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  1. Transcript 'Moocul.CG.ELv1_2.S40...'

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S40746.g02064.01.t

Possible name(s)

LRP2; RXFP1; SORL1

Location

S40746 [756 / 15,944]

Sequences

Amino acid sequence

Length: 1,032

>Moocul.CG.ELv1_2.S40746.g02064.01.p
MYGYLNSICKGSSPNKVFICANGQNITVDQFCDGFDDCVDGSDEYDVVTTKPSTYYGTVE
CNNIRTPISKTCNLNSSYNSKTCIARRTICDQSSCSGCPEDHEWPNGVGFKCRKQGRVCV
LPQQLTWDDVTDCDGGVDRCFDVRDKTKVQFLSPLMLPLKSIPRDLRFDNSAKFNKTRCF
KCFDGKTIIQRTGICDGIIDCPDLSDEHSSCAGTKSCADSTYEDKQCRCGWYYKTCKKQM
GIACNNIEDCAPYTDFGRVSWVDEGFADDECVANCSLNPNHNYTCGSSGIRGIGAPTAAF
SCVKMGDFTITQLFDPITNFTFVIPARQTVFPYKNACDGKLDCNDGSDESNITCGHKRFF
CSSGEFVNIALNLVCDGVKDCDSGEDETLERCGEKRFFCSALGGKLVSINKSSVCDMYIN
CDDGRDEANCSHLNDRFYCENGKPMFVSITKIKNSKDDCSDYTDECPTKGQFTTGSIFSS
NRELIASAALRVLVWIMALLSLCGNTVVVIFEIKIIKNDALSASLLANHILVANLAVADL
LMGIYLLSLAIKSLQMSGAYCVQDLIWRSSSTCVAFGIISTLASEASIFFLVLLTACRVY
AVYKVWAGDNISTCVARRTICDQSSCSGCPEDHEWPNGVGFQCRKQGRVDLRFDNSAKFN
KTRCFKCFDGKTIIQRSKICDGIIDCPDLSDECVCQRNIIDGRGDCTDCTDECPTQGQFE
TDTIFSSNRELIANGALRVLVWIMALLSLCGNMPHLAFTNPKKMVIAVMAFFAWLFAFIL
ALVPISSQLQTIFVEKAVYPNNPFDMSRGSTIQESRKSLKKLFTISGANFTDLEDISWDE
IENIGKTFSGHPDYFEGIQYFGFYGQSVCIQKFFVTTFNPAWGYSFFINLLNFLLFIFVV
VSYAAVYYRATGGQIQQSKSVREKRDEKMIRIQRKIIRLILTDFCCWVPITIMAFVKLAT
GYLSDEAYAFAAIILLPINSALNPILYSDLLDRIYDNLERRLYKIHANSLSTIAQTTTAV
NPSPSNTHSTQI

