- Clone 'ciem846k12' >
- Clone 'citb073f05' >
- Clone 'citb100d12' >
- Clone 'cien82855' >
- Transcript 'Moocul.CG.ELv1_2.S94...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S94936.g07839.01.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S94936 [25,407 / 36,640]
Amino acid sequence
Length: 656
>Moocul.CG.ELv1_2.S94936.g07839.01.p
MNSNSGPSYPMASLYVGDLHVDVTEAMLYEKFSQAGPVLSIRVCRDMVTRRSLGYAYVNF
QQPADAERALDTMNFDPIKGQPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTF
SAFGNILSCKVSCDDNGSKGYGFVHFETEEAAQRAIEKVNGMLLNDKKVFVGRFISRGDR
HKQIGERMRNFTNVYIKNFGDKISEELLREHFEKYGSVKSVAVMKDQEGNSRGFGFVAYG
SHEEAEKAVQAMNGQDINGQELYCGRAQKKAERMSELRQRYEKQKMERIQRYQGVNLYVK
NLDDTIGDDGLREAFAPYGTITSAKVSTEVMPDSERSRGFGFVCFSSPEEATKAVTEMNG
RILGTKPLYVALAQRKEDRKQHLAAQYMQRVTNTMGMRIAPPSQMVNQGFQSGAPYFMPI
QQNRGFLQAPLIRATPRWQAATAQGFPMQNQMRANAPRSASNGPAIRPMSQGMARNNMAR
GMDMMQQQRQQQMAMQQPGARNQGFKYTQNVRNPTLPNNGMQTQQVNQAQEAASQPAVHV
LGQEPLTASMLAQAPAQEQKQMLGERLYPLIEASHRELASKITGMLLEIDNSELLHMLES
RESLKAKVEEAVAVLQAHQAKMAATRRQTTGTTGTAAPAASQPAQVPVAVNGGGQE
Nucleotide sequence
Length: 2,189
>Moocul.CG.ELv1_2.S94936.g07839.01.t
GACTAATAAAGTGACGTCATAGTCCCGTGCAAGTCTTTGTGATCGTAGAACCCGATTCAC
TCTTTGGATGTTATCGTGGTGACTTGCGGACATATTGTTTGTCCATTTGTAGTATACAAA
AAAAATCCAAAAAAATCTAAAAAATAGAAAACCCTACGAAAAAAATTATAAAAGAATAAA
AAACTTGATTAGTATTCAACGATCAACGAACGAAAAAAATGAATTCGAACTCTGGTCCCT
CCTACCCAATGGCGTCTTTGTACGTTGGTGATTTGCATGTCGATGTCACGGAAGCTATGC
TCTATGAAAAGTTTTCCCAAGCTGGCCCTGTTCTTTCGATTCGTGTTTGCCGTGATATGG
TAACTCGACGATCTCTTGGCTACGCTTATGTTAACTTTCAGCAACCTGCAGATGCCGAAC
GAGCTTTGGACACAATGAACTTTGACCCAATCAAAGGTCAACCAATTCGTATCATGTGGA
GTCAACGTGATCCAAGCCTCCGTAAATCTGGTGTTGGCAACATCTTCATTAAGAACTTGG
ACAAATCCATCGACAACAAAGCACTTTATGACACATTCTCTGCTTTTGGCAACATTCTGT
CTTGCAAGGTGTCATGTGATGATAATGGCTCAAAAGGATATGGATTTGTTCACTTTGAAA
CAGAGGAAGCTGCTCAGAGAGCCATTGAAAAGGTCAATGGCATGTTGTTAAACGATAAGA
AAGTATTCGTTGGTAGGTTCATTTCTCGCGGCGATCGCCATAAGCAAATCGGCGAGAGGA
TGCGCAACTTCACCAACGTTTACATCAAGAACTTTGGCGACAAAATATCTGAGGAGCTTC
TGCGGGAACATTTTGAGAAATACGGATCTGTGAAGAGTGTGGCAGTTATGAAAGATCAGG
AGGGAAATTCTCGTGGGTTTGGCTTCGTTGCGTACGGGAGTCATGAAGAAGCTGAAAAAG
CAGTTCAGGCGATGAACGGTCAAGATATCAATGGTCAAGAACTTTACTGTGGCCGAGCTC
AGAAGAAAGCGGAGCGCATGTCTGAATTGAGACAAAGATATGAAAAGCAGAAAATGGAAC
