- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C11.21.v7....' >
- Clone 'AHC0AAA198YB07' >
- Transcript 'Moocci.CG.ELv1_2.S25...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S256292.g05932.01.t
Possible name(s)
ASCC3; HFM1; SNRNP200
Gene model
Location
S256292 [4,373 / 10,966]
Amino acid sequence
Length: 1,982
>Moocci.CG.ELv1_2.S256292.g05932.01.p
MADASARQMQYEYKANSNLVLQADRSLIDRRPRDEPTGEVLTLQGKLLGTKMGDKAQRTK
PPQMEERRAKRHRRDEDLRSSYKLKGTTLLSEGIDEMVGIVYKPRTKETRETYEVLLSFI
QAALSDQPRDILCGAADEVILVLKNDKLRDKERRKEIQSLLGPLEDTRYHVLVNLGRKIT
DFGNEKDKETADDNIDETYGVNVQFESDEEVGDEDAFGEVHGESDEEEVDDEGGVEASTN
LVVSASLTNEAGNVNVTKNKDLHPRDIDAYWLQRNLSKVYDDAIVSQQKAEEVLEILKTA
TDHLQCENRLVLLLGFNQFDFIKILREHRQMILYCTLLASAQSDSERTKIEEKMKASSDL
NKILQQLNETEKEDIIKEEQERRERLRKSKVDADLDAMETDEHEKTLQSSSVIDLEDIMF
TQGSHLMANKKCQLPDGSYRKQRKGYEEVHVPALKPKPFKDDEKLIPIEKLPKYAQAAFD
GYKSLNRIQSRLSKTCLESDENVLLCAPTGGGKTNVALLTILREIGKHINSDGTININDF
KIIYIAPMRSLVQEMVGTFSKRLASYGIRVDELTGDHQLCKEEINATQIIVCTPEKWDIV
TRKSGERTYTQLVRLLIIDEIHMLHDDRGPVLEAVVARTIRAIETTQEDVRLVGLSATLP
NYEDVATFLRVNPSKGLFFFDNSFRPCPLEQQYVGITEKKAIKRFQVMNEIVYEKVVENA
GKNQVLVFVHSRKETGKTARAIRDMCLENDTLGHFLREGSASTEVLRTESEEVKNMELKD
LLPYGFAIHHAGMSRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSP
EKGRWVELGALDVLQMMGRAGRPQYDTKGEGVLITSHSELQYYLSLLNQQLPVESQMVAK
LSDMLNAEIVLGNIQNVKDAVTWLGYTYLYIRMLRQPTLYGISHDQIKSDSLLQQHRVDL
VHAAVSALAKNNLVKYDRKSGHIQGTDLGRIASHYYCTNESMATYNQLLKPTLSEIELFR
VFSLSSEFKYITVREEEKMELQKLLERVPIPIKESIEEATAKVNVLLQAHISQLRLEGFA
LMSDMVYVTQSAGRLVRAIFEIVLYRGWAQLAEKCLTLCKMVQSRMWQSMVPLRQFKKVP
DEVVKKIEKKNFPWERFYDLGHNEIGELIRMPKMGKTLHKLIHQFPKMELSVHIQPITRS
TLRVELTITPDFQWDDKLHGLSQAFWIFVEDVDSEIILHHEYFLLKSKYATDEHVVNFFV
PVFEPLPPQYFIRIVSDRWIASETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNHL
YESLYQDKFPCFNPIQTQCFNALYNTSQNVLIGAPTGSGKTVCAEFAIMHALTQTEEARC
VYVTPMESLAKIIYKDWKERFEDILGKKVVLLTGETSTDLKLIARGHIIVSTPEKWDVLS
RRWKQRKNVQNVNLFIIDEIHLLGGETGPEIEVVCSRMRYVSSQLDRQIRIVALGSSIAN
SKDVAQWLGCDSSHTFNFHPNVRPVPLELHIQGFNISHAQSRLLSMTKPVYNAVTKHSPK
