- Clone 'ma202m06' >
- Transcript 'Moocci.CG.ELv1_2.S64...' >
- Transcript 'Moocci.CG.ELv1_2.S33...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S339887.g09094.02.t
Possible name(s)
PCDH11X; PCDH17; PCDH18
Gene model
Location
S339887 [1,459 / 6,338]
Amino acid sequence
Length: 954
>Moocci.CG.ELv1_2.S339887.g09094.02.p
MLFLHNGTEGQRTMGCYALLIILGFCAISCMTSPIQERSLVVREEDKAGVVIANMADLLH
VNKTEFVNRKFKILSQKFIVDKTTSRRRKLIKPLKWLSVEENTGVITTLRRLDREQECQG
SRVCEVEVKAVMLPQPHFSMLNLRISVEEAPINSPINIDLYRAKDLDFGDNSQMTYRLSE
NGVFRLEQYEDVTGDPHLQLILLKKLDYESEKQYILKLEVTDGGEPVKMSTSVDLVIDVI
DANDNDPVFTEEEYEVTLKENLLAGYVIKTVRAVDLDDGDYGKVHYYLSDREDTMTSHVP
YRDIVKVDESTGAVSLMQKLDRELHNGIRIPIEARDSDSTNQRIGYTWLVIHAVDINDNA
PVITVNFIVESEGSQAYLSESAQIGTFVAYVIVSDADDGRNGEVKTTVISKGLTASGEVY
SDARDTFKLVKNGLIQTNKKLDREICSQYQVVIVACDAGHSQNCSEKIIQIDVLDENEHP
PVFDALTQHVTLREDNMVGTFVTTVQAYDGDSENSPSYRRNKEGEVVESHNGDVTYSITG
NEKRFFSIDSLTGQLVLERPLDRESTPVWRVNVIARDGGEPYAQEGTCVVVIEIIDVNDN
RPIFTNPSVNNSLIYASTHNKGEVAQFKAEDKDSGDNAMIRYSILNSPERFHDLFSIESN
SGKIFFNKNFDLNNTAILNREHEIMIQAKDFGVPSLSSLTLVRIMVTNKPLQTNSIIPIT
TPTVASMDFMMLAIGLGSATVFLIILIVIIIIKCRRENEKVRTYRCRETDVKSSSCVSCN
CRDSCDDVRSDTNTAPSSNPDTNSTVVNLSHHKDGTWNATNNRHETDSVLSGSGGYSSNS
SHVTKNDAGSHAVRFHSSPNGHPPTITALAVMGHNLTSPIKKTGGRLCSQQDSDSGRGES
ETDVGSYDVSEACGRLCKRCPVNLGLDDVFQKEMEAHQPKCSGTFWDHDVQINV
Nucleotide sequence
Length: 3,313
>Moocci.CG.ELv1_2.S339887.g09094.02.t
ATGCTATTTTTACACAATGGGACAGAAGGTCAGAGGACAATGGGATGCTATGCATTATTA
ATTATTTTGGGATTCTGTGCCATATCATGTATGACGTCACCAATTCAAGAAAGATCCTTG
GTTGTTAGAGAAGAAGACAAAGCAGGTGTTGTGATAGCCAATATGGCGGATTTGCTTCAT
GTAAACAAAACCGAGTTTGTGAATCGAAAATTTAAGATATTAAGCCAGAAATTTATAGTG
GATAAAACGACAAGTAGGCGGCGGAAGTTGATAAAACCCCTCAAATGGTTGAGTGTGGAA
GAAAATACAGGTGTTATCACAACTCTGCGTCGTTTGGATAGGGAGCAAGAATGTCAAGGG
AGTAGAGTATGTGAGGTCGAGGTCAAAGCCGTAATGCTACCACAACCACATTTTTCAATG
CTGAACCTGAGGATTAGCGTCGAGGAAGCACCAATCAACTCTCCCATTAATATCGACTTG
TACAGAGCTAAAGATTTAGACTTCGGTGATAACTCACAAATGACGTACAGATTGTCTGAG
AATGGCGTGTTTCGTCTTGAACAATACGAGGATGTTACGGGAGATCCGCACCTCCAATTA
ATTCTACTAAAGAAACTGGATTATGAAAGTGAGAAACAATACATCTTGAAGTTAGAAGTT
ACAGACGGCGGAGAACCCGTAAAAATGTCCACATCTGTCGATCTCGTAATTGATGTAATC
GACGCTAATGATAATGATCCGGTATTTACCGAAGAGGAATATGAGGTCACATTGAAAGAA
AATCTTCTTGCTGGCTATGTCATAAAAACAGTCCGTGCTGTAGATCTTGATGACGGAGAT
TACGGCAAAGTTCATTATTACTTGTCCGACAGAGAAGATACGATGACGTCGCACGTTCCC
TACAGAGACATTGTTAAAGTTGACGAATCGACTGGTGCAGTATCGTTGATGCAGAAGCTG
GATAGAGAGCTTCATAATGGAATCAGAATCCCAATTGAAGCACGTGATAGCGATAGTACC
AACCAGAGGATTGGCTACACTTGGTTAGTCATTCACGCTGTAGATATTAATGACAATGCT
CCTGTAATTACCGTTAACTTTATTGTGGAATCAGAGGGAAGCCAAGCGTATTTGTCCGAA
TCTGCTCAAATAGGAACTTTCGTCGCTTACGTAATTGTTTCTGATGCCGATGACGGTAGA
AATGGCGAAGTGAAAACTACAGTTATTAGCAAAGGCCTTACAGCTTCAGGTGAGGTTTAC
TCCGACGCAAGAGATACCTTTAAGTTGGTTAAGAATGGTTTGATCCAAACAAACAAAAAA
CTTGACCGTGAAATTTGCAGTCAATACCAAGTTGTTATCGTTGCATGCGATGCAGGGCAC
TCCCAAAACTGTTCTGAAAAGATTATCCAAATTGACGTCTTGGATGAAAATGAACATCCT
