- Clone 'AHC0AAA215YB06' >
- Clone 'cslv061f04' >
- Transcript 'Moocul.CG.ELv1_2.S82...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S82902.g06209.01.t
Possible name(s)
PCDH17; PCDH18; PCDH19
Gene model
Location
S82902 [41,360 / 48,132]
Amino acid sequence
Length: 1,143
>Moocul.CG.ELv1_2.S82902.g06209.01.p
MKPLFLLLIIFCTIKLIASSTIHEKLIFVNEEEDPGTVIARMKDFTKPTINNATIAPKFK
ILSQTVLVDKTTSRQKQLKPSKKWLTIDENSGEITCLRRFDRDIECLASDICLVVVKAVM
LPQEYFSMVKLNVTIVDINDNAPTFRANLPAVNISESTPVGSAFGIEMYRATDSDFGVNG
EITYTLTENNVFELRQYRDLAGDSRIEIILNSKLDFETQKHFTLQLTATDKGKRNKISSV
VDLNIAVLDENDNNPVFTEEEYQVTLKENLPAGYVIKTVRAVDLDAGIYGRVRYFLSDVD
GSSFQDLVEVHEVTGEVSLMQHLDREKHNGMRIPIEARDGDITNRQIGHTWLVIHVMDIN
DNAPIITVNFIVDSKGSKGYLPESSPVGTFVAYVIVSDADDGRNGEVTTTIMTKGLAASG
EFYEDAKNTFKLVKGGLIQTNKDIDRELCSQYRLFISACDEGIDRNCTKANVDINILDVN
EHEPIFETPNKQVTLREDSLVGTILTSVQAYDGDAVNLPSFRKDKDAEIVPSENGNIVYS
IIGDETRYFSIDEITGKIVLERPLDRETKSVWKINVIAKDKGAPHSLEGKSIVEVDVTDV
NDNAPIFTDPAVNNSLIYASTHGGEGGIARVQAIDRDSGENALVRYSIVHSTERFLDIFL
IDSGTGKISFNKVADVNNSNILHHEHEIMIKASDSGSPSLSTYTVVRMYITNEPIERDGV
NQITTPKTESLNLMLLAVGLGSATILIVVVIIIIAIKCRRENEKVRTYRCRDAEAKTSSC
VSCNCHDSSNDIRSETNTTPSSNTADTNSTIANSCNKEVPWNTTNSRHESDSIPPPSAGY
SSTNSNNPFSKSVVSTGTDDGKYRCMQRSGLPTITVLAAMDNPSSPIKNSVGRFFSAQDS
DSGRGESETDVGSYDMFTDPRRKANKRCPLGRDIDDVFQREMEEYHDRGCGTLGPSCNEQ
CLKYGHCDMCWMPSPEKKIPQLACIREVQHPPINTARIMPIKPRHYSENTSYYSSNDVFL
PKGYRKATSIDQISQISSSCSAPERSHSNEQNALLSKDIAYFPNTLQHRTACYSHNSPLI
QDGAVERLYKPSATRNKNTKIIRSADKIFKSERNYEEEKLPLRHQSTSEETNNIIDNNNK
LIV
Nucleotide sequence
Length: 3,869
>Moocul.CG.ELv1_2.S82902.g06209.01.t
AATGGTCAGTGTGATGGTGATTTCTTGTCTGCTTTTAACTCGGGTGGTGATTAATTTGTC
GCATGTCACTTCTACAGTGAACAAACAGATACCGCTATGTCGTGATGGAAGACGAAAGAC
AGAAGATTTTCAGATATCAATGTGTTACTTTGAATATTCCTTGCTTACGTATTCTTCGTC
TTCTTGAAAGTATCGGGAATTAACAGGAACAATTAATTGGAATAAAATTTCACAATCTTC
TCAGCATCAACATATACATCAATATATCGGAAGTGGAACAATACATTTACTCGCAGAAAG
GATGAAGCCTTTGTTTCTTCTTTTAATTATTTTCTGCACCATCAAGTTAATTGCATCATC
AACAATACATGAAAAGTTGATATTTGTCAATGAAGAAGAGGACCCAGGGACGGTTATTGC
CAGAATGAAGGATTTCACTAAACCCACCATCAATAACGCCACAATTGCTCCAAAATTCAA
GATTTTATCTCAAACTGTGTTGGTCGATAAAACCACAAGTAGGCAAAAGCAATTAAAGCC
ATCCAAGAAATGGTTGACGATAGACGAAAACAGCGGCGAAATTACGTGTCTTCGTCGATT
