- Transcript 'Haaura.CG.MTP2014.S5...' >
- Transcript 'Moocul.CG.ELv1_2.S62...' >
- Transcript 'Haaura.CG.MTP2014.S5...' >
- Transcript 'Moocul.CG.ELv1_2.S77...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S77608.g05598.01.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
S77608 [45,823 / 56,536]
Amino acid sequence
Length: 1,224
>Moocul.CG.ELv1_2.S77608.g05598.01.p
MLTKFETKSARVKGLSFHPKRPWVLSSLHNGCIQLWDYRMCTLIDKYEEHDGPVRGICFH
NQQPLFVSGGDDYKIKVWNYKLKRCLFTLLGHLDYIRTTVFHHEYPWILSASDDQTIRVW
NWQSRNCVAVLTGHNHYVMSAQFHPSEDIVVSASLDQSIRVWDIAGLRKKNLSPGSSSDE
GRGPGGPTSIELFGTTDVVVKHVLEGHDRGVNWACFHPTMPLIVSAADDRLVKLWRMNES
KAWEVDSCRGHYNNVSCCVFHPKSDLILSVSEDKSIRVWDMSKRTGVQSFRRDHDRFWIL
ASHPNLNLFAAGHDNGMVIFKLERERPAFATHGNSLYYVKEKYLRRLDFASSKDVAVMQL
RGSGSKASVYSMSYNPAENAVVVTSRASNIENSTYDLYQIPKTIDSSNPDAVEGKRSSGL
TAVWVARNRFAVLDRTHTIIIKNLKNDVAKKINIPAVDEIFYAGSGSLLLRTPDGISLYD
VQQKRSLATVKIAKVKYVIWSDDMSHVALLSKHNISICNRKLESVASIHENVRVKSGAWD
EQGVFIYTTSNHIKYALHNGDHGIIRTLEVPIYITRVKGTSVYCLDREVKPRVLGIDPSE
YRFKLALINRKYDEVLNIVRSSKLVGQSIISYLQQKGYPEVALHFVKDEKTKFSLAVECG
DIEVALAAAKALDDKPCWEALGEVALAQGNHQVVEMAYQRTKNFDKLAFLYLLTGNLEKL
KKMMKIAEIRKDTSGHYQAALYLGDVTERVKILKGCGQTSLAYLTASTHGLKEEATELQE
ELGDGKLPDVADDATLLQPPPPISQTEENWPLLTVSKGYFDGAMGSGGKVAMAADVDDED
AGGWGEDVDIMIDEEGGIVEGMDDDDMDMNMDDEEGGGWDVDDDDLELPADLDIGDLQVG
DGGEGYFVPPTKGTSQGQVWCNNSQLPVDHILAGSFETAFRLLHDQVGVTDFEQYKQLFM
RTYARGRSAFTAIPAVPCLYGFPHRNYREAGARSGVPAIGVKLSDLANWLQVAYKLTTQG
KFEDAIDKFRYILLSVPMLVVDNKSEISEAQQLISICREYIVGLSMEQDRKQLPKATRED
QIRSAEMAAYLTHCQWQPVHLTLALRTAQNLFFKMKNYKSAADFARRLLELGPKPAVAQQ
TRKIIAACDKNPRDTVEVKYDAHNPFDICAASYLPIYRGKPVEKCPLSGTCYLPKFKGET
CRVTQCTEIGKDCIGLRISSIQFR
Nucleotide sequence
Length: 3,937
>Moocul.CG.ELv1_2.S77608.g05598.01.t
GTGTGACTGGCGCCTCATAATATTTTTTTTTAGCTACGTTTACAAAACTTGGAAGTTTCA
GTCAAACTTTGGCCTGCTGTTTTATTTAGTTCACAGGATTTGAAGTTTCCTGATTGTCTT
CAATATGTTAACGAAATTCGAAACGAAATCAGCAAGAGTCAAAGGTCTTTCTTTTCATCC
AAAACGTCCATGGGTTCTCTCGTCTCTTCATAATGGCTGCATTCAACTTTGGGATTATCG
AATGTGCACGTTGATCGATAAATATGAAGAGCACGATGGTCCTGTAAGAGGAATTTGCTT
TCACAATCAACAGCCGCTGTTTGTGTCTGGAGGAGATGATTATAAAATAAAGGTTTGGAA
TTACAAATTGAAACGTTGTTTGTTCACATTACTTGGACATCTCGATTACATACGAACGAC
AGTTTTTCACCATGAATATCCTTGGATTCTCAGTGCTTCTGATGATCAGACCATTCGCGT
CTGGAACTGGCAATCTCGAAATTGCGTGGCTGTTCTTACAGGCCATAATCATTATGTTAT
GTCAGCTCAATTTCATCCTTCTGAAGATATCGTTGTGTCTGCGTCGTTAGATCAATCCAT
