- Transcript 'KH2012:KH.C8.309.v1....' >
- Transcript 'KH2012:KH.C8.105.v2....' >
- Transcript 'KH2012:KH.C12.96.v1....' >
- Transcript 'KH2012:KH.C5.108.v1....' >
- Transcript 'Moocci.CG.ELv1_2.S41...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S414058.g12435.01.t
Possible name(s)
LRP6; SORL1
Gene model
Location
S414058 [15,425 / 18,022]
Amino acid sequence
Length: 347
>Moocci.CG.ELv1_2.S414058.g12435.01.p
MIILQLAAQIQRIFNKSKLFIVQNKIIIHGFPQPDTIPTTQPAIIDTSTTTTTKTTTETT
TTATTVTTMTISKNTECLLPNIFRCMKEDDCVPSSLVCDGYADCKDGSDEFNCPCKDNEY
RCVNGDCIPESKKCNGVDDCGDLSDEVIWCSVLQIPTLQEVTKPTSTQQATVSITTMATN
TTALPIDIFTDTTEPFQKQQNYTQKVIVIQSTTSDTKPLLFTTESDTTRVNTLEASESST
LAASINAALVTTKVESQAAKIKTNNQSKANLHTQPKTIPPSYKPYRRCEENPCQNKGHCG
VVDSSEGFVCICQKGFKGKLCEGKCKDETCSSANNNTISLISILSYT
Nucleotide sequence
Length: 1,044
>Moocci.CG.ELv1_2.S414058.g12435.01.t
ATGATCATTCTTCAGTTGGCAGCACAAATTCAAAGAATTTTTAATAAAAGCAAATTGTTT
ATCGTTCAGAACAAGATTATAATACACGGTTTCCCCCAACCCGACACAATTCCAACAACA
CAACCAGCAATAATAGACACATCTACTACAACAACAACAAAAACAACCACCGAAACGACA
ACAACTGCAACCACCGTAACCACTATGACCATCTCTAAAAATACCGAGTGCTTGCTTCCC
AATATCTTCCGATGCATGAAAGAAGACGATTGTGTTCCGAGCTCATTGGTGTGCGATGGC
TATGCGGATTGCAAAGATGGCTCTGACGAGTTTAACTGCCCTTGCAAAGACAATGAATAC
AGATGCGTTAATGGGGATTGCATACCAGAGTCGAAAAAATGTAATGGCGTGGATGATTGT
GGGGATTTGAGCGATGAAGTAATTTGGTGTTCCGTTCTACAAATACCAACTTTACAGGAA
GTGACAAAACCTACGTCAACACAGCAAGCAACAGTGTCAATAACGACAATGGCCACAAAT
ACAACAGCCTTACCTATTGACATTTTTACAGATACAACGGAACCATTCCAAAAACAGCAA
AACTACACACAAAAAGTAATTGTAATTCAATCCACAACATCAGATACGAAACCTTTGCTA
TTTACGACGGAATCTGATACGACGAGAGTAAATACGCTCGAAGCTAGCGAGTCGAGCACG
CTTGCAGCTTCAATAAATGCGGCACTGGTTACCACGAAAGTTGAATCTCAGGCAGCTAAG
ATAAAAACAAACAATCAAAGCAAAGCCAATTTGCATACTCAACCTAAAACAATTCCACCA
AGCTATAAGCCGTACAGAAGATGCGAAGAAAATCCTTGCCAGAACAAGGGTCACTGTGGA
GTCGTTGATTCATCAGAAGGATTCGTTTGCATATGTCAAAAGGGTTTTAAAGGAAAACTA
TGCGAAGGAAAATGCAAAGACGAAACTTGTTCTTCTGCAAATAATAACACGATTTCTCTG
ATATCAATTTTGAGTTATACATAA
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[76-113] 4.7E-10 - T[115-146] 5.9E-9 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[76-114] 12.9 - T[114-151] 12.5 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[76-113] 7.5E-5 - T[114-152] 7.0E-11 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[80-115] 9.42E-9 - T[114-147] 1.57E-8 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[83-113] 3.32676E-8 - T[115-146] 7.36486E-11 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[89-110] 4.9E-11 - T[125-146] 4.9E-11 |
| SMART |
EGF-like_dom (IPR000742) - T[90-128] 140.0 - T[287-322] 0.0026 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[127-150] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[284-322] 18.49 |
| Pfam |
EGF-like_dom (IPR000742) - T[288-319] 5.3E-7 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[310-321] . |
| Protein Name | Identity | Bit Score | e-value |
|---|