TGATCGCGACATTGAATGTCTTGCTAGCGATATTTGTCTGGTCGTCGTTAAGGCTGTCAT
GTTACCGCAGGAATATTTTTCGATGGTGAAACTTAATGTTACGATTGTGGACATCAACGA
CAATGCTCCCACCTTCAGAGCAAATCTGCCAGCGGTAAACATAAGTGAAAGCACTCCTGT
TGGAAGCGCTTTTGGCATAGAAATGTACCGAGCAACTGACAGCGATTTTGGTGTGAATGG
TGAAATAACTTATACACTTACTGAAAACAATGTGTTCGAATTAAGGCAGTATCGCGATCT
CGCCGGTGACTCCCGTATAGAAATAATTCTAAACAGCAAATTAGATTTTGAAACACAAAA
ACACTTCACACTTCAACTGACGGCGACTGATAAAGGGAAGCGTAATAAGATTTCCAGTGT
TGTTGATCTTAACATTGCTGTGTTGGATGAAAACGACAATAATCCCGTGTTCACTGAGGA
GGAATACCAAGTGACATTGAAAGAAAATCTGCCAGCCGGATACGTCATCAAAACAGTTCG
AGCTGTCGATCTTGATGCGGGTATTTACGGAAGAGTGCGATACTTTCTATCTGACGTAGA
TGGCAGTTCATTTCAAGATCTTGTCGAAGTACATGAAGTTACTGGCGAGGTGTCTCTGAT
GCAACATCTAGACAGAGAAAAACATAATGGCATGAGAATACCCATCGAGGCAAGAGATGG
TGATATAACGAATCGTCAGATTGGACACACTTGGTTGGTCATACATGTCATGGACATTAA
TGACAATGCTCCGATTATCACTGTTAATTTCATTGTCGATTCAAAGGGTAGCAAAGGATA
TTTACCCGAGTCATCACCGGTTGGAACTTTTGTTGCGTATGTAATTGTTTCGGATGCCGA
TGATGGTCGTAATGGTGAAGTGACAACAACCATCATGACAAAGGGCTTGGCAGCATCTGG
GGAATTTTACGAAGATGCCAAAAACACATTTAAACTAGTCAAGGGTGGGTTGATTCAAAC
AAACAAAGACATTGACAGAGAACTTTGCAGTCAATATCGACTTTTCATCTCCGCATGTGA
TGAAGGGATAGACAGAAATTGTACAAAGGCAAATGTCGACATTAATATACTGGATGTTAA
CGAACATGAACCAATATTTGAAACACCTAACAAACAAGTTACTTTGCGGGAGGATAGTCT
GGTGGGAACTATTTTGACGTCAGTACAAGCATATGATGGGGATGCGGTAAACTTGCCAAG
TTTCCGAAAAGATAAAGACGCTGAGATTGTTCCTTCTGAGAACGGAAATATTGTTTACTC
TATAATTGGCGATGAAACCCGATATTTCAGTATTGATGAAATAACAGGAAAAATAGTACT
TGAACGGCCACTGGATCGTGAAACTAAATCAGTTTGGAAAATTAACGTCATCGCAAAAGA
CAAAGGTGCACCACATTCACTAGAAGGCAAAAGCATTGTTGAAGTGGACGTTACAGACGT
AAACGATAATGCTCCAATTTTCACTGATCCGGCCGTTAACAATTCTTTAATATATGCAAG
TACACATGGCGGCGAAGGAGGTATTGCTCGAGTGCAGGCAATCGATAGAGATTCTGGTGA
AAATGCACTGGTACGATATTCCATCGTACATTCAACGGAGCGTTTCCTCGACATTTTCCT
AATTGACTCGGGGACTGGTAAAATTTCTTTCAACAAAGTTGCAGATGTAAACAATTCCAA
CATACTTCACCACGAGCATGAAATCATGATAAAGGCAAGTGATTCCGGCAGTCCAAGTTT
GTCGACTTACACTGTGGTAAGAATGTACATCACCAATGAACCAATTGAAAGAGATGGCGT
TAACCAAATCACAACACCAAAAACTGAAAGTTTAAATTTAATGTTGCTTGCTGTTGGACT
TGGATCAGCAACAATACTGATTGTGGTCGTCATCATCATAATTGCAATAAAATGTCGGCG
GGAAAATGAGAAAGTAAGAACGTACCGGTGTCGAGATGCTGAGGCAAAAACTTCGTCTTG
TGTTTCTTGCAATTGTCATGATTCTAGTAACGATATCCGAAGCGAAACCAATACAACGCC