QAAIIFATSRKQSKLTAIDMLTFSAADGQPQKFLHCVEEDLAPYLEHVEDETLKEAISNG
VAYLHDGTPEIERSVISQLFTSGAIQVLVVSRTLCWSLTVSAHLVVIMDTQYFNGKIHAY
VDYSVTDVLQMMGRANRPLKDEEGKCVIMCQGSKKDFFKKFLYEPLPVESHLDHSLHDHF
NAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVTHRHLSDSLSELVENTLGDL
EQSKCISVEDEMDISPLNLAMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYE
TLPLRHREDATLRQLLSKVPYKPQNPRFTDPHIKTNLLFQAHLSRLHLPAELQSDTEETL
SKSIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFDGDIINRCTE
KK
Nucleotide sequence
Length: 6,026
>Moocci.CG.ELv1_2.S256292.g05932.01.t
TTTTTAGTATACTATTATATAAGTAATTTGTGTAATAATAATATTTTAATACATAAAGAG
AAACAAAAAAGAGTGTGAAAATGGCGGATGCTTCTGCCCGGCAAATGCAATATGAGTACA
AGGCCAACTCAAATCTTGTCTTGCAGGCCGACAGATCTTTGATAGACAGAAGGCCAAGAG
ATGAACCGACTGGTGAAGTTTTAACTTTACAAGGTAAATTACTTGGGACCAAAATGGGTG
ATAAAGCTCAGAGAACCAAACCTCCGCAGATGGAAGAGCGTAGAGCAAAACGTCACAGGC
GTGATGAAGATTTAAGATCAAGTTACAAATTAAAAGGAACAACTTTGCTATCTGAGGGAA
TTGATGAAATGGTTGGTATTGTATATAAACCAAGGACAAAGGAAACTAGAGAAACTTATG
AAGTTCTACTTAGTTTTATCCAAGCTGCATTAAGTGACCAACCAAGAGATATCTTGTGTG
GGGCTGCAGATGAAGTTATTTTGGTTTTAAAAAATGATAAACTAAGAGACAAAGAAAGAC
GAAAAGAGATTCAATCCTTGTTAGGACCTCTTGAGGATACTCGATACCATGTGTTGGTTA
ATTTGGGTCGTAAAATAACTGATTTTGGAAATGAAAAAGACAAGGAAACTGCAGATGATA
ATATTGATGAAACTTATGGTGTAAACGTTCAATTTGAGTCAGACGAAGAAGTTGGTGATG
AAGATGCTTTTGGTGAAGTTCATGGGGAATCTGATGAAGAAGAAGTTGATGATGAAGGGG
GAGTTGAAGCATCAACAAATTTGGTTGTTTCCGCCAGCCTCACTAATGAAGCTGGAAATG
TAAATGTTACTAAAAATAAAGACTTGCATCCAAGAGACATCGATGCTTATTGGCTGCAAA
GAAATTTAAGCAAAGTGTATGATGATGCCATAGTTTCACAACAAAAAGCTGAAGAAGTTT
TGGAAATATTGAAAACGGCAACAGATCATTTGCAATGTGAAAACAGGCTTGTTTTGTTGC
TTGGATTTAATCAATTCGATTTTATTAAAATTCTAAGAGAACACAGACAGATGATACTTT
ACTGTACTTTGTTAGCCAGTGCACAAAGTGATAGCGAAAGAACAAAAATTGAAGAAAAGA
TGAAAGCTTCAAGCGATTTAAATAAAATTTTACAGCAACTAAATGAAACTGAAAAAGAGG
ACATAATTAAAGAAGAACAAGAAAGAAGGGAGAGGTTAAGAAAAAGTAAAGTCGATGCAG
ATCTTGATGCTATGGAGACTGATGAACATGAAAAAACCTTACAATCTTCTTCTGTTATTG
ATTTGGAAGACATTATGTTTACACAAGGATCACATCTTATGGCTAACAAGAAATGTCAAC
TTCCAGATGGATCATATCGAAAACAACGTAAAGGATATGAAGAGGTTCATGTTCCAGCTT
