Aniseed - Transcript Card

Transcript 'Moocci.CG.ELv1_2.S42...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S424201.g12956.01.t

Possible name(s)

GPSM1; RAPSN; TTC28

Gene model

Moocci.CG.ELv1_2.S424201.g12956

Location

S424201 [6,824 / 10,509]

Sequences

Amino acid sequence

Length: 220

>Moocci.CG.ELv1_2.S424201.g12956.01.p
MGLNNSSLSDTIDDVKYSALYDETLCGLRNNGTKEDVESWETKLCKRIKSPNERWKVLTY
ALRKFEGWGRYRYMLHMTVKQIEAAHEAKEQGKLNVRKTVENTLLSNILLARSFADLARA
NYWLSEFKKCIEYSTKSLDYIGKCRGENIQQTSKLGGEVHLCRGVAHLNMGNFRAALEDI
EKSLSIAHSQNLQSLECMACCELGRLYIDLMDYEKYKKIG

Nucleotide sequence

Length: 705

>Moocci.CG.ELv1_2.S424201.g12956.01.t
TAAGCCTACAACATTAATTAAATAAAAAACAATAAAACAAAAATGGGTTTGAACAACAGT
TCTTTAAGTGATACAATTGATGACGTCAAATACTCAGCTCTTTATGACGAAACACTGTGT
GGATTACGCAATAATGGAACAAAAGAAGATGTTGAATCTTGGGAGACAAAATTGTGCAAG
CGAATAAAATCACCGAACGAAAGGTGGAAAGTTTTAACATACGCACTGAGAAAATTCGAA
GGGTGGGGAAGATACAGATACATGCTCCATATGACAGTGAAACAAATAGAAGCAGCACAC
GAAGCAAAGGAACAAGGCAAACTGAACGTCAGAAAAACAGTGGAAAACACGTTACTTAGC
AACATTCTGTTGGCGAGGTCATTTGCGGATTTAGCACGCGCCAACTATTGGCTTTCAGAA
TTTAAAAAATGCATCGAATACTCTACAAAGAGTTTAGATTACATTGGAAAATGCAGAGGC
GAAAACATTCAACAAACTTCAAAATTGGGAGGTGAAGTTCATTTGTGCAGAGGGGTAGCA
CACTTAAATATGGGGAATTTTAGAGCAGCTCTCGAAGACATTGAAAAATCACTGAGTATA
GCGCATAGCCAAAACCTGCAAAGTTTGGAGTGTATGGCTTGTTGTGAATTGGGGAGACTG
TACATTGATTTAATGGATTATGAAAAGTATAAGAAAATTGGATAA

InterProScan

Pfam	Rapsyn_myristoylation/link_N (IPR019568) - T[30-88] 2.4E-6
Gene3D	TPR-like_helical_dom_sf (IPR011990) - T[61-219] 7.4E-12
SUPERFAMILY	TPR-like_helical_dom_sf (IPR011990) - T[110-215] 6.9E-10
SMART	TPR_repeat (IPR019734) - T[111-144] 61.0 - T[157-190] 0.0033

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RAPSN_HUMAN	33.69 %	87.8	2.36E-20