- Region 'REG00000309' >
- Transcript 'Moocul.CG.ELv1_2.S57...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S57799.g03534.01.t
Possible name(s)
COL12A1; COL21A1; MATN2
Gene model
Location
S57799 [15,754 / 18,461]
Amino acid sequence
Length: 456
>Moocul.CG.ELv1_2.S57799.g03534.01.p
SCGGDKLDLVFVIDGSASINKQDFKNFKLWLRNFASSFSLGSSKTQIGAVQYSKTTRTEF
NLTDYDNLSELREAINDIVYMKGSTNTGAGQQIRIVFELMSKSMYFAAINFTHNIMFTEA
RGMRPDAKHVAVVVTDGKSQDDVAIPAAAAKQDGIIIFAIGIGREMIAELKVISSDPDSN
FVYVVNNYTALDSIKKQLQERITRLEKKGHTYTTEHCQAGFSAAFSQDDAIIGLPGYDDW
IGGLAIYNKTDQKFNNQISGLRDLMTSKLKPDVDENEQDEAIVRGTVKVQVKQRLRRRKY
TRTVIRRMPVIKQHKRTQWTMQTNTRQKRSFPAVLQDDQDVFSRLENLIRNKNPKLQEAI
LYREMSYSYFGYSISSSKLEGITKIAIGAPKFKSFGCVFIATESETGFELQKVYKGSQLG
SYFGSSIQLLDVNNDGVNDLIVGAPLWTGKFTDVGQ
Nucleotide sequence
Length: 1,368
>Moocul.CG.ELv1_2.S57799.g03534.01.t
AGCTGCGGTGGGGACAAACTCGACCTGGTATTTGTAATCGACGGAAGTGCGAGCATAAAC
AAACAAGATTTCAAAAACTTTAAACTGTGGCTAAGAAATTTTGCGAGTTCATTTTCGTTG
GGCAGTTCAAAAACACAAATAGGGGCTGTCCAATATAGCAAAACTACAAGAACAGAATTC
AACTTGACGGATTACGACAACTTGTCCGAATTGCGAGAAGCTATCAACGACATTGTTTAC
ATGAAAGGTTCTACGAATACAGGCGCAGGTCAGCAGATACGAATTGTATTTGAATTGATG
AGCAAAAGCATGTATTTTGCAGCCATCAACTTCACACACAACATCATGTTTACTGAAGCA
AGAGGAATGCGGCCTGATGCAAAACATGTTGCAGTTGTGGTTACAGACGGGAAATCACAA
GATGATGTCGCGATACCCGCAGCCGCAGCAAAACAAGACGGCATCATAATATTTGCGATT
GGTATCGGCCGAGAAATGATAGCAGAATTAAAAGTTATTTCATCTGACCCGGACAGCAAC
TTTGTCTACGTGGTCAACAATTATACAGCGTTGGACAGCATCAAAAAACAATTGCAAGAA
CGCATTACAAGACTCGAAAAGAAAGGGCACACATACACAACGGAACATTGCCAAGCTGGG
TTTTCGGCTGCATTTTCACAGGATGATGCAATAATTGGCCTTCCTGGTTATGACGATTGG
ATCGGTGGTCTTGCAATATACAACAAAACCGATCAAAAGTTTAACAATCAAATATCTGGG
CTGAGAGATTTAATGACATCAAAATTGAAACCTGACGTGGATGAAAATGAACAGGATGAA
GCAATTGTGAGAGGAACAGTAAAAGTTCAAGTGAAACAAAGATTACGACGAAGAAAGTAT
ACAAGGACTGTGATAAGAAGAATGCCAGTGATTAAACAACACAAACGAACACAGTGGACA
ATGCAAACAAACACTCGACAGAAGAGAAGTTTCCCTGCTGTCCTCCAAGATGACCAGGAT
GTATTTTCTCGACTTGAAAATTTAATCAGAAACAAAAATCCCAAGTTACAAGAGGCTATT
CTGTACAGAGAAATGTCATACTCTTATTTTGGATATTCCATAAGTTCATCGAAACTTGAA
GGAATCACAAAAATTGCGATTGGTGCACCAAAATTTAAAAGTTTTGGATGTGTGTTTATT
GCTACAGAATCTGAAACCGGTTTTGAATTGCAAAAGGTGTATAAGGGCAGCCAACTTGGA
AGCTATTTCGGATCTTCAATTCAATTGTTGGATGTAAACAACGACGGTGTAAACGATTTG
ATCGTTGGGGCGCCGTTGTGGACGGGCAAGTTCACTGACGTTGGACAA
| Gene3D |
vWFA_dom_sf (IPR036465) - T[4-207] 1.3E-52 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[5-204] 1.41E-48 |
| SMART |
VWF_A (IPR002035) - T[6-203] 2.0E-40 |
| Pfam |
VWF_A (IPR002035) - T[8-196] 5.6E-39 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[8-198] 28.515 |
| ProSiteProfiles |
Int_alpha_beta-p (IPR013519) - T[204-256] 8.031 - T[355-408] 7.811 - T[409-456] 11.876 |
| Gene3D |
Integrin_alpha_N (IPR028994) - T[334-456] 1.9E-23 |
| SMART |
Int_alpha_beta-p (IPR013519) - T[366-417] 0.1 - T[419-454] 1.0 |
| PRINTS |
Integrin_alpha (IPR000413) - T[367-379] 1.3E-10 - T[384-395] 1.3E-10 - T[416-436] 1.3E-10 |
| Pfam |
FG-GAP (IPR013517) - T[423-445] 7.5E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COCA1_HUMAN | 37.949 % | 126 | 6.21E-31 |
| COLA1_HUMAN | 35.784 % | 123 | 5.34E-30 |
| MATN2_HUMAN | 31.667 % | 122 | 8.94E-30 |