ATCTTCCAATACTGCGGACACTAACTCTACTATTGCAAATAGCTGCAATAAAGAAGTTCC
GTGGAACACAACCAACAGCAGACACGAATCAGACTCTATCCCGCCACCTTCTGCCGGGTA
TTCCTCAACAAACTCAAACAACCCTTTCTCTAAAAGTGTTGTCAGTACCGGCACAGATGA
TGGCAAATATCGATGTATGCAACGTAGTGGATTACCAACCATCACTGTACTTGCAGCCAT
GGATAATCCATCGTCCCCTATAAAAAACTCGGTTGGACGATTTTTTTCGGCACAAGATAG
CGATAGTGGAAGAGGCGAAAGTGAAACAGACGTGGGGAGTTATGACATGTTTACGGACCC
TAGAAGAAAAGCAAATAAAAGATGCCCACTTGGTCGTGATATTGACGACGTGTTTCAACG
TGAAATGGAGGAATACCACGACAGAGGCTGTGGCACATTGGGTCCGAGTTGCAATGAGCA
GTGCTTAAAATATGGCCACTGTGATATGTGCTGGATGCCCTCTCCTGAAAAAAAAATACC
ACAACTTGCATGTATTCGCGAAGTACAACACCCCCCCATAAATACAGCTCGGATTATGCC
AATAAAGCCCAGACATTATTCTGAAAATACCAGTTATTATTCGTCGAACGATGTGTTCCT
TCCAAAAGGATACAGAAAAGCAACATCTATCGATCAAATTTCTCAGATATCATCTTCCTG
TTCCGCACCAGAAAGATCGCACTCAAACGAACAAAATGCTCTTTTATCAAAGGACATTGC
ATATTTCCCAAACACATTGCAACATCGAACAGCCTGCTACAGTCACAATTCGCCACTGAT
ACAAGATGGCGCCGTTGAACGTTTATATAAACCATCTGCCACCAGAAATAAAAATACGAA
AATAATACGATCTGCAGATAAAATATTTAAATCAGAAAGGAATTACGAAGAAGAAAAACT
ACCTTTAAGACATCAATCAACATCAGAAGAAACGAATAACATTATTGACAACAACAACAA
ATTAATAGTATGAATATTATCCTATTATGTTTATAATGACCGACACTGTGTAGTATGTGA
CATAACTTCATCATATGATTATATTACAACCGTTATTATTTAAACACATTTGTGACACGC
TCTGCTGTCTACAATGTACATACACACAG
| SMART |
Cadherin (IPR002126) - T[38-143] 0.018 - T[169-255] 1.7E-16 - T[279-364] 4.0E-18 - T[394-484] 2.1E-14 - T[526-605] 1.0E-21 - T[631-714] 6.3E-9 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[80-145] 1.06E-5 - T[138-249] 1.57E-18 - T[245-371] 1.4E-25 - T[359-479] 4.14E-15 - T[474-610] 1.43E-21 - T[600-711] 1.28E-15 |
| PRINTS |
Cadherin (IPR002126) - T[83-102] 3.2E-26 - T[257-286] 3.2E-26 - T[451-463] 3.2E-26 - T[465-484] 3.2E-26 - T[484-497] 3.2E-26 - T[554-580] 3.2E-26 - T[589-606] 3.2E-26 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[133-143] . - T[245-255] . - T[354-364] . - T[595-605] . |
| Pfam |
Cadherin (IPR002126) - T[152-247] 3.9E-7 - T[262-356] 2.4E-10 - T[380-477] 1.1E-10 - T[525-598] 7.0E-12 - T[628-710] 1.0E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 30.343 % | 308 | 5.65E-88 |
| PCD17_HUMAN | 30.506 % | 285 | 7.65E-80 |
| PCD19_HUMAN | 29.831 % | 276 | 5.75E-77 |