Nucleotide sequence

Length: 3,197

>Moocul.CG.ELv1_2.S40746.g02064.01.t
ATGTATGGATATCTAAATTCGATTTGCAAAGGCAGCTCTCCAAACAAAGTTTTCATATGC
GCAAACGGCCAAAACATCACCGTCGATCAATTTTGTGATGGATTTGACGATTGCGTTGAT
GGAAGTGACGAATATGACGTAGTTACAACGAAACCATCAACATATTATGGGACTGTAGAA
TGCAACAACATCCGAACGCCAATCAGCAAGACGTGCAACCTTAACAGTTCTTATAATTCT
AAGACATGCATTGCACGAAGGACAATTTGTGATCAATCAAGTTGTTCCGGTTGTCCAGAA
GATCATGAATGGCCGAATGGTGTTGGGTTCAAATGTAGGAAGCAGGGACGAGTGTGTGTT
CTTCCACAGCAGTTAACTTGGGATGATGTAACTGATTGTGATGGGGGTGTAGATCGTTGC
TTTGATGTTCGCGACAAAACCAAAGTGCAATTCCTTTCACCATTAATGTTGCCTCTAAAA
TCCATTCCAAGGGATTTGCGTTTTGACAATTCCGCAAAATTTAACAAAACCCGATGTTTC
AAATGCTTCGACGGGAAAACCATAATTCAACGTACCGGGATTTGCGACGGGATAATCGAT
TGTCCAGATTTGTCGGATGAGCATTCATCTTGTGCTGGGACCAAGTCATGTGCCGATTCT
ACGTATGAAGACAAGCAATGCAGATGTGGATGGTATTACAAAACCTGTAAAAAGCAAATG
GGTATCGCTTGCAATAACATTGAGGACTGTGCGCCGTACACAGACTTCGGACGTGTAAGT
TGGGTAGATGAAGGTTTTGCGGATGACGAATGCGTTGCGAACTGCAGCCTAAATCCAAAC
CATAACTACACGTGTGGAAGTAGCGGCATTCGAGGGATAGGAGCACCAACCGCAGCGTTT
TCATGCGTTAAAATGGGGGACTTCACGATAACTCAATTATTTGATCCTATAACCAACTTT
ACTTTTGTCATACCTGCGCGCCAAACAGTATTTCCATACAAAAACGCATGTGATGGAAAA
CTTGATTGCAATGATGGTAGCGATGAGTCTAATATAACATGCGGACACAAGAGGTTCTTC
TGTAGTTCTGGAGAATTTGTAAATATCGCGTTAAATTTGGTTTGCGACGGAGTTAAAGAT
TGTGATTCTGGTGAAGATGAAACACTTGAAAGATGTGGAGAAAAAAGATTTTTCTGCAGT
GCTTTGGGGGGGAAATTGGTGAGCATCAACAAAAGCAGTGTTTGTGACATGTACATCAAC
TGTGATGATGGAAGGGACGAGGCGAATTGTTCCCACCTCAACGATCGCTTTTACTGCGAG
AATGGAAAACCAATGTTCGTATCCATTACGAAAATAAAAAATAGTAAAGACGATTGCAGT
GATTATACGGACGAATGTCCCACCAAAGGACAGTTTACAACGGGCAGTATTTTCTCGTCC
AATAGAGAGCTGATCGCAAGCGCCGCTCTACGAGTGTTAGTCTGGATAATGGCACTACTT
TCCTTGTGTGGGAACACGGTAGTCGTTATTTTTGAAATCAAAATAATCAAGAATGATGCA
CTCTCCGCGTCACTGTTAGCTAATCATATATTGGTTGCTAATCTGGCAGTAGCAGATTTG
TTAATGGGAATATATTTGTTAAGTTTGGCAATAAAGTCTCTGCAAATGTCGGGCGCGTAC
TGTGTACAAGATTTAATCTGGCGATCAAGTTCAACATGTGTTGCCTTCGGCATCATTTCA
ACACTTGCTTCAGAAGCTTCCATCTTCTTCTTGGTCTTGTTAACTGCGTGTCGGGTGTAT
GCTGTATATAAGGTGTGGGCTGGTGACAACATATCTACATGCGTTGCACGAAGGACAATT
TGTGACCAATCAAGTTGTTCCGGTTGTCCAGAAGATCATGAATGGCCGAATGGTGTTGGG
TTCCAATGTAGGAAGCAGGGACGAGTGGATTTGCGTTTTGACAATTCCGCAAAATTCAAC
AAAACCCGGTGTTTCAAATGCTTCGACGGGAAAACCATAATTCAACGTTCTAAGATTTGC
GACGGGATAATCGATTGTCCAGATTTGTCGGATGAGTGCGTCTGTCAACGAAACATCATA
GATGGAAGGGGCGATTGCACTGATTGTACGGACGAATGTCCTACCCAGGGTCAGTTCGAA
ACGGATACCATTTTCTCGTCCAATAGAGAATTAATCGCAAATGGAGCGCTACGAGTGTTA
GTCTGGATAATGGCACTGCTTTCCCTGTGTGGGAATATGCCTCATTTGGCATTCACAAAT
CCTAAGAAGATGGTGATCGCAGTAATGGCATTCTTCGCATGGTTATTTGCATTCATTTTG
GCTTTGGTTCCAATCAGTTCTCAACTGCAAACCATTTTCGTGGAAAAGGCTGTTTACCCA
AACAATCCATTTGATATGTCGAGAGGAAGCACAATTCAAGAGTCAAGAAAATCGCTAAAG
AAACTTTTTACCATTTCAGGAGCAAACTTCACAGACTTAGAAGACATTAGTTGGGATGAG
ATTGAAAATATTGGCAAAACATTTTCTGGACATCCTGATTATTTTGAAGGCATTCAGTAC
TTTGGATTTTACGGTCAAAGTGTCTGCATACAAAAGTTCTTTGTAACGACTTTCAATCCT
GCCTGGGGATATTCCTTCTTCATCAATCTTTTAAACTTCTTGCTCTTCATCTTTGTGGTC
GTGTCATATGCGGCTGTGTACTATCGAGCAACTGGTGGACAAATACAACAATCAAAATCC
GTACGTGAGAAACGAGACGAGAAAATGATTAGAATTCAACGAAAAATCATACGTCTGATA
CTGACTGACTTTTGCTGTTGGGTGCCGATAACGATTATGGCTTTTGTGAAACTTGCAACA
GGATATTTGTCAGACGAAGCTTACGCGTTTGCAGCCATCATTCTCCTGCCAATAAACAGT
GCACTCAACCCAATACTCTACTCGGATCTACTTGATAGGATTTATGACAACTTGGAACGA
AGATTATATAAAATTCACGCGAACAGTTTGTCAACTATTGCACAAACTACAACTGCAGTA
AATCCTTCACCTTCAAACACACATTCAACGCAGATCTGATGACCAAAGCTCACTCAATTA
TTATTTTATCGAATGTAAATTGTAACGCACAGAAATGCTATTTTGATTTGATGTTCTCAT
GAACCACTATATCTGGA