TAAAACCTAAGCCCTTTAAAGATGATGAAAAACTAATTCCCATTGAAAAATTACCAAAAT
ATGCACAAGCTGCATTCGATGGTTATAAATCACTTAACCGAATTCAGAGTCGACTGTCAA
AAACTTGTCTAGAGTCTGATGAGAATGTTTTGTTATGTGCGCCAACCGGAGGCGGAAAAA
CAAATGTTGCACTGTTAACTATTTTGAGAGAAATTGGAAAACATATCAACAGTGATGGTA
CTATAAATATTAATGATTTTAAAATAATTTATATTGCACCAATGAGATCTTTAGTGCAAG
AAATGGTGGGTACTTTTAGTAAGCGTTTAGCTTCTTATGGAATCAGAGTTGATGAGTTAA
CAGGAGATCATCAACTGTGTAAAGAGGAAATAAATGCCACCCAGATTATTGTCTGTACTC
CAGAAAAATGGGATATAGTTACTCGAAAAAGTGGTGAAAGAACATACACACAACTTGTAA
GATTACTTATTATTGATGAGATTCATATGCTTCATGATGATCGAGGACCTGTTTTAGAAG
CAGTTGTAGCCCGAACTATCCGTGCTATTGAAACAACTCAAGAAGACGTTAGGTTGGTAG
GTTTATCTGCTACTTTACCCAACTATGAAGATGTTGCAACATTTTTGAGGGTAAATCCAT
CAAAGGGTTTATTCTTTTTTGATAACAGCTTCAGACCATGTCCTTTAGAACAGCAGTATG
TTGGTATTACTGAAAAGAAAGCGATAAAGCGTTTTCAAGTCATGAATGAAATAGTTTATG
AAAAGGTTGTTGAAAATGCTGGAAAAAATCAAGTACTTGTATTTGTACATTCTAGAAAAG
AAACAGGCAAAACAGCAAGAGCTATTCGAGACATGTGTCTGGAAAATGACACATTGGGTC
ATTTTTTGAGAGAAGGTTCAGCTTCAACAGAAGTTTTAAGAACTGAATCTGAAGAAGTAA
AAAATATGGAATTAAAAGATTTACTGCCTTATGGATTTGCTATTCATCATGCAGGTATGA
GCAGAGTTGACAGAACTTTGGTTGAAGATTTGTTTGCAGACCGACACATTCAAGTTCTTG
TTTCTACAGCGACTTTGGCATGGGGTGTCAATTTGCCTGCCCATACTGTCATTATAAAAG
GAACACAAGTTTACAGCCCTGAAAAGGGTAGATGGGTAGAACTTGGTGCTTTAGATGTAT
TGCAAATGATGGGAAGAGCTGGTCGACCTCAGTATGATACAAAAGGAGAAGGTGTTCTTA
TTACCTCTCACAGTGAGTTGCAATATTATTTATCATTGTTAAATCAACAGTTGCCAGTGG
AAAGCCAAATGGTTGCAAAATTGTCAGACATGCTCAATGCTGAAATTGTTTTGGGAAATA
TTCAAAATGTCAAAGATGCCGTAACATGGTTAGGTTACACATACTTGTACATCAGAATGC
TTCGACAACCTACTCTGTACGGAATTAGTCATGACCAAATCAAATCAGACTCATTGTTGC
AACAACACAGGGTAGATCTTGTTCATGCTGCTGTCTCAGCTTTGGCAAAAAATAATCTTG
TTAAATATGACAGAAAGAGCGGTCACATTCAAGGTACAGATCTTGGAAGAATTGCAAGTC
ATTATTACTGTACCAATGAAAGTATGGCTACCTACAACCAATTATTAAAACCAACATTGA
GTGAAATTGAATTATTTCGTGTATTTTCTTTATCTTCTGAGTTTAAATACATTACTGTAA
GAGAAGAAGAAAAGATGGAGTTACAGAAATTGCTTGAAAGAGTTCCTATTCCCATTAAAG
AAAGCATTGAGGAAGCTACTGCTAAAGTAAATGTCTTGTTGCAAGCTCACATTTCCCAAT
TGAGGCTAGAAGGATTTGCCTTAATGTCTGATATGGTATATGTTACACAATCAGCTGGTC
GTCTTGTTCGTGCCATTTTTGAAATTGTTTTATATAGGGGTTGGGCACAACTTGCAGAAA
AATGTCTTACATTGTGTAAAATGGTGCAAAGTCGTATGTGGCAATCCATGGTACCATTAA
GACAGTTTAAAAAGGTTCCAGATGAGGTTGTGAAAAAAATAGAAAAGAAAAATTTTCCGT
GGGAGAGATTTTATGATTTGGGACACAATGAAATTGGTGAATTAATTCGAATGCCAAAAA
TGGGTAAGACCCTTCACAAACTTATTCATCAATTTCCTAAAATGGAATTATCAGTTCACA
TTCAGCCAATTACCAGATCAACTTTGAGGGTTGAACTTACAATAACTCCGGATTTTCAAT
GGGATGACAAGTTACATGGTCTCTCACAAGCATTTTGGATTTTCGTGGAAGATGTTGACA
GTGAAATCATTCTTCATCATGAATACTTCCTCCTGAAGAGCAAATATGCAACAGATGAGC
ATGTTGTTAATTTTTTTGTGCCTGTATTTGAACCACTGCCTCCTCAATATTTTATCAGGA
TTGTTTCTGATAGATGGATTGCATCTGAAACTCAATTACCTGTGTCTTTTAGGCATTTAA
TTTTACCAGAAAAGTATCCACCACCCACTGAATTGTTAGATCTTCAACCATTACCTGTCA
CAGCCTTAAGAAATCACCTTTATGAATCTTTGTATCAAGATAAGTTTCCTTGTTTTAATC
CCATTCAAACTCAATGTTTCAATGCTTTGTACAACACAAGTCAAAACGTTTTAATTGGTG
CCCCGACTGGAAGCGGCAAAACAGTTTGTGCTGAGTTTGCTATAATGCATGCACTTACTC
AGACAGAAGAAGCAAGATGTGTGTATGTAACTCCAATGGAATCTTTAGCAAAGATAATAT
ACAAGGATTGGAAGGAAAGGTTTGAGGACATTTTAGGAAAGAAGGTTGTGTTGCTTACTG
GAGAAACAAGCACAGATTTAAAGTTAATTGCAAGAGGACATATTATTGTTTCAACACCAG
AGAAATGGGATGTTTTATCTAGAAGATGGAAACAACGAAAAAATGTACAAAATGTTAATT
TATTTATCATTGATGAAATTCATTTACTCGGTGGAGAGACTGGTCCAGAAATAGAAGTTG
TTTGTTCCAGGATGAGGTATGTGTCTTCTCAACTGGATAGACAAATTCGTATTGTTGCTT
TGGGATCTTCAATAGCAAATTCTAAAGATGTTGCTCAATGGTTAGGATGTGATTCATCGC
ATACTTTTAATTTTCACCCAAATGTTAGGCCCGTTCCATTAGAGTTGCACATTCAAGGAT
TTAATATCAGCCATGCTCAGTCTCGACTGCTAAGTATGACAAAACCGGTGTACAATGCTG
TCACAAAGCATTCCCCAAAACAAGCAGCTATTATATTTGCAACTTCCAGAAAACAAAGCA
AACTCACTGCAATAGATATGCTGACCTTTTCTGCAGCTGATGGACAACCACAAAAATTTT
TGCACTGCGTAGAAGAAGATTTGGCTCCTTATCTTGAACATGTTGAAGATGAAACTTTGA
AGGAGGCAATATCAAATGGAGTTGCTTATCTTCATGATGGAACACCAGAAATAGAAAGAA
GTGTCATTAGCCAATTATTTACATCTGGGGCAATTCAAGTTTTAGTCGTATCTCGTACAT
TGTGCTGGTCGCTAACAGTTTCTGCTCATTTAGTTGTAATTATGGATACTCAGTATTTTA
ATGGCAAAATCCATGCATATGTTGATTATTCTGTCACAGATGTTTTGCAAATGATGGGTA
GAGCTAATAGGCCTCTTAAAGATGAAGAAGGAAAATGTGTCATAATGTGCCAAGGATCTA
AAAAAGATTTCTTCAAGAAGTTTTTGTATGAACCCCTTCCAGTTGAATCTCACTTGGATC
ATTCATTACATGATCATTTTAATGCTGAAATTGTAACCAAAACCATTGAAAACAAACAAG
ATGCTGTCGACTATCTGACATGGACTTTCTTGTATCGTAGAATGACGCAAAATCCAAACT
ATTACAATCTTCAGGGCGTCACACACCGACACTTGTCAGACAGTCTCTCTGAACTTGTTG
AAAACACTTTGGGTGATTTGGAACAATCAAAATGTATTTCTGTTGAAGATGAAATGGACA
TATCACCATTGAACCTTGCAATGATTGCAGCTTACTATTATATTAATTATACAACCATTG
AGCTATTCAGCATGTCTTTGAATGCAAAGACAAAAATTAGAGGCTTGATAGAGATTATAA
GCAATGCTGCAGAATATGAAACCTTGCCTTTAAGACACCGTGAGGATGCGACACTACGAC
AATTGCTCTCAAAGGTCCCGTACAAACCACAGAATCCAAGGTTCACAGATCCTCATATTA
AAACAAATTTGTTGTTTCAAGCACATCTTTCGAGATTGCATTTGCCTGCTGAACTGCAGT
CTGATACAGAGGAAACCCTCTCCAAATCCATTCGTCTAATACAAGCTTGTGTTGACGTTC
TATCTTCAAATGGTTGGTTATCGCCTGCCCTAGCAGCTATGGAGTTGGCGCAGATGGTTA
CACAAGCAATGTGGAGCAAAGACTCGTACTTAAAACAGCTTCCGCATTTTGATGGTGATA
TTATAAACCGTTGCACAGAAAAGAAA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[427-670] 6.84E-44 - T[680-892] 1.48E-47 - T[1214-1509] 1.01E-50 - T[1518-1727] 5.95E-37 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[481-692] 1.5E-32 - T[1328-1532] 4.6E-27 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[487-662] 9.2E-27 - T[1334-1493] 6.4E-25 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[494-677] 21.374 - T[1341-1516] 21.449 |
| SMART |
AAA+_ATPase (IPR003593) - T[499-816] 0.1 - T[1346-1591] 1.0 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[688-925] 11.963 - T[1549-1757] 9.105 |
| CDD |
Helicase_C (IPR001650) - T[688-862] 1.23163E-13 |
| Pfam |
Helicase_C (IPR001650) - T[771-862] 1.8E-6 - T[1610-1697] 7.6E-5 |
| SMART |
Helicase_C (IPR001650) - T[772-864] 1.3E-17 - T[1611-1699] 1.2E-10 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[892-996] 5.98E-7 - T[1727-1828] 3.81E-7 |
| SMART |
Sec63-dom (IPR004179) - T[985-1290] 2.3E-124 - T[1816-1982] 2.9E-28 |
| Pfam |
Sec63-dom (IPR004179) - T[986-1289] 3.0E-92 - T[1816-1970] 8.8E-51 |
| Gene3D |
C2_domain_sf (IPR035892) - T[1185-1293] 1.4E-48 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ASCC3_HUMAN | 41.062 % | 1485 | 0 |
| U520_HUMAN | 78.445 % | 3268 | 0 |
| HFM1_HUMAN | 30.713 % | 311 | 6.6E-86 |