- Transcript 'Boschl.CG.Botznik201...' >
- Clone 'cicl049n12' >
- Transcript 'Moocci.CG.ELv1_2.S42...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S425391.g13019.01.t
Possible name(s)
RORA; RORB; RORC
Gene model
Location
S425391 [30,898 / 36,660]
Amino acid sequence
Length: 907
>Moocci.CG.ELv1_2.S425391.g13019.01.p
MDVHRHNPFPQNLTMPPYNQAASSVNEPHMLDQTSYEVFHSQQQTQQQLGGPITTPESSH
FHIASQDLMNSHQVNQTHHPMENAIHRQQPFQGNQFRQMLPPHEENGWNDRNGRVPSLEE
LRWRDLYRNVPARAQIEIIPCKVCGDKSSGIHYGVITCEGCKGFFRRSQQNNSAYSCPRH
GNCVIDRTNRNRCQHCRLQKCLRMGMSRDAVKFGRMSKKQRDRLYMEVIKHQQTQDKEPT
EQYADSPSSHAPITVPVSGLSPQALCNIPNNLPLNALNRDGYQPPTYHEAVIMPQVENGQ
LNHHRLQNSESLSPGHLTTFTSLPLYRNRNFVDLNTVSMNGSNDIQFEPQAKMPHREIPM
SPNNISYIEQNKSDEEINLNSPSYMYGSPDCNENLLLNITKSFKATCTKTREEIQTVFKE
ETTTEEVEIIKSKSQRDLWVLCTEKITESIQRVVEFAKHVEVFMALKQSEQIVLLKAGSL
EVVLIRMSRQFDVNTNKFLFDGKLLEKDNFSALGNSELLGRVFDFVKAIAEFGLNDDQIA
LLCCTVLITGDRTGLKEVEKINTTQAKVIRALQDQLLLTHPQDPNLITKVLSNLSALREI
YIMHLNFCHEIKAKNTEIDFPPLYKELFLSDEIEYVRQQNNFSEIKREKSSARSSSIESE
NVEEIDNGSYNEIKILNQPFIKFINHVKSHSLDTNEKTGLDRFESKQAGSSNIHERNTSG
SSALTSDSGCALSTVEHEDVAINTSNCTNQDTRNRISSLQSVGTYSPILSDNGVMDNSPP
MQSNEYAMDGYYRRISIAGDSGCDADSPMQQPMDLSQVLQTTTVVTCKEEIPDDHHGHPT
FQPNSSLSQYPREMTILNTVSNSTLSNDRNHSPLLYTGRIPLNPTENIQNLQEPYGTKSR
NMYNSYQ
Nucleotide sequence
Length: 3,404
>Moocci.CG.ELv1_2.S425391.g13019.01.t
AGGTTTTTTGCGTAAAAGGCAGGTTAATAAAGTTAATCGTATCATGAGTATTTGACTGTT
TTTTTTTCTATTTATTAACCGATTGTTAGCCAGTTTGCGGTTAGTTGGATTATGGACGTC
CATAGACATAATCCTTTTCCACAAAATTTAACAATGCCTCCGTATAATCAAGCTGCATCT
TCAGTGAACGAACCTCACATGTTGGATCAGACAAGCTATGAAGTATTCCACTCTCAACAA
CAAACACAACAACAGCTTGGTGGGCCAATAACTACGCCAGAGTCGAGTCATTTTCACATT
GCGTCACAAGATTTAATGAATAGTCATCAAGTTAACCAAACTCATCATCCAATGGAAAAT
GCAATCCATCGCCAACAACCGTTTCAAGGAAATCAGTTTAGGCAAATGCTGCCGCCACAT
GAGGAAAATGGATGGAATGATCGAAATGGGAGAGTTCCAAGTTTAGAAGAATTAAGATGG
AGAGATTTATATAGAAATGTTCCAGCAAGAGCTCAAATTGAAATCATACCTTGTAAAGTT
TGTGGAGACAAATCGTCAGGGATACATTATGGCGTAATCACGTGCGAAGGTTGCAAGGGT
TTCTTTCGACGTAGTCAACAAAACAACTCGGCGTACTCCTGCCCACGCCATGGCAATTGC
GTCATCGATAGAACAAACCGGAACCGGTGCCAGCATTGCCGTCTTCAGAAGTGTCTACGG
ATGGGAATGTCCAGAGACGCTGTTAAATTCGGCCGGATGTCGAAGAAGCAGCGTGACCGT
TTGTATATGGAGGTGATAAAACACCAGCAAACACAAGATAAAGAGCCTACAGAACAATAT
GCCGACAGCCCTTCTTCTCATGCTCCGATCACTGTTCCTGTATCCGGATTATCTCCACAG
GCGCTCTGTAATATTCCAAATAATTTACCTTTAAACGCTTTAAACCGTGATGGCTATCAA
CCTCCAACCTATCACGAAGCGGTTATAATGCCTCAAGTTGAAAACGGGCAATTGAATCAT
CACCGTTTGCAGAATTCAGAATCTCTGTCACCAGGACACCTTACTACTTTTACCAGCTTA
CCGCTTTACCGCAATCGTAACTTTGTTGATTTAAACACTGTTTCCATGAACGGTTCAAAT
GATATACAGTTCGAACCTCAAGCAAAAATGCCTCATAGAGAAATACCTATGTCTCCGAAC
AACATTAGTTATATAGAACAAAACAAATCTGACGAAGAGATTAATTTAAATTCACCTTCT
TATATGTACGGCTCTCCAGATTGTAACGAAAATCTTTTATTGAATATTACGAAATCGTTT
AAAGCAACTTGCACAAAAACTAGAGAAGAAATTCAAACTGTTTTTAAAGAAGAAACAACT
ACAGAAGAAGTTGAAATTATAAAATCAAAGTCTCAAAGAGATCTTTGGGTTTTGTGCACA
GAAAAAATAACAGAATCTATACAACGTGTTGTGGAGTTTGCTAAACACGTTGAAGTTTTT
ATGGCACTGAAGCAATCAGAACAAATTGTCCTTCTCAAAGCAGGAAGCTTAGAAGTTGTA