CCTGTATTTGATGCTCTTACTCAACACGTTACTCTGAGAGAAGATAACATGGTTGGGACC
TTTGTAACTACGGTTCAAGCCTACGATGGAGATTCCGAAAACTCACCTTCGTATAGGAGA
AACAAGGAAGGAGAAGTGGTCGAGTCGCATAACGGGGATGTCACTTACTCGATAACAGGA
AATGAAAAACGATTTTTCAGCATCGATTCACTGACAGGACAGTTGGTTCTTGAACGACCA
TTGGATCGTGAAAGTACTCCAGTTTGGAGGGTTAATGTCATCGCTCGTGATGGAGGAGAA
CCGTACGCGCAAGAAGGAACTTGTGTTGTTGTGATTGAAATCATAGATGTAAATGATAAC
CGACCCATTTTCACCAATCCTTCCGTTAACAACTCTTTGATATACGCCAGTACACACAAC
AAAGGCGAAGTCGCCCAATTTAAGGCCGAAGACAAAGATAGTGGCGATAACGCGATGATA
CGGTACTCGATATTGAATTCACCTGAACGTTTCCATGATTTGTTCTCAATCGAATCCAAC
AGTGGAAAAATTTTTTTTAACAAAAATTTTGATTTAAACAACACAGCTATACTTAACCGC
GAGCATGAAATCATGATACAGGCAAAAGATTTCGGTGTACCCAGCCTCAGTTCGTTAACT
CTTGTAAGAATAATGGTAACCAATAAACCATTGCAAACTAATAGCATAATTCCGATCACA
ACACCAACTGTAGCCTCCATGGATTTCATGATGCTGGCAATTGGCTTAGGATCAGCTACT
GTGTTCTTAATAATCTTAATCGTTATTATCATTATCAAATGCAGACGCGAGAATGAGAAA
GTACGAACGTACAGATGCCGAGAAACTGATGTAAAATCGTCATCTTGCGTCTCATGCAAC
TGTAGGGATTCATGTGACGATGTTAGAAGCGATACCAACACTGCTCCATCATCTAACCCG
GATACCAATTCAACTGTCGTTAACTTATCGCACCATAAAGATGGAACTTGGAATGCAACC
AATAACAGACATGAAACAGATTCTGTGTTATCTGGTTCTGGTGGATATTCGTCCAATTCA
AGTCATGTAACCAAAAATGATGCAGGATCTCATGCGGTAAGATTTCACAGTTCTCCTAAT
GGCCATCCACCTACTATAACTGCTCTTGCAGTCATGGGACATAACTTGACTTCCCCCATT
AAAAAAACTGGAGGACGATTATGCTCACAACAAGATAGCGACAGCGGACGAGGCGAAAGT
GAAACTGATGTCGGAAGTTACGATGTATCTGAAGCTTGTGGTCGTCTTTGCAAAAGATGT
CCAGTAAATCTTGGCCTGGATGACGTTTTTCAAAAAGAAATGGAAGCTCACCAACCAAAA
TGCAGCGGTACTTTTTGGGACCACGATGTACAGATCAATGTTTAAGATTTGGCCATAGCG
ACATGTGCTGGATGCCCTCTCCCGATAAAAAGTTTGGAAACAGACTAGAATGCATCAGAG
AAACTCAATTACCTTCTTCAAGTTCAGTTCGAGTGTTACCACCCAAACCTCGATTTTATT
CCGACCGTTCAGGTGGACATGGTTACGGGTCCAATGATAACTTTTTACCTCGTACTTGCT
CAAAAGCAACATCTATCGACCAAATTTCGCAGATTTCTTCATCATGTTCAGCACCTGAGC
GATCAGTCAGTAACGAACAACATTATATTCCTTCCAACGATGGAAAACGCAACGTTTACA
ACAAGATGACGTCATACCCTGTCACTTATACACGTCACCCTTCACTAACTAGAGATGGTC
ACGTGACAGCAATATCAGACTTTCACCGAAAATCTCCAAATTCTATAAACTATCCAAAAG
CTTCAAGAACAAG
| Pfam |
Cadherin_N (IPR013164) - T[41-132] 1.0E-6 |
| SMART |
Cadherin (IPR002126) - T[58-155] 0.2 - T[161-247] 6.9E-18 - T[271-361] 1.0E-14 - T[391-481] 5.1E-15 - T[522-602] 2.5E-22 - T[627-710] 3.5E-12 |
| PRINTS |
Cadherin (IPR002126) - T[95-114] 1.7E-25 - T[249-278] 1.7E-25 - T[448-460] 1.7E-25 - T[462-481] 1.7E-25 - T[481-494] 1.7E-25 - T[551-577] 1.7E-25 - T[586-603] 1.7E-25 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[135-249] 3.28E-14 - T[237-368] 9.57E-23 - T[356-475] 2.43E-15 - T[471-609] 6.28E-25 - T[592-717] 6.28E-19 |
| Pfam |
Cadherin (IPR002126) - T[158-232] 2.2E-8 - T[254-351] 1.5E-9 - T[376-473] 2.5E-10 - T[489-594] 1.5E-12 - T[620-707] 1.2E-12 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[237-247] . - T[592-602] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 29.581 % | 276 | 4.47E-78 |
| PCD17_HUMAN | 30.028 % | 261 | 7.25E-73 |
| PC11X_HUMAN | 28.947 % | 255 | 1.49E-70 |