTAATTTTTCAGTCACTGAGGCACCCCCGTATAAATTC
ATGGTGGGAGTGTTGGACTCTCCTTTGTGTATTGGCACACCCTTTAACATTCCCCTGGAT
CTTCAAGACAAAAGTAACAATCCAGCCAAGGCAGTTGACTGTGGTCGACCGGTTTTAAAA
TCATCTGGCCTTGATCTCTTGTTTGCCGATTACTCCGTAACTGAAAATAGTGTGGTTGTT
AACAATGTTGTAGCTTCTGGACAAGTTGAATCACAAAGTGGTGAAAATTTTGAAATGACA
ATTACGTTACCCAAGTTAAAGCAGAAAACTCAGTCCCTTAAAGTGCGAATGTTGCCAGGA
AAACCATCCGATCTGATGGTACAAACAGTCTCGTGTGATGAAGAAGAAATTGAGATTGAG
GAAGAAGGTTATTACTTGATTAGAAATCGATGCAAGATTTCTATCGAGGTTGCAATGGTG
GATCAAGGTGGAAATATGACCAGCATAAAAGGAAAATGCAAATTTCAAGCAAAATTTGCA
GGGAATCTGGGCATACAAACATTTATATGTGACAAGAAAGGTAGCAACGCCATTGCAACA
TTGACTGGTAAAATCAATGTTAAAAAGTTTAAAGAAGAAACTACTGTGAAAGCAAAAATA
TCTGTACAAGGAAACAAAGGAATTCAACCTTTGGAAGTTCCATTTTTAATTCGACCTTCT
TTGGAACCTCATTCTATAGCAGTTTATTATCAAGACCCGTGTGCTGCTTCGGAAGATGAA
AATATGAAATTGAAAGGTGGCCAGGCGATTTATTGGCATGCTGGTGAAACGATCAGCAAT
TTAACATTTGAATTGTATGATGAAGCTGGTAGAGTGGTTAGTGTATCGAGGGATATTGCT
GAAAGAATAAAACTCAACTGGATTGGGCAGGATGAAGAAGAAAATCTGAATTTGGAACAA
GGGGAGCTACCAGATGTTACTGTGCCATTGAATACCAATGATTCAAAGTTTTGTCAGATT
GTGTTTTCGGGGAATAACAATAAATCTGCGCAGTTTTCTTTTTATGTGAAGCCAGTTGCA
GGTGAACCTCAATCACTGAAGTGTGATATTCTTGGAGATAGACAGGTGGAAATTGGAGTG
TGTCGAGACGAACTTATCAAAGTTGCAATATGTGATAAACACCATAACGAACTTGTTTTT
CGAGAAGATAAAGTGAGTTCTCTATCAGTACGAGGTACTGGACTTGATGAAGGGTTAATT
CTAAAAAATGTTGTCAAAAATTGTGTCATATTAAGCGGCATGCAATTTAATCAAGGACCC
ATTGGTAGCAAAGAGTTGACAATTGAATACAAACACGAAGATGTTGTACTAAAAGACCAT
GTTGTGATCCAGCTAATTGCTGGAACCCCAGTTATGATGGAAGTTATCGGTTGGCCATCG
TTTACCCAGCCTATGGTGATTGCAAGTGGAACGAAAGTGAAAGAAAATATTGTTGTGCAA
CTCTTGGATGGCTGGGGAAATAAGTCAAATCAAAAAGGTGTCCGTGTTGTGATGAGTAAA
GATAATGGATTAAAACTATCACCGACCCTTGGACCACAGCTGACTGATGGGACTGGAAGT
GTAAAGTTTAGTAAATTCACTGTAATGGCAAAGAAAGGTGAATATGCTCTACAACCTAGA
GCTGTTTTCAATCACAATGCAATTGAAGGACCAAAACTAAAAGTGAATGTGTTACCTAAT
ACCGAAACGCCAGTTACACTTAAAGTACAATATGACAAATCAATTGATACTGTAACTGTT
GGAACTTCGTGGCCAGAGTTTAAAGTCAAAGTCTTAACTGAAGAAGGGGAATATGTGACT
TCAGAAGTTTATGTGCAGATGGGAATTTGGAAATCTTCGGGTAAGAAAAATGAAAAATCC
ATCCCAAGTAACGCTGAGCTGCATAAATTTCATCTTTCTGAACCCGACATTGCAGTCTTT
CATGAAATCTCTATTCCCAAAATCCCAGGCTCCTACTGCATTGCTTTTCGAATCACTGAC