TCGTGTTTGGGATATCGCTGGCCTACGTAAGAAAAATTTGTCACCCGGTTCAAGTTCTGA
TGAAGGGCGAGGCCCCGGAGGGCCAACTTCGATTGAATTGTTTGGAACAACTGATGTTGT
AGTCAAGCATGTTTTGGAGGGTCATGATAGAGGTGTAAACTGGGCGTGTTTCCACCCAAC
TATGCCTTTAATTGTGTCAGCAGCTGATGACCGACTGGTCAAACTTTGGAGAATGAACGA
ATCGAAAGCTTGGGAGGTTGATTCGTGCCGTGGTCACTATAACAATGTGTCCTGCTGCGT
TTTCCATCCGAAGTCGGATCTCATTCTCAGTGTGTCTGAAGATAAATCGATTCGTGTTTG
GGACATGAGCAAGAGAACCGGAGTTCAGTCATTCCGAAGGGATCATGACAGATTTTGGAT
CTTGGCAAGCCATCCCAACTTGAACCTATTTGCTGCCGGACACGACAATGGAATGGTGAT
ATTTAAACTGGAAAGAGAGAGACCAGCGTTTGCCACACATGGAAATTCACTTTATTACGT
GAAGGAAAAATATCTTCGAAGACTCGACTTTGCAAGCAGTAAAGATGTTGCAGTTATGCA
GCTTCGGGGAAGTGGTTCGAAGGCATCTGTGTATTCGATGTCGTACAATCCAGCCGAGAA
TGCTGTCGTCGTGACATCGCGCGCATCAAATATTGAAAATTCAACCTACGATCTTTACCA
GATACCAAAGACCATTGATTCATCAAACCCAGATGCTGTGGAGGGCAAGCGATCATCCGG
TTTGACAGCAGTTTGGGTTGCGAGGAACCGATTCGCAGTTTTGGATCGAACTCACACAAT
CATCATTAAAAACTTAAAGAATGATGTTGCTAAGAAGATCAACATCCCTGCCGTGGATGA
AATATTTTATGCTGGATCAGGATCTCTTCTCCTTCGTACTCCAGACGGCATCAGCCTCTA
TGATGTCCAACAAAAGAGATCGCTTGCAACAGTGAAGATTGCGAAAGTGAAGTATGTTAT
TTGGTCGGATGACATGTCACACGTTGCGTTGCTGTCGAAACATAACATCTCAATCTGCAA
CCGGAAGTTGGAATCTGTTGCGAGCATTCACGAGAACGTGCGCGTGAAGTCTGGCGCGTG
GGATGAACAAGGAGTATTCATCTACACAACTTCAAACCATATCAAATATGCACTGCATAA
CGGCGACCACGGTATCATTCGTACATTGGAAGTCCCGATCTACATCACACGAGTGAAAGG
GACGAGTGTTTATTGTCTCGATCGTGAAGTCAAACCGCGAGTCCTCGGAATCGATCCGTC
GGAATATCGATTCAAACTTGCTCTGATCAATCGCAAATACGATGAAGTTCTGAACATTGT
ACGAAGTTCAAAACTCGTCGGACAATCCATCATTTCGTATCTTCAACAGAAAGGTTATCC
AGAGGTCGCTCTTCATTTTGTCAAGGATGAAAAAACAAAATTCTCTCTCGCTGTAGAATG
CGGGGATATCGAGGTGGCTTTGGCAGCAGCGAAAGCGTTGGATGACAAGCCTTGTTGGGA
AGCTCTCGGAGAAGTTGCTCTTGCTCAAGGAAACCACCAAGTGGTTGAAATGGCGTACCA
ACGAACGAAAAACTTTGACAAACTTGCGTTCTTGTATTTGCTGACCGGAAACTTGGAAAA
ACTCAAGAAGATGATGAAAATCGCTGAAATTCGTAAGGACACATCTGGACATTACCAAGC
TGCATTGTACTTGGGAGATGTCACCGAACGTGTGAAAATCCTCAAAGGATGCGGACAAAC
ATCACTTGCATACCTCACAGCATCAACTCATGGTTTGAAAGAAGAAGCAACTGAACTTCA
AGAAGAGCTTGGTGATGGTAAACTTCCGGATGTTGCAGATGATGCTACTCTTCTCCAGCC
TCCACCCCCGATTTCACAAACGGAAGAAAACTGGCCACTACTGACCGTGAGCAAAGGCTA
CTTCGATGGTGCTATGGGATCTGGTGGTAAGGTTGCCATGGCAGCGGATGTTGATGATGA
AGATGCTGGAGGATGGGGAGAAGATGTTGATATCATGATTGATGAGGAGGGTGGTATCGT
TGAAGGAATGGATGATGATGACATGGACATGAATATGGACGATGAAGAAGGTGGAGGATG
GGATGTAGATGATGATGATCTTGAACTTCCAGCTGATCTTGATATTGGAGATCTACAAGT
CGGCGATGGTGGAGAAGGATATTTTGTACCACCCACAAAAGGAACCTCCCAGGGACAAGT
