Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S81842.g06063.01.t

Possible name(s)

CIRBP; TRA2A; TRA2B

Gene model

Moocul.CG.ELv1_2.S81842.g06063

Location

S81842 [12,730 / 15,693]

Sequences

Amino acid sequence

Length: 335

>Moocul.CG.ELv1_2.S81842.g06063.01.p
MSDSDLEPGEYKQQAARKNRSLTPPGVDHARSKSRSRSKESVHSRRSGSPRRRSYSRSRS
HSRGSARSRSHSYGKRSRSKDNYRSPKRSSYSRRSRSYDKKRRSYSRSRSRSRGSRSPMS
GRKRHIGDRMNPPSGKCLGVFGLSLYTTESDLQDVFSRYGYIDKCNIVIDQKTGRSRGFG
FVYFEDTNDAVEAKERANGMDLDGRKIRVDFSITKRAHTPTPGMYVGRPAPHHSSGPPRR
YDDRGGGDRYDRYDRYDNRDRRGYDKRGGGGGGGGGRYDDRDRYNSRRSPSPYYSSHRRS
PSPYGRDRKSELHAYIFRTKLSGDTEDVMKLKMDF

Nucleotide sequence

Length: 1,901

>Moocul.CG.ELv1_2.S81842.g06063.01.t
CTGATATACAAGCCGCTTATTTTCTTCGTCTCACATGTTCGTTCGGATTTCGCTGACAGG
TTCTTGTGTGAATGGCGAGTACGGTAGCAGAATAGGATCTTGGCTGGTCGTCAGATTGTG
ATTGACTAAATGTGTAATACCTGTACCAGTTGAGTTTATAAAGTGAAAACTTTGCCTACT
GCAGTGTGTCATGTGTCGTATTTCTTAAGTGTGTGAAGTGATTCACTTGCTGACTAGCCT
AGTCACTCAGTCACTAGCCTACCCCTCTGCCTTTTACGCTCTATATACACACACTTTATC
TAGGTTTATCAATATCAGTCAGTCACCAACTGAGTTTACAGTAAATAAGGTAGGCCTCAC
TGACTAACACTGTTATTTACTCTGGTAGGCAGATACGTTAAGTCAGATAACGTTTGTAAT
TATCTGATTATACGTAGTTAACTGACTGACTGATTAAACAGTTAAACGTAAAAGTATACA
TAATCCTTACAGTACCCTAGCGGTAAAAGATATTAATTAGTAATATACGCCAAAGTTTAT
GAAATTTACAACGAAATTGCTAATTTATCTACGGCAAAAATATAATAAAATAAACAAAGT
ACTGGTATGTGAGTACGTAGCAGAAATTACGCTGGTAGCTGTGCATTTACGTGTGATAAA
TCCCGCATAAGCGGTCTACTTTCCAGTCTGGACGGTACCCTCCCAGCAGCCCTAAATTTA
CTGTTACGTTGGATTGTAGTTCTTCTATTTAAAAACTCAATTTCCATATAAAAATTTATA
TAATGAGTGATTCCGATCTCGAACCGGGTGAATATAAGCAACAAGCAGCACGGAAAAATC
GAAGCTTAACCCCGCCTGGTGTTGATCATGCTCGTTCGAAATCCCGTTCAAGATCGAAGG
AATCTGTGCATTCAAGACGATCTGGTTCTCCGCGCAGAAGATCATATAGTCGATCAAGAT
CACATTCAAGAGGTTCCGCCCGATCACGCTCTCATTCATATGGCAAACGATCTCGATCGA
AGGACAATTACAGAAGCCCAAAGCGGTCAAGTTACAGTCGTCGTTCCAGAAGTTATGATA
AGAAGAGGCGGTCATATTCTCGCAGCCGCTCAAGGTCCCGTGGAAGTCGATCACCGATGT
CAGGCCGAAAACGCCATATTGGAGACAGGATGAATCCACCAAGTGGTAAATGTTTGGGAG
TATTTGGTTTAAGTCTTTACACAACTGAAAGTGATTTACAAGATGTGTTCTCAAGATATG
GCTATATTGATAAATGCAATATTGTTATTGACCAAAAGACTGGCCGATCTCGTGGTTTTG
GTTTTGTCTATTTTGAAGACACAAATGATGCAGTTGAAGCTAAGGAAAGAGCAAATGGAA
TGGATTTAGATGGCCGAAAAATTCGAGTTGACTTTTCAATCACAAAACGAGCACATACAC
CAACTCCGGGAATGTACGTTGGAAGACCAGCTCCACATCACAGTTCCGGCCCGCCCCGAC
GGTACGATGACCGAGGTGGTGGAGATCGCTATGACCGCTACGATCGTTATGACAACAGGG
ATCGTCGTGGGTATGATAAAAGAGGAGGAGGAGGAGGAGGGGGAGGTGGTCGCTATGACG
ACCGGGATAGATACAACAGCCGACGCTCGCCATCACCTTACTATAGCAGTCACCGACGCA
GCCCAAGTCCTTATGGAAGAGATCGTAAGTCAGAACTACATGCCTACATTTTTAGAACGA
AACTTAGTGGCGATACTGAGGACGTGATGAAACTGAAGATGGACTTTTAAACTATGTACA
GTAGATGATACTGCTTTTATTTTATGGACATTGTATAGTTTGTAACTTGTCCATTTTAAT
GCCTGTATACTACCAACCAATAAAAATCTTACGAATTTCAA

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[69-221] 1.6E-30
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[130-246] 6.31E-31
ProSiteProfiles	RRM_dom (IPR000504) - T[136-214] 17.967
SMART	RRM_dom (IPR000504) - T[137-210] 7.1E-22
Pfam	RRM_dom (IPR000504) - T[140-208] 2.9E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRA2B_HUMAN	63.333 %	182	1.51E-55
TRA2A_HUMAN	60.256 %	174	1.05E-52
CIRBP_HUMAN	50.617 %	79.3	1.09E-17