- Transcript 'Boleac.CG.SB_v3.S297...' >
- Transcript 'Moocci.CG.ELv1_2.S46...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S460407.g15193.01.t
Possible name(s)
COL12A1; MATN2; SELP
Gene model
Location
S460407 [26,273 / 33,567]
Amino acid sequence
Length: 809
>Moocci.CG.ELv1_2.S460407.g15193.01.p
MVQLRLSLPPNVFMKDGYSLPKTITTKSGNKSSLQNQPMPVEGISELELLNHHATNLTWL
IKVPDSVRDNGQESFHVVVRDDTAEDIVTSEVIPSSQRRFTVTGLTPENYYTLTVKAEND
EHFSVSMQSEPVRTVSRCYGCLNAMSKEECEQIIECMPDDRGCFVELRTRHVSNTNSFLK
KFRATMRCKQVRACDNNENQNLQHQCDPDNRRHNVDPPEVCRCCCEGDLCNGPGSTCGKL
LGWLDPFRDPENPAFRPAISCPEINAPRQGTIECTRGKDANSNRGMKCSFKCGKGFYNFG
IKEVECLDNGTWSHPVPKCIPEKMHLMPWGRDCVSNDIVTIENTQPCKEIPAKPGMHLSC
NRGSKPNSLCGVNCRPGYQLLGPEQLKCERDGRWSENPASLVCMEESTYKLSNVPNVLHG
PKIECRPNQCVNDGRCVDKINGFQCICGPGYYGVHCERKRTCIPLKKPLNGEVECTHGSE
VNSRCRITCYEGYSKHGPTYTRCTEAGTWSGGEDSTLCVINTCPVPPQTLVNGGKTDCSG
FNVGDTCEFFCPTGLRPAGGATNITCKPNSKWSAKVPCCDLPCPPYTKVDLLLVLDSSSS
VGRKSWKELIKFTITLLDNFVIGPEDMHVGVLRYNRKVDKKNEILLADYKSPSDLKDKIK
KIPYNGYGTLTGQALWHAYNHSMMVPGNRPGVPDVVLVITDGLAQDNVIKPATHLRNNGV
KFKALPLKTNSKKTVEQNYVHMYVVGVINKRDKMNMRQLREIASGPEYLKIITDGYEALA
AQLTSVLTKDVCWMPCQFRYEQKLSPKID
Nucleotide sequence
Length: 2,430
>Moocci.CG.ELv1_2.S460407.g15193.01.t
ATGGTGCAATTACGTCTGTCGTTACCACCAAACGTATTTATGAAGGATGGTTATTCTCTG
CCAAAAACAATTACCACCAAAAGCGGAAATAAATCATCATTACAAAATCAACCAATGCCT
GTGGAAGGCATCAGCGAGCTGGAGCTATTGAACCACCATGCCACCAACCTGACATGGTTG
ATCAAGGTGCCTGACAGTGTCAGAGATAACGGACAAGAGAGCTTCCACGTCGTTGTGAGA
GATGACACTGCTGAGGATATCGTCACAAGTGAAGTTATTCCAAGCAGCCAACGAAGATTC
ACTGTAACTGGTTTGACGCCGGAAAATTATTACACGCTCACTGTAAAAGCCGAAAATGAT
GAACACTTTTCAGTCAGCATGCAGTCGGAACCAGTCAGAACCGTAAGTCGTTGCTACGGA
TGTTTGAACGCGATGTCAAAAGAAGAGTGCGAACAGATAATAGAATGCATGCCAGATGAC
AGAGGATGTTTTGTGGAGTTGAGAACACGACACGTCAGCAACACCAACAGCTTCCTGAAG
AAGTTTAGAGCCACGATGAGATGCAAGCAAGTTCGAGCTTGTGACAACAATGAAAATCAG
AATCTTCAGCACCAATGCGACCCAGACAATCGTCGTCACAACGTTGATCCTCCAGAAGTC
TGTAGATGTTGCTGCGAAGGGGACTTGTGCAACGGCCCCGGATCCACATGCGGTAAACTC
CTCGGATGGCTCGACCCATTCCGTGACCCCGAAAACCCGGCCTTCAGACCAGCCATTTCA
TGTCCAGAAATCAACGCACCAAGACAAGGAACAATCGAATGTACCAGAGGCAAAGACGCC
AACAGCAACAGAGGAATGAAGTGCTCCTTCAAGTGTGGAAAAGGATTTTACAACTTTGGA
ATCAAAGAAGTAGAATGTCTGGATAACGGAACCTGGAGTCATCCGGTGCCAAAATGTATT
CCTGAAAAAATGCATTTAATGCCATGGGGAAGAGATTGTGTCTCTAACGACATCGTCACC
ATCGAAAACACTCAACCCTGCAAAGAAATTCCAGCCAAACCCGGTATGCATTTATCCTGC
AACAGGGGAAGCAAACCCAACTCATTGTGTGGAGTTAACTGCAGACCAGGATACCAACTT
CTCGGGCCTGAACAACTTAAATGTGAAAGAGATGGAAGGTGGAGCGAGAATCCAGCCAGC
TTGGTCTGCATGGAGGAAAGTACGTATAAATTATCAAATGTCCCTAATGTACTGCACGGC
CCCAAAATTGAATGCAGACCAAACCAATGTGTAAACGACGGTCGCTGTGTGGATAAAATC
AACGGATTCCAATGTATCTGTGGGCCGGGATATTACGGTGTCCACTGCGAAAGAAAACGA
ACTTGTATACCATTAAAGAAGCCATTGAATGGGGAAGTTGAATGTACCCATGGTTCAGAA
GTCAACTCCAGATGTCGAATTACTTGTTATGAGGGCTACTCCAAGCATGGTCCAACCTAC
ACTAGATGCACTGAGGCTGGAACATGGTCTGGAGGGGAGGATTCAACTCTTTGCGTCATC