ACTGCCAATTCGCACAGTGCTATATTATCAAGTCCTGTGTATAAGTACAGTGTGATTCCC
GGAGAACCGCAAAAAATTGTGGCCGCTGTGGATCCAGGAATCCCAACCGTTTCAAATGCT
AAGCTAACAGTTAACCGAACAATCATAAGAAGTTTGAAATTAAAATTGTTGGATGAATTT
GGTAATCAATGCTCACATTTATACGGTGGAAATATCAAGATCACAATAGAAGTTGCTCAA
GAAACCCTGAAATCGAACGCCATTCCTCATTTTGAAGGAAAGTGTAAGTCACTGACAATT
CCAATGAAGAGCAGTGTAGCAATTCTGCAAAATATTTGCTTAAAGGAAAACTGTCCAGGG
ATTGATGCCAGTGAATACATTTTGAAATGTGATGTGAATTGCCTAGCTCTTAATGAACCT
TTGGAACCATATTGCTTACGATTCATGTTCTACAACGATGTAAACAAGCAGCAGCGCATG
GCTGCTTTGTCGAAACAAAGTGAAGCATTGAAAAAGGATATTGAATCATATGAAAGTTTA
TTTAAGTTGCATGACACTCTTCTGCAAGAAATGAAGAAGTCAGAGAGAGAATTGAAAGCA
GAAAAAACAAAAATATTGTCTGATTTAAGAACGAGTGGAATGATATTATCTGATAATATA
TCTAATATCTCCATTAACGACAGAATTAACATCATAAAACAACAGCAAAAAAACTTTTCT
AAAGAAACCAGAAGAACTTGTCGGTTGCAAGAATATCCTGGCAAAGGTGCTGATATAATA
GGAAAGGTAGGCCATTTGGCACTGATAGAAGATGATGATATTGCAAAAGTACTTTCTTGG
CATTTAATGGGCGATTTTGACTGCTTGATAACACTTACCACAAGCAAAGCTAGAGAAGTG
TACAACTGTACAGGTGGTATGCAACAAGTTTTGCCATTTGACAGCATTTATAAGAAGAAT
TTGGACGACAACAGACCCCTGCCACACAAAAGAACCCCAAATAAATCCTTCAACCCCACA
GGCAACCCCATTTATGCCAGAAACACACTGATTTTTCCAAAGCATGAAGAGACTTGCAAA
GTCGTCTTTGGAATGCTTATTGGCGATACTATTATTATGGATTCGTTAGCATCTGCTAAC
CAATACAGGAAGGAAGTCGTCAAGTATACTTACTGCCCAACGATTTTAAGTCGCAGTGGT
GAGCGTATTAGAAGCAATGGTAAGTTTGGCGGTAGCCAAAACAAAATCGCGTCAATTGAA
AAGTTAAAGGGATGCGTTTTCGGTGCGCCGCTGGGCAAAAAGCATCAGAATTTCGTCAAC
CAACAACGCAATCTGGAAAGACTAAAAGTCATAACAGAGGAAATGAGTGGGACTGAAGTT
GAGTTGGAAATACAGGAAAAGTCGATGGATACCGAGGAAATGCGCACCAAACGAAAGGAA
CACGAAGATGCTGTGAGAAAACTAAAAGAACTGGAGAAAAAACTTGGAGTGACGCCAGCT
ACTGAGGAAAGCTCCACTTCAAATAAAAAACATCGCTTTGCTGACTCTTCAAAATCTGCT
GGTCCTAAAAAGAAGCGATCTCGTTACAAATAG
| Gene3D |
HATPase_C_sf (IPR036890) - T[96-319] 4.4E-14 |
| SUPERFAMILY |
HATPase_C_sf (IPR036890) - T[97-181] 1.24E-9 - T[215-267] 1.24E-9 |
| CDD |
HATPase_C (IPR003594) - T[129-205] 1.02083E-4 |
| SUPERFAMILY |
SMC_hinge_sf (IPR036277) - T[1704-1898] 8.63E-13 |
| SMART |
SMC_hinge (IPR010935) - T[1737-1863] 0.0087 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SMHD1_HUMAN | 39.064 % | 1390 | 0 |