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  1. Transcript 'Moocci.CG.ELv1_2.S46...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S461892.g15327.01.t

Possible name(s)

SMCHD1

Location

S461892 [8,784 / 13,133]

Sequences

Amino acid sequence

Length: 834

>Moocci.CG.ELv1_2.S461892.g15327.01.p
MEVLGWPSFSQPVVIASGSKVPDNIQIQLLDGWGNKSFQKGVRVVMSKDQGIKISPTLSP
LVTNGEGYAKFSKFSVFGKRGEYSIQPRAVFNRTSIEGPKLKLSVLPNTETPVTLKVQFD
KEIKSVHAGSFWPEFKVKVLTEEGECVAAPVHLCMAIWKCSGKKDRCIPGNAELHRIYLI
EPDIALFENIEAPKTPGMYSICFRLTDSETSHNTLLISPYYKYEIVAALPHCLSPATNPG
TPTVSNAKAIANRTLIRNLKLKLKDKYDNTCSHEYCGTVKLTIELATESLKSNAIPLFEG
KCKTLIIPLRNSSATLQNICIKENSPGTDATEYCLRCEVTSPQIPEPLPPYNLCFMFYND
VNTQIQMAALSKQSDSLKKDIESYESLFSLHQTLIDELKKTKSNLEKKKADIIKDIRKTN
LSLSNKLDIEDIKELINESISEQNKLALKPRRKCNIKEYPDKGPDILGKIGHLACVEDED
LAKVLSWHMMGDLDCLVTLTTKKAREVYSCTGGMQQVLPFDSIYKKNIDENRPLPHKRMA
EKCDSPSGNPLYAKDALIFPKSPETCKVIFGMLIGDTIIMDDLESANEYRKKVVKYTYCP
TILTRNGERIRSNGKFGGSQNKIYSIDQLKGCVFGEPVHSEHKKYSSRINLLRQLKNLLI
EYNNACDELECQKQTLQTSEMLQKRKEHQDAVNKLKEFEKKIGMKSSSNDKAMNNSRKHQ
TDQIPQDVLNTLTAIEHRVVAVENLFSQRDAPVRPPKISSPGVPVSSDGIYEKVDIPPIV
PKRESGRFYRTEDLESMRDDLKQLSEYINGKKFKKSGAQDSLDRLQSWLKQNKN

Nucleotide sequence

Length: 2,505

>Moocci.CG.ELv1_2.S461892.g15327.01.t
ATGGAGGTATTGGGCTGGCCCTCTTTTTCACAACCGGTTGTTATTGCAAGTGGTTCAAAA
GTACCAGATAATATTCAGATACAATTACTGGATGGCTGGGGAAATAAATCATTTCAAAAA
GGTGTTAGAGTAGTAATGAGTAAAGATCAAGGTATCAAGATATCTCCCACATTATCTCCA
TTGGTGACAAATGGTGAAGGTTATGCTAAATTCAGTAAATTTTCTGTTTTTGGGAAACGT
GGTGAGTATAGCATCCAACCTAGGGCTGTTTTTAATCGGACCTCGATTGAAGGTCCAAAG
CTAAAGTTATCAGTTTTACCTAACACTGAAACTCCAGTTACGCTTAAAGTACAATTTGAC
AAGGAAATTAAATCTGTACATGCTGGTTCATTCTGGCCTGAATTTAAAGTAAAAGTATTG
ACAGAAGAGGGTGAATGTGTTGCTGCACCTGTGCATTTATGTATGGCAATATGGAAATGT
TCTGGTAAAAAGGATAGGTGTATTCCTGGTAATGCGGAATTACACAGAATTTATTTGATA
GAACCTGATATTGCTTTATTTGAAAATATAGAAGCCCCAAAGACGCCTGGTATGTATAGT
ATTTGTTTTCGTTTGACGGATTCTGAAACATCTCACAATACATTATTAATAAGTCCGTAC
TACAAATACGAAATTGTTGCAGCATTACCTCATTGTTTGTCACCTGCTACTAATCCTGGC
ACACCAACTGTTTCAAATGCTAAGGCAATTGCTAACAGAACATTGATAAGAAACTTAAAA
TTAAAACTTAAAGACAAATATGACAATACATGTAGCCATGAATACTGTGGCACAGTTAAA
CTAACAATTGAACTTGCAACAGAAAGTTTAAAATCCAATGCCATTCCATTGTTTGAAGGT
AAATGTAAGACGTTGATTATTCCATTAAGAAATAGTAGTGCCACATTGCAGAATATTTGC
ATTAAGGAAAATTCCCCAGGTACAGATGCAACAGAATATTGCTTAAGATGTGAAGTGACA
TCTCCTCAAATTCCAGAACCTTTACCTCCCTATAACTTGTGCTTTATGTTTTATAATGAT
GTCAATACACAAATACAAATGGCAGCATTGTCAAAACAAAGTGACTCATTAAAAAAAGAT
ATAGAGTCATATGAAAGTTTGTTTTCTTTGCACCAAACTTTAATTGATGAACTAAAAAAA
ACAAAATCAAACCTCGAAAAGAAAAAAGCTGATATAATAAAAGATATAAGAAAGACTAAT
CTTTCATTATCTAACAAACTTGACATTGAAGATATTAAAGAATTAATTAATGAAAGTATT
TCAGAACAAAACAAATTAGCATTAAAACCTCGGCGAAAATGCAATATAAAGGAATATCCA
GATAAAGGACCTGATATTCTGGGAAAAATTGGACATCTTGCATGTGTAGAAGATGAAGAC
CTTGCTAAAGTTCTGTCCTGGCATATGATGGGTGATTTAGATTGCTTGGTAACATTAACA
ACTAAAAAGGCAAGGGAAGTCTACAGCTGTACTGGAGGTATGCAGCAGGTTCTTCCATTT
GATAGTATATATAAAAAAAATATTGATGAAAACCGTCCTTTGCCTCATAAACGCATGGCT
GAAAAGTGTGATTCTCCCTCTGGTAATCCTTTATATGCTAAAGATGCACTTATTTTTCCA
AAGTCACCTGAAACTTGTAAGGTTATATTTGGAATGCTTATTGGAGATACTATTATTATG
GATGATTTAGAATCAGCAAATGAATACAGAAAAAAGGTTGTCAAATATACTTATTGCCCC
ACGATTCTTACTCGTAACGGTGAACGTATAAGAAGTAATGGAAAGTTTGGAGGAAGTCAA
AATAAAATTTATTCCATTGATCAACTTAAAGGTTGTGTATTTGGTGAACCAGTGCACTCT
GAACATAAAAAATACAGCAGTAGAATAAATCTTCTTCGTCAACTTAAAAACCTTTTAATT
GAATACAATAATGCCTGTGATGAACTGGAATGTCAAAAACAAACTTTACAAACAAGTGAA
ATGTTACAAAAGCGGAAAGAACATCAAGATGCTGTTAACAAATTAAAAGAGTTTGAAAAA
AAGATCGGAATGAAATCATCATCAAACGATAAGGCTATGAATAATAGTAGAAAