- Transcript 'KH2012:KH.L4.55.v1.A...' >
- Transcript 'Moocci.CG.ELv1_2.S31...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S315764.g08151.01.t
Possible name(s)
LEMD3; RBM23; RBM39
Gene model
Location
S315764 [28,735 / 30,600]
Amino acid sequence
Length: 595
>Moocci.CG.ELv1_2.S315764.g08151.01.p
MADDIDVEAMLEAPFKQGEENKENGKESSKKSSRHSSSRHRSRDRSRDRKKKRHRSRSRS
RDRSRSHRRRHSSRDRDRSRRRSRSRERRRSRSRSRERRERDRPPVVEEPVVPKERSPSP
PDRDARTVFCMQLSQRIRSRDLEDFFSAVGTVRDVKLIADKHSKRSKGIAYVEFKEMESV
PLALGLSGQKLLGVPMIVQPSQAEKNRVAAAAASNLQRAAMGPTKLYVSELHQNITEEML
KGIFSPFGRIETVQLIKQQGTDNSSGSGFITFHDSDSAKKALDQLDGFEIAGKAMKVTSI
TDPSINPQFAFAMLGGQGGPSFLDNDVVERGGIDLGTTGRLQLMAKLAEGTGLEVPQFAF
AMLGGQGGPSFLDNDVVERGGIDLGTTGRLQLMAKLAEGTGLEVPQVAQQAMSMGQAMGL
GLRGTAAGGGAPPAPDAYSNPTGNSNSNPPIATTCFQLSNMFDPSQETEPDWVEEIRDDV
IEECMKHGKVLHLSNMFDPSQETEPDWVEEIRDDVIEECMKHGKVLHVFVDENSEDHNVY
VKCDSSDAAAKSVSALHGRYFAGKMITAAYVPVVNYHALFPDSTTASIPLKPSNR
Nucleotide sequence
Length: 1,788
>Moocci.CG.ELv1_2.S315764.g08151.01.t
ATGGCTGATGATATTGATGTAGAAGCAATGCTTGAGGCTCCATTTAAGCAAGGAGAAGAG
AACAAAGAAAATGGGAAAGAATCTTCGAAAAAGTCATCGCGTCACAGCAGCAGCCGACAT
AGAAGCAGAGATCGTAGTCGAGACCGAAAGAAGAAAAGGCACAGAAGTCGAAGTAGAAGT
CGTGATAGAAGCAGGAGCCATAGAAGACGACATTCCTCCAGAGATAGAGATCGTTCTCGC
AGACGCTCAAGGTCACGCGAGCGAAGACGTTCAAGGTCGAGATCTCGCGAGAGACGAGAG
AGAGATCGACCACCAGTTGTGGAAGAGCCTGTTGTTCCAAAGGAAAGATCTCCAAGTCCT
CCTGACCGAGATGCAAGGACGGTTTTCTGCATGCAGTTGTCACAAAGAATACGATCAAGA
GATTTGGAGGATTTCTTCTCTGCCGTCGGAACAGTTAGGGATGTGAAATTGATTGCGGAC
AAGCATTCAAAAAGATCAAAAGGCATTGCTTATGTCGAGTTTAAGGAAATGGAATCTGTT
CCACTTGCTCTAGGACTAAGTGGACAGAAACTTCTCGGAGTCCCGATGATTGTTCAACCA
TCCCAGGCTGAGAAGAATCGAGTTGCAGCTGCTGCAGCTAGCAATTTGCAACGAGCTGCG
ATGGGCCCAACTAAGTTGTATGTGTCAGAGTTACATCAGAATATTACAGAAGAAATGTTG
AAGGGAATATTCAGCCCTTTCGGACGAATTGAAACTGTCCAACTCATAAAACAGCAAGGC
ACAGATAATTCCAGCGGGTCAGGATTTATCACTTTCCATGATTCTGATTCTGCAAAGAAA
GCATTGGACCAACTTGATGGGTTTGAAATAGCAGGAAAAGCGATGAAAGTGACAAGTATA
ACAGACCCATCTATAAACCCACAGTTTGCCTTTGCTATGCTTGGTGGCCAGGGCGGGCCT
TCATTCTTGGATAACGATGTTGTAGAAAGAGGGGGCATTGATTTAGGTACAACTGGAAGG
TTACAACTAATGGCAAAACTGGCTGAGGGGACAGGATTGGAAGTCCCCCAATTTGCCTTT
GCTATGCTTGGCGGGCAGGGTGGGCCATCATTCTTGGATAACGATGTTGTAGAAAGAGGG
GGCATTGATTTGGGTACAACTGGAAGGTTACAACTAATGGCGAAACTGGCTGAAGGGACA
GGATTGGAAGTCCCCCAAGTTGCGCAGCAGGCGATGTCAATGGGACAAGCTATGGGGTTG
GGGCTTAGGGGTACAGCTGCAGGTGGTGGAGCTCCACCTGCCCCTGATGCTTACAGTAAC
CCCACTGGTAACAGTAACTCAAACCCTCCAATTGCAACTACATGCTTCCAGCTGTCCAAC
ATGTTTGACCCAAGCCAGGAGACGGAACCTGATTGGGTTGAGGAGATTAGAGATGACGTC
ATCGAAGAGTGCATGAAGCACGGAAAAGTTCTACATCTGTCCAACATGTTTGACCCAAGC
CAGGAGACAGAACCTGATTGGGTTGAGGAGATTAGAGATGACGTCATTGAAGAGTGCATG
AAGCACGGAAAAGTTCTACATGTATTTGTTGATGAAAATTCAGAGGATCACAACGTGTAC
GTGAAGTGCGATTCGTCAGATGCAGCGGCTAAATCAGTCTCCGCGTTGCATGGTCGATAC
TTTGCAGGGAAGATGATCACTGCAGCTTACGTGCCGGTTGTAAACTACCATGCTTTATTT
CCAGATTCAACTACAGCATCAATTCCTTTGAAACCATCGAATCGTTGA
| TIGRFAM |
RBM39_SF (IPR006509) - T[22-353] 8.5E-99 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[58-208] 4.8E-25 - T[209-302] 1.5E-21 - T[448-491] 2.6E-10 - T[492-595] 2.1E-31 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[122-304] 2.03E-40 - T[491-572] 8.09E-14 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[126-203] 14.641 - T[224-302] 17.745 |
| SMART |
RRM_dom (IPR000504) - T[127-199] 7.7E-15 - T[225-298] 2.2E-21 - T[490-569] 0.16 |
| Pfam |
RRM_dom (IPR000504) - T[128-193] 1.3E-10 - T[226-295] 2.7E-20 |
| SMART |
RRM_dom_euk (IPR003954) - T[225-298] 2.8 - T[490-569] 0.036 |
| Pfam |
RBM39_linker (IPR029123) - T[326-359] 1.3E-7 - T[375-472] 1.0E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MAN1_HUMAN | 41.509 % | 102 | 1.65E-22 |
| RBM39_HUMAN | 46.4 % | 390 | 1.22E-129 |
| RBM23_HUMAN | 46.684 % | 293 | 2.07E-93 |