- Transcript 'Moocul.CG.ELv1_2.S51...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S51260.g02926.01.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
S51260 [1,051 / 10,062]
Amino acid sequence
Length: 941
>Moocul.CG.ELv1_2.S51260.g02926.01.p
MPLRLDIKRKLNARSDRVKCVDLHPTEDWLLVSLYNGNVHIWNTESQTLVKSFEVCDLPV
RAARFVPRKNWVVTGSDDMQIRVFNYNTLERVHLFEAHTDYIRSIAVHPTQPYLLTSSDD
MMIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSTTPNFT
LEGHLKGVNCVDYFSGGDKPYLISGADDHLVKIWDYQNKTCVQTLDGHAQNVVCVSFHPE
LPIIMTGSEDGTVKIWHANTYRLETTLNYGMERVWCVAALKGSNNIAFGYDEGSIMIKLG
REEPAISMDSNGKIIWAKHSEIQQANLKALGDYEIIDGERLQLAVKDMGSCEVYPQNITH
NSNGRFVVVCGDGEYIIYTAMALRNKAFGSALEFIWATDSNEYAVRESGTTIKLFKNFKE
RSTFKPDFGCDNIYGGSLMGVRTSQGLAFYDWEKLELIRRIEIAPKNIFWSDNGDLLCIA
GEDSFFILKFDQEKVAEAEDNKDLVSEDGIEGTFNVLGEIEEVVKTGIWVGDCFIYTNSV
NRLNYYVGGEIVTIAHLDRTLYLLGYIPKDNRLYLGDKELNVVSYSLLLSVLEYQTAVMR
KDFETADKVLPSVPKEHRTRVAHFLEKQGFKVQAMAVTVDPEHKFELALGLGDLKVAYDL
AKEAQAEQKWKQLAELATSKCEFTLAQECLHNAQDFGGLLLLATSAGNDKMVKTLASDAA
ESGKNNVAFMSYFITGQLEKCLELLVSTKRLPEAAFFARTYMPSQISRVVGLWKADLATT
NKKASDSLANPDQYENLFPGLAESKVAESFLEATEVRRPANHYPQTPSNDERNILEEAEG
FKSRDESEPVDEPEVVPEEAVLLEPEEEEKCEQKPDETPQETISEQELTTQEGADLEQKV
SSAVLVSMEDFHDLELDIENLEIDENIDTSDINLDDDFLDD
Nucleotide sequence
Length: 3,121
>Moocul.CG.ELv1_2.S51260.g02926.01.t
TTTGGACACGGCATAAGTTCCAACTCAGCAGGTTGAGAATTTTGCTGAAAAATAAGAATT
AACGGCAAGGAAATTTGTTTAAAAAGACAAAATGCCACTTCGTTTGGATATTAAAAGGAA
GCTTAATGCTCGATCAGATCGTGTAAAATGTGTCGATTTGCACCCAACAGAAGACTGGCT
TCTTGTGTCTTTATACAATGGAAACGTACATATTTGGAACACGGAATCTCAGACACTTGT
AAAATCGTTTGAAGTTTGTGACCTTCCCGTGAGAGCAGCAAGATTTGTACCTCGAAAGAA
CTGGGTTGTCACCGGATCGGATGACATGCAAATTCGTGTTTTTAACTACAACACATTGGA
GCGTGTTCATTTGTTTGAAGCCCACACAGATTACATTCGATCAATTGCTGTTCACCCGAC
ACAACCTTACCTTCTCACAAGCAGTGATGACATGATGATCAAGCTGTGGGACTGGGACAA
GAAATGGTCCTGCTCTCAAGTGTTTGAAGGACATACTCATTATGTCATGCAGATAGTTAT
CAATCCAAAAGATAACAATCAATTTGCAAGCGCATCTCTTGATAGAACGATAAAAGTTTG
GCAGCTTGGTTCAACGACTCCAAACTTCACGTTGGAAGGCCATTTAAAAGGGGTGAATTG
TGTCGATTATTTTTCTGGAGGGGACAAACCTTACCTTATCTCTGGAGCTGATGATCACCT
CGTGAAGATTTGGGATTACCAAAACAAAACTTGCGTCCAGACACTTGATGGACATGCACA
GAATGTTGTGTGTGTCTCATTTCATCCTGAACTTCCAATCATAATGACCGGATCAGAGGA
TGGAACTGTAAAAATTTGGCATGCGAACACTTACCGGTTGGAAACAACGTTAAATTATGG
AATGGAAAGAGTGTGGTGTGTAGCGGCACTGAAAGGTTCAAACAACATCGCATTTGGTTA
CGATGAAGGAAGTATAATGATCAAACTCGGTCGTGAAGAACCAGCGATTTCCATGGATTC
AAACGGAAAAATTATTTGGGCAAAACATTCTGAAATTCAACAAGCAAACCTGAAAGCACT
TGGAGACTATGAAATAATAGATGGCGAACGATTGCAGCTTGCAGTGAAAGATATGGGAAG
TTGTGAAGTCTACCCACAAAATATCACACACAATTCAAATGGAAGATTTGTTGTGGTTTG
TGGTGATGGGGAATATATCATATACACAGCCATGGCGCTTCGAAACAAAGCTTTTGGCTC
TGCACTGGAATTTATCTGGGCCACAGATTCCAATGAATATGCTGTGAGGGAAAGCGGCAC
AACAATAAAACTGTTTAAAAACTTCAAAGAACGTTCCACATTTAAACCAGACTTTGGTTG
TGATAACATCTACGGAGGTTCTCTGATGGGTGTCAGAACATCACAAGGACTCGCTTTCTA
TGACTGGGAAAAATTAGAACTTATTAGAAGAATTGAAATTGCACCTAAAAATATTTTCTG