ATGGTGCAATAATTCTCAACTTCCTGTTGATCATATTCTTGCAGGATCATTTGAGACCGC
ATTTAGATTACTCCACGACCAAGTTGGCGTCACAGATTTCGAACAATACAAACAGTTGTT
CATGCGAACTTATGCCCGAGGACGAAGTGCTTTTACGGCGATTCCGGCAGTTCCGTGTTT
GTACGGATTCCCACATCGGAACTACCGGGAAGCCGGAGCAAGATCTGGAGTTCCTGCAAT
CGGCGTGAAGTTGTCAGATCTTGCCAATTGGTTGCAAGTTGCATACAAACTGACGACGCA
AGGAAAATTCGAAGATGCGATTGACAAATTCCGATATATTTTGTTGTCTGTTCCAATGTT
GGTTGTGGATAATAAAAGCGAAATCAGTGAGGCACAGCAGTTGATTTCCATATGTCGTGA
ATACATTGTTGGTTTAAGCATGGAACAGGATCGGAAGCAATTACCGAAAGCCACGAGAGA
AGATCAAATTCGATCAGCAGAGATGGCTGCATACCTCACACATTGCCAATGGCAGCCAGT
ACATTTAACACTTGCTCTAAGAACCGCACAAAACTTGTTTTTCAAAATGAAAAATTACAA
GTCAGCTGCTGATTTCGCACGACGATTGTTGGAATTAGGACCAAAACCCGCCGTTGCACA
ACAGACCCGAAAAATCATTGCTGCATGCGACAAGAACCCACGTGATACAGTTGAAGTGAA
ATATGATGCTCATAACCCGTTCGATATTTGCGCCGCCTCCTACCTACCAATCTACAGAGG
AAAACCTGTTGAAAAATGCCCGTTGAGTGGCACATGTTATTTGCCGAAATTCAAAGGCGA
AACATGCCGAGTCACCCAATGCACTGAGATCGGAAAAGACTGCATAGGATTGCGAATTAG
TTCAATTCAATTCCGTTAAATGACTTATAAACCGCATGTTGCGTTCCAATACTGTTGCTT
TTAATATGCTTTACCGATGTAATAATGATACCATATTATATAACACATTTCAGATATTAA
TAAACGTCTATAAGAAATGATAATTTGCTATCAATTA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-323] 3.4E-127 |
| PIRSF |
Coatomer_asu (IPR016391) - T[1-1220] 0.0 |
| SMART |
WD40_repeat (IPR001680) - T[2-37] 5.1 - T[40-79] 1.1E-6 - T[82-121] 1.8E-6 - T[124-163] 2.5E-10 - T[197-236] 3.2E-6 - T[241-280] 4.7E-8 - T[283-321] 120.0 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[5-330] 48.327 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[5-168] 3.16E-72 - T[200-319] 3.16E-72 |
| Pfam |
WD40_repeat (IPR001680) - T[12-37] 0.23 - T[44-79] 2.7E-5 - T[84-121] 2.2E-6 - T[126-163] 1.1E-6 - T[202-235] 0.002 - T[245-280] 9.0E-7 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[47-88] 12.346 - T[89-130] 12.313 - T[131-164] 15.354 - T[204-245] 12.012 - T[248-289] 14.385 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[108-122] 2.3E-6 - T[150-164] 2.3E-6 - T[267-281] 2.3E-6 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[150-164] . - T[267-281] . |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[348-770] 2.0E-140 |
| Pfam |
Coatomer_asu_C (IPR010714) - T[817-1224] 8.6E-174 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 74.98 % | 1961 | 0 |
| COPB2_HUMAN | 26.518 % | 268 | 4.63E-75 |
| LIS1_HUMAN | 26.102 % | 112 | 3.62E-26 |