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TRANSCRIPT CARD

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  1. Clone 'cien201681' > 
  2. Transcript 'Moocci.CG.ELv1_2.S33...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S332293.g08813.01.t

Possible name(s)

NKX2-3; NKX2-5; NKX2-6

Gene model

Moocci.CG.ELv1_2.S332293.g08813

Location

S332293 [13,775 / 15,931]

Sequences

Amino acid sequence

Length: 326

>Moocci.CG.ELv1_2.S332293.g08813.01.p
MFAVLLYDRVSVFAHLKRYLRKHSKCEHGNGVQWTVLAYIDGHLAPRRHRYFRAWLRLVV
IYASCLRIFAIITRSKESEKSDNASNCSESPVDGEKKKNDDDTTKNRPRTRRKPRVLFSQ
AQVFELERRFKQQRYLSAPEREHLAQMLKLTSTQVKIWFQNRRYKCKRQRQDKSLELVGA
CPPRRVAVPVLVRDGKPCLGGPMAGGNPSLQAPYSAPYNVTVTPYHSYPSSYNSCGYNSY
PQPNPHANYASSAATYAPTAGYNLGGPSIASNPSVGSVGGIPAGPIHQSGQMTMGPSHFA
PSMTSQVPQRNPHGTSDYMYKLGLCT

Nucleotide sequence

Length: 981

>Moocci.CG.ELv1_2.S332293.g08813.01.t
ATGTTTGCTGTACTTTTATACGATCGTGTCTCTGTTTTCGCACATTTAAAGCGATACTTG
CGAAAACATAGCAAGTGTGAACATGGAAACGGCGTTCAGTGGACAGTCTTAGCCTACATT
GATGGACACTTGGCGCCAAGACGACATCGGTATTTTCGCGCTTGGTTAAGGCTCGTTGTG
ATTTATGCATCGTGTTTAAGAATTTTCGCCATCATCACTCGATCGAAGGAATCGGAAAAA
TCAGACAATGCCAGCAACTGCAGCGAAAGTCCCGTCGACGGAGAGAAGAAGAAGAATGAC
GACGATACGACTAAAAATCGACCGCGTACAAGACGAAAGCCAAGGGTTCTTTTCTCACAA
GCGCAAGTTTTTGAACTTGAACGACGATTTAAACAACAACGTTATCTGTCAGCCCCAGAA
CGCGAACATTTGGCTCAGATGTTAAAGTTGACTTCAACCCAGGTTAAAATTTGGTTTCAA
AACCGGCGATACAAATGCAAACGACAACGTCAAGATAAAAGCTTAGAACTTGTAGGCGCC
TGTCCCCCACGACGTGTTGCTGTTCCGGTGCTAGTAAGAGATGGAAAACCCTGTTTGGGA
GGACCAATGGCAGGTGGTAACCCTTCCCTACAAGCTCCATACTCTGCTCCTTATAATGTC
ACTGTCACTCCATACCATAGTTATCCAAGTTCATATAATTCTTGTGGGTACAATTCTTAT
CCCCAGCCAAACCCTCACGCCAATTACGCAAGTAGCGCAGCTACATATGCCCCAACAGCA
GGTTACAACCTTGGTGGACCTTCAATTGCTTCCAATCCATCAGTCGGGAGCGTTGGTGGA
ATTCCAGCTGGACCTATACATCAATCTGGCCAAATGACTATGGGACCATCCCATTTCGCA
CCCTCCATGACAAGTCAAGTACCTCAACGCAACCCGCATGGTACAAGCGACTATATGTAT
AAGCTTGGATTATGTACATAA

InterProScan

PANTHER
NKX-2.5 (IPR033629) - T[77-263] 1.7E-78
SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[101-170] 1.11E-23
ProSiteProfiles
Homeobox_dom (IPR001356) - T[109-169] 20.471
SMART
Homeobox_dom (IPR001356) - T[111-173] 2.7E-24
Pfam
Homeobox_dom (IPR001356) - T[112-168] 2.0E-20
CDD
Homeobox_dom (IPR001356) - T[112-170] 1.3928E-23
PRINTS
Homeobox_metazoa (IPR020479) - T[133-144] 2.0E-6 - T[148-158] 2.0E-6 - T[158-167] 2.0E-6
ProSitePatterns
Homeobox_CS (IPR017970) - T[144-167] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NKX26_HUMAN 62.5 % 179 2.86E-54
NKX25_HUMAN 58.333 % 162 1.23E-47
NKX23_HUMAN 67.347 % 163 1.47E-47