Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S364413.g10141.03.t

Possible name(s)

PABPC1; TIA1; TIAL1

Gene model

Moocci.CG.ELv1_2.S364413.g10141

Location

S364413 [21,778 / 22,867]

Sequences

Amino acid sequence

Length: 186

>Moocci.CG.ELv1_2.S364413.g10141.03.p
MDSSPYDMNNTYQNSGNTLSGEGVTYCNQMQMQQDDEAFPRTLYVGNLDPQVTDKLILEL
FSVMGQCKSCKTIKDPTGVNDMYCFVEYMNHQNALSALVAMNGRNILGRNHIYKKRSQQS
LDIYHEVSMLFRMLAIFSPVCSSGMNLVSELSDVNFQLSDIKCVVRPMYGSVVTDDQMSV
VQEICG

Nucleotide sequence

Length: 604

>Moocci.CG.ELv1_2.S364413.g10141.03.t
AGGAATTAAGAATTAAAAACAGAATAACATAACAACCTTCATAATGGATAGTAGTCCTTA
TGATATGAATAACACTTATCAAAATTCTGGAAATACATTATCTGGTGAAGGAGTAACATA
TTGTAATCAAATGCAAATGCAGCAGGATGATGAAGCATTTCCCAGAACTTTGTATGTGGG
AAATCTTGATCCTCAAGTAACAGACAAGCTTATATTAGAATTATTCAGTGTTATGGGGCA
ATGTAAATCATGCAAAACAATAAAAGATCCAACGGGAGTAAACGATATGTATTGTTTTGT
GGAGTACATGAATCATCAAAATGCTCTGTCAGCGTTGGTTGCTATGAATGGAAGAAACAT
TTTAGGAAGGAACCATATTTATAAAAAAAGAAGCCAGCAGTCTTTAGATATATACCACGA
AGTAAGCATGTTATTCAGAATGCTGGCAATATTTTCTCCGGTGTGCTCTTCTGGCATGAA
CCTGGTTTCTGAGCTGAGCGATGTTAATTTCCAATTGTCAGATATAAAATGCGTTGTAAG
GCCAATGTACGGATCAGTTGTGACAGATGACCAAATGTCGGTTGTGCAGGAAATATGCGG
ATGA

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[9-121] 1.2E-19
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[30-110] 2.01E-21
ProSiteProfiles	RRM_dom (IPR000504) - T[41-119] 13.771
SMART	RRM_dom (IPR000504) - T[42-115] 1.2E-15
Pfam	RRM_dom (IPR000504) - T[43-110] 8.2E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TIAR_HUMAN	60 %	85.5	6.39E-20
TIA1_HUMAN	56.757 %	82.8	5.43E-19