AATACTTGCCCCGTCCCCCCACAAACACTGGTCAACGGGGGTAAGACTGACTGCAGTGGC
TTCAATGTTGGTGACACTTGCGAATTTTTCTGTCCAACTGGATTAAGACCAGCAGGTGGT
GCTACAAACATCACATGCAAACCAAACTCAAAATGGAGCGCCAAAGTTCCTTGTTGTGAT
CTTCCTTGTCCTCCCTACACTAAAGTTGATCTTCTTCTTGTGTTGGATTCATCGTCTTCC
GTCGGACGCAAGAGCTGGAAAGAGTTGATCAAATTTACAATTACGCTGTTGGACAACTTT
GTAATCGGACCAGAAGACATGCATGTTGGTGTGCTCCGGTATAACAGAAAGGTTGACAAA
AAGAACGAAATTCTTCTTGCTGATTATAAGAGCCCATCCGACTTGAAAGATAAAATTAAG
AAAATCCCATACAACGGATACGGAACCTTAACTGGGCAAGCACTTTGGCATGCGTACAAC
CACAGCATGATGGTGCCCGGTAACAGGCCAGGTGTCCCCGACGTAGTGCTCGTAATTACG
GACGGTTTGGCGCAAGACAACGTTATCAAACCGGCCACTCATTTGCGAAATAATGGAGTA
AAGTTTAAAGCCCTACCATTGAAAACAAATAGTAAAAAAACAGTTGAGCAAAACTATGTC
CATATGTACGTTGTTGGCGTAATAAACAAGCGAGACAAGATGAACATGAGGCAACTAAGA
GAGATAGCTTCCGGGCCGGAATACCTTAAGATTATCACGGACGGATACGAAGCTCTTGCA
GCCCAACTTACGTCAGTATTAACGAAAGATGTCTGCTGGATGCCGTGCCAGTTCAGATAC
GAACAAAAACTAAGCCCAAAAATTGACTAA
| SUPERFAMILY |
FN3_sf (IPR036116) - T[35-129] 8.76E-8 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[37-137] 11.495 |
| CDD |
FN3_dom (IPR003961) - T[38-134] 3.6443E-9 |
| Gene3D |
Ig-like_fold (IPR013783) - T[39-138] 4.7E-8 |
| ProSitePatterns |
CD59_antigen_CS (IPR018363) - T[137-188] . |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[259-320] 7.64E-11 - T[346-398] 3.34E-7 - T[459-511] 6.95E-9 - T[523-586] 1.17E-7 |
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[259-321] 9.39 - T[345-405] 8.789 - T[460-520] 8.044 - T[521-581] 9.411 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[261-319] 1.5E-7 - T[347-397] 9.5E-5 - T[462-513] 2.9E-5 - T[523-579] 1.6E-4 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[261-320] 1.97071E-7 - T[347-398] 3.85863E-6 - T[462-511] 3.90748E-8 - T[523-579] 7.23668E-6 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[261-319] 1.4E-8 - T[347-403] 0.0024 - T[462-518] 3.1E-5 - T[523-579] 5.8E-7 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[303-329] 7.27E-38 - T[574-781] 7.27E-38 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[421-457] 19.785 |
| SMART |
EGF-like_dom (IPR000742) - T[424-457] 1.3E-5 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[424-457] 3.3E-4 |
| Pfam |
EGF-like_dom (IPR000742) - T[425-454] 1.2E-5 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[436-447] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[445-456] . - T[445-456] . |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[587-797] 2.2E-36 |
| SMART |
VWF_A (IPR002035) - T[588-784] 9.5E-21 |
| Pfam |
VWF_A (IPR002035) - T[590-769] 7.1E-28 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[590-791] 22.792 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LYAM3_HUMAN | 28.286 % | 104 | 4.83E-23 |
| LYAM2_HUMAN | 24.292 % | 87.4 | 1.04E-17 |
| COCA1_HUMAN | 39.597 % | 100 | 2.18E-21 |