CTTATTCGGATGAGCAGACAGTTTGATGTCAACACTAACAAATTTCTTTTTGACGGAAAA
CTTTTAGAAAAGGATAATTTTTCTGCATTGGGTAATTCAGAGCTTCTAGGACGAGTGTTT
GACTTTGTCAAAGCGATTGCTGAGTTTGGTTTAAACGATGATCAGATAGCTTTATTATGT
TGTACTGTTCTGATAACTGGAGATCGAACAGGCCTAAAAGAAGTTGAAAAAATTAATACC
ACCCAAGCAAAAGTTATCCGGGCTTTGCAGGATCAGTTGTTGTTGACTCATCCTCAAGAC
CCAAACCTTATTACTAAGGTATTATCGAATCTTTCTGCATTACGTGAAATATATATTATG
CATTTAAATTTTTGCCACGAGATTAAAGCGAAAAATACTGAAATTGATTTCCCTCCACTG
TATAAAGAACTTTTTCTTTCTGATGAAATTGAATATGTACGCCAACAGAATAATTTTTCT
GAAATCAAAAGAGAAAAAAGCTCTGCTAGATCATCAAGTATCGAGTCAGAAAATGTCGAA
GAAATAGATAACGGTAGTTACAATGAAATAAAAATATTAAATCAACCATTTATTAAATTC
ATAAACCACGTCAAATCCCACTCCTTGGACACCAACGAAAAGACAGGTTTGGACAGATTT
GAATCTAAACAAGCAGGATCAAGCAACATTCACGAACGTAATACCTCAGGTAGTTCTGCG
CTAACGAGTGATAGTGGTTGCGCACTAAGCACTGTGGAACACGAAGACGTAGCTATTAAT
ACCAGCAACTGCACCAACCAGGATACAAGAAACAGAATTTCAAGTTTGCAATCTGTTGGC
ACTTATTCACCAATTTTATCTGATAATGGTGTAATGGATAACTCACCACCTATGCAAAGT
AATGAATATGCAATGGATGGTTATTACCGCAGAATAAGCATAGCTGGAGACAGTGGGTGC
GATGCTGATAGTCCTATGCAACAACCAATGGATCTCTCACAAGTATTACAAACTACAACT
GTAGTAACCTGCAAAGAAGAAATCCCAGATGACCATCATGGTCATCCCACATTTCAACCA
AACTCTAGTCTCAGTCAGTATCCGAGAGAAATGACAATTCTTAATACAGTTTCTAATTCA
ACACTATCTAATGACAGAAACCATTCTCCTCTTTTATACACAGGGAGAATTCCATTAAAC
CCGACAGAAAATATACAGAACTTGCAAGAACCCTATGGAACAAAATCAAGAAACATGTAC
AATAGTTACCAATAACGTATTTATTTTTATGTTTTTATTTTAAAGATTTACTGTGGATAT
TTAATTTATAATTTCTTTGAAAGAGTAGCCTAATCTAAATGCAATGTCTCATTAAACCTA
TTAAAGTGTTGAACAACGTACTAACTCAAACAAGATACAAACTATGTGCACTGTGGAAAT
ATCCGCTTAAAGCATCAAAAACGAATTTATTTTGATTTACACCTTATAATATATTGCTTT
TATTTTATGCATTTTTTCCTTCAATCNNNNNNNNNNTTTTTTTTGTAACTCATGCAATAG
TGCAATTATATACAATTGTTGCAATAAGTTATCGTTAGTCAAACTAACTCTAAACATTAC
TTTTAACTTTCAAACATTGTGTAAAGTTAGTATTTGATATTATTATCAATTCTAAGTTAT
TACGTTGACTTTAATAAGTCACTGTGACCTGAAAATAGTCATTACATTAGAATAATTTCA
GTGCCTTAAATGCTACCCAAAAAGGTGCAGATCGGGGCTTATTGTGAATTGCGATTTTTG
TTATTTTACAGTATTATATATTATTAAAAGACTTTGAAAATGTT
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[133-242] 1.8E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[138-213] 19.943 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[138-209] 5.3E-39 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[140-208] 3.8E-32 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[141-167] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[141-157] 8.4E-18 - T[157-172] 8.4E-18 - T[190-198] 8.4E-18 - T[198-206] 8.4E-18 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[202-212] 5.1E-16 - T[445-466] 5.1E-16 - T[466-482] 5.1E-16 - T[532-547] 5.1E-16 - T[589-606] 5.1E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[421-628] 1.97E-49 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[444-601] 9.4E-23 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[445-603] 1.5E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORG_HUMAN | 38.462 % | 315 | 2.04E-97 |
| RORB_HUMAN | 38.69 % | 297 | 1.73E-91 |
| RORA_HUMAN | 63.576 % | 195 | 1.32E-53 |