- Region 'REG00000832' >
- Molecular Tool 'cieg31g12-MO (Hamada's MO)' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R9.3...' >
- Transcript 'Moocci.CG.ELv1_2.S43...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S436781.g13630.01.t
Possible name(s)
RARA; RARB; RARG
Gene model
Location
S436781 [32,017 / 41,747]
Amino acid sequence
Length: 350
>Moocci.CG.ELv1_2.S436781.g13630.01.p
MNMVAFQEQWRSRMNGILTDMFYNQQNNGMMMVDHPVPQMQGSMGNHPMAMHYHQPQQMA
HPHQGYHYQANHHLSPNSMVHSHAFQGQPRWDYSRTSPDSTGLSSAGSNTSGSESDHLAP
SPPSPPPPPRTYKPCFVCAVRNDRNKKRGKEKDTKNGDGSATETIVIAPEIQATIDAVKK
AQEETFPKMDTLDKYAPFLRICTRFDPKSDTMTFSDGLVLSRKQLHDCAFGPMTEQVFGF
AETLVPLEIDHTEGGLLCAICLICGDRPDLQEPQKVESLQEPLVEALRCYTRKRRPENPT
VFPKLIMKITDLRCIGFKGADRMVSIKNQVPQSCVPPLMKEMLVNEDEAD
Nucleotide sequence
Length: 1,583
>Moocci.CG.ELv1_2.S436781.g13630.01.t
ACTTGATGTTTTTACAGAGTATTTGCTTAGTTAAATTATATCGCAATTAGTAATTATTAT
TAACGTCGCCATGAACATGGTCGCGTTCCAAGAGCAGTGGCGCAGTCGAATGAACGGGAT
TCTGACCGATATGTTTTACAACCAGCAAAACAACGGCATGATGATGGTGGACCATCCCGT
CCCCCAGATGCAGGGATCTATGGGAAACCACCCGATGGCTATGCACTACCATCAGCCCCA
ACAAATGGCGCACCCACATCAGGGGTACCATTACCAAGCCAATCATCACCTGTCCCCCAA
CTCCATGGTCCACTCCCACGCCTTCCAGGGTCAGCCGAGATGGGACTACTCGCGAACCTC
ACCAGACAGCACTGGGTTGTCGTCAGCGGGAAGCAACACATCCGGGTCAGAGTCCGACCA
CCTGGCACCATCACCCCCTTCACCCCCGCCTCCCCCCAGGACTTACAAACCATGCTTCGT
CTGTGCCGTCCGAAACGACCGCAACAAAAAGCGCGGGAAAGAGAAGGACACCAAGAACGG
CGACGGTAGCGCCACAGAGACGATAGTCATCGCCCCGGAAATCCAGGCGACAATCGACGC
GGTGAAGAAGGCGCAGGAGGAAACCTTTCCGAAGATGGACACGCTGGATAAATACGCACC
GTTCCTTCGAATCTGCACCCGGTTCGATCCCAAGTCGGACACGATGACATTCTCGGACGG
TCTCGTGCTGAGCAGGAAGCAGCTTCACGACTGCGCGTTCGGACCGATGACGGAGCAGGT
GTTCGGGTTCGCGGAGACGCTCGTTCCGCTCGAGATCGACCACACGGAGGGTGGACTGCT
CTGCGCCATCTGTCTCATCTGCGGCGACCGGCCCGACCTCCAAGAGCCACAAAAAGTGGA
GTCACTTCAGGAGCCCCTCGTGGAGGCGCTTCGTTGCTACACCCGGAAGCGCCGCCCCGA
GAATCCGACAGTGTTTCCGAAGTTGATCATGAAGATAACAGACCTCCGGTGCATCGGATT
CAAAGGTGCCGACCGCATGGTGTCAATAAAGAACCAAGTACCGCAGAGCTGCGTCCCTCC
CCTCATGAAGGAAATGTTGGTTAACGAGGACGAGGCCGATTAAACTGATGACGCTATCCC
ACCCACAGCTCGCTGGCATCAGCTAGCGTTCGCGTTTACTGTGAAAAACAGCGAAGCTAC
GGAAGAATTTCGCAGCGATTTTATTACATTAGCTAAAGCTAAAAATGAGCGCCCCGCTAA
ATTGGGGCGGTCGAAGTTGCGTTTCTTTATCCGTTATTTTATTCNNNNNNATTCAATAGT
ATTGTTTAAATTNNNNNNNNNNTATTTGCGTGAAGCCTGGTCACGTGACAACGCAATATT
TTGGCACTAACTAACCTTTGACCTTTACGCTGTGTTATTTTAGAGCAAAATGTTTCCAAT
ATTCAAACCGGATCAACGATAACTCAAAGTATTTCTGTAACTGACTTAAAAATGTTTCTT
TATAGTTTTTTTTTCAATATAATAAAATTATTATCGCATTTAATCTTATAATTATTGCAT
TTTACTAAATACACACTTTGCCC
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[165-316] 1.5E-9 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[198-344] 3.28E-38 |
| PRINTS |
Nuc_orph_rcpt (IPR003070) - T[204-224] 1.6E-5 - T[273-290] 1.6E-5 - T[304-324] 1.6E-5 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[226-325] 1.7E-9 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[247-262] 3.8E-7 - T[304-321] 3.8E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 58.683 % | 201 | 1.39E-60 |
| RARG_HUMAN | 53.191 % | 177 | 6.6E-52 |
| RARA_HUMAN | 41.697 % | 202 | 2.53E-61 |