GTCCGACAACGGTGATCTTCTCTGTATCGCCGGGGAAGATTCGTTCTTCATCCTGAAATT
TGATCAGGAGAAAGTTGCGGAAGCGGAGGACAACAAAGATTTGGTATCAGAAGATGGAAT
TGAAGGCACATTTAATGTATTAGGGGAAATTGAAGAAGTGGTCAAAACTGGCATTTGGGT
TGGTGACTGTTTTATTTACACCAATTCGGTCAATCGTTTGAATTATTATGTTGGAGGGGA
AATTGTGACCATTGCTCATCTGGACAGAACACTGTATTTACTTGGATACATTCCTAAAGA
CAACCGACTTTACCTTGGAGACAAAGAGCTCAATGTGGTGAGCTACTCTCTGCTGCTCTC
GGTGCTTGAATATCAAACTGCAGTCATGCGAAAAGATTTTGAAACTGCTGATAAAGTCCT
TCCATCCGTCCCGAAAGAACACAGAACACGGGTTGCGCATTTCCTTGAGAAGCAAGGTTT
TAAAGTACAAGCGATGGCAGTCACCGTTGACCCGGAACATAAATTCGAACTTGCTCTCGG
CCTCGGTGATTTGAAGGTTGCTTACGACCTTGCTAAAGAAGCTCAGGCTGAGCAGAAATG
GAAGCAACTCGCTGAACTTGCTACTTCGAAATGTGAGTTTACGTTGGCGCAAGAATGTCT
TCACAATGCACAAGACTTTGGTGGTCTGTTGCTATTGGCAACGAGTGCTGGTAACGATAA
AATGGTGAAGACGTTGGCGTCAGATGCCGCAGAATCGGGGAAAAACAATGTTGCATTCAT
GTCATACTTCATTACCGGGCAACTTGAAAAATGTCTTGAACTTCTTGTCAGCACCAAGAG
ACTACCTGAAGCAGCTTTCTTTGCTAGAACTTATATGCCCAGCCAAATATCACGAGTTGT
TGGCTTGTGGAAAGCTGACTTGGCAACGACGAATAAGAAAGCTTCCGACTCCCTTGCAAA
TCCGGACCAATATGAAAATTTATTCCCCGGGCTCGCTGAGTCCAAAGTTGCTGAAAGCTT
TCTTGAAGCTACTGAAGTGCGACGACCAGCCAACCATTACCCGCAGACACCTAGTAACGA
TGAACGAAATATTCTGGAAGAAGCTGAAGGCTTTAAAAGCCGAGATGAATCTGAACCAGT
TGATGAACCTGAAGTAGTACCCGAAGAAGCTGTCCTCTTGGAACCAGAGGAAGAGGAAAA
ATGTGAACAGAAACCCGATGAAACTCCACAGGAAACGATATCGGAACAAGAATTAACTAC
ACAGGAAGGAGCTGACTTGGAACAAAAGGTTTCTTCAGCCGTGCTTGTCTCCATGGAGGA
TTTTCACGATCTTGAGCTGGACATAGAAAACCTTGAAATTGATGAAAATATAGATACTTC
TGATATCAATTTGGATGACGACTTTCTAGATGATTGATTGCCAAGTTTGCTTGCAAAGCG
AAAATGCTACAAAGTTTCTTATTTATTGTGGGCACTTTTATTTGCTTTGTAGTGTGATAT
ATTCTTGTTCCCGTGCATTTTGTAAGATTTAACTCTATCAAAAATATATAATATCGTCCT
AATCATAAAAATTGTGTTATTATTCTCATTGGTTACGCACAATGGCACCGGAAACATTCT
G
| PIRSF |
COPB2 (IPR016453) - T[2-892] 0.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[3-297] 9.16E-83 |
| SMART |
WD40_repeat (IPR001680) - T[4-43] 0.026 - T[46-85] 0.0022 - T[88-127] 4.7E-9 - T[131-171] 2.5E-8 - T[174-215] 3.7E-7 - T[218-257] 3.7E-10 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[11-300] 2.3E-110 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[11-266] 52.044 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[11-52] 9.773 - T[95-127] 13.85 - T[138-180] 12.146 - T[181-224] 12.246 - T[225-266] 16.022 |
| Pfam |
WD40_repeat (IPR001680) - T[16-43] 0.092 - T[60-85] 0.091 - T[92-127] 1.3E-5 - T[132-170] 0.0033 - T[178-215] 2.0E-6 - T[220-256] 7.3E-9 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[114-128] 7.8E-6 - T[158-172] 7.8E-6 - T[202-216] 7.8E-6 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[319-762] 2.3E-168 |
| SUPERFAMILY |
Quino_amine_DH_bsu (IPR011044) - T[332-585] 4.63E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 26.711 % | 254 | 1.78E-70 |
| COPB2_HUMAN | 71.686 % | 1439 | 0 |
| LIS1_HUMAN | 25.926 % | 112 | 2.62E-26 |