GCATTCAACGTTATCAAGGTGTCAATCTTTATGTGAAGAATCTTGATGATACAATCGGTG
ATGACGGACTCAGGGAAGCTTTTGCTCCTTACGGAACCATTACAAGTGCTAAAGTATCAA
CAGAGGTGATGCCGGACTCCGAACGTTCGCGTGGATTTGGATTCGTCTGTTTCTCTTCAC
CAGAAGAGGCCACAAAGGCCGTTACGGAAATGAACGGACGAATCTTGGGAACGAAACCTC
TGTACGTCGCTTTGGCACAACGTAAGGAAGACCGAAAGCAGCACTTGGCAGCGCAGTACA
TGCAACGTGTTACCAACACTATGGGCATGAGAATCGCTCCACCAAGTCAAATGGTAAATC
AAGGATTTCAATCTGGCGCTCCATACTTCATGCCAATTCAACAAAACAGAGGTTTCTTGC
AAGCTCCACTCATTAGAGCTACTCCAAGATGGCAGGCGGCAACTGCCCAAGGCTTCCCAA
TGCAAAACCAGATGAGAGCAAATGCACCAAGATCTGCAAGCAATGGTCCAGCGATTCGAC
CAATGTCTCAAGGTATGGCAAGAAACAACATGGCACGTGGTATGGACATGATGCAGCAGC
AACGCCAACAACAAATGGCGATGCAGCAGCCTGGTGCCCGCAATCAAGGCTTTAAATACA
CTCAGAATGTACGAAATCCAACCTTGCCTAACAATGGAATGCAAACACAACAGGTGAATC
AAGCCCAGGAAGCAGCAAGTCAACCGGCTGTCCATGTTCTTGGTCAAGAACCACTTACCG
CAAGTATGTTGGCACAAGCTCCTGCTCAAGAACAGAAGCAAATGTTGGGTGAACGATTGT
ATCCACTTATCGAAGCAAGTCATCGTGAACTTGCTTCGAAGATTACTGGAATGTTGTTGG
AAATCGACAACTCTGAACTGCTACACATGCTTGAATCAAGAGAAAGTCTCAAGGCCAAGG
TTGAGGAAGCTGTGGCTGTGTTGCAAGCTCATCAAGCGAAAATGGCTGCTACAAGACGAC
AAACAACTGGCACCACTGGAACAGCTGCTCCTGCTGCCAGCCAACCAGCTCAAGTGCCTG
TGGCTGTTAACGGAGGTGGACAGGAGTAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-93] 1.0E-24 - T[94-180] 1.7E-24 - T[181-276] 1.7E-25 - T[277-388] 4.2E-25 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[11-179] 5.03E-49 - T[191-379] 3.33E-49 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[12-616] 1.7E-233 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[12-90] 17.251 - T[100-176] 16.961 - T[192-269] 19.621 - T[295-375] 18.444 |
| SMART |
RRM_dom (IPR000504) - T[13-86] 1.8E-21 - T[101-172] 4.0E-23 - T[193-265] 1.1E-26 - T[296-371] 2.3E-22 |
| Pfam |
RRM_dom (IPR000504) - T[14-84] 4.5E-19 - T[102-168] 6.4E-20 - T[194-262] 2.9E-22 - T[297-368] 1.7E-16 |
| SMART |
RRM_dom_euk (IPR003954) - T[101-172] 0.49 - T[193-265] 0.06 - T[296-371] 15.0 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[488-625] 1.05E-42 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[543-620] 21.884 |
| Pfam |
PABP_HYD (IPR002004) - T[549-615] 5.7E-29 |
| SMART |
PABP_HYD (IPR002004) - T[555-618] 1.6E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 62.901 % | 796 | 0 |
| PABP4_HUMAN | 61.92 % | 772 | 0 |
| PABP3_HUMAN | 58.716 % | 732 | 0 |