InterProScan

ProSiteProfiles
LDrepeatLR_classA_rpt (IPR002172) - T[8-62] 9.15 - T[353-393] 9.75 - T[391-431] 9.425 - T[665-696] 8.512
SMART
LDrepeatLR_classA_rpt (IPR002172) - T[11-49] 0.0069 - T[175-213] 0.025 - T[353-389] 0.027 - T[391-432] 0.0045 - T[660-697] 0.033
SUPERFAMILY
LDL_receptor-like_sf (IPR036055) - T[15-48] 2.49E-8 - T[179-209] 2.75E-5 - T[353-388] 1.02E-6 - T[391-431] 4.06E-5 - T[664-695] 3.53E-5
CDD
LDrepeatLR_classA_rpt (IPR002172) - T[18-44] 4.06347E-6 - T[354-387] 0.00946424 - T[665-695] 0.00108174
PRINTS
LDrepeatLR_classA_rpt (IPR002172) - T[23-44] 6.1E-18 - T[186-207] 6.1E-18 - T[328-349] 6.1E-18 - T[366-387] 6.1E-18 - T[406-427] 6.1E-18
PANTHER
TSHR/LHCGR/FSHR (IPR034298) - T[30-80] 8.8E-84 - T[194-227] 8.8E-84 - T[337-617] 8.8E-84 - T[679-699] 8.8E-84 - T[700-753] 8.8E-84 - T[765-1017] 8.8E-84
Pfam
LDrepeatLR_classA_rpt (IPR002172) - T[353-392] 3.4E-6
ProSiteProfiles
GPCR_Rhodpsn_7TM (IPR017452) - T[504-987] 13.11
Pfam
GPCR_Rhodpsn (IPR000276) - T[882-987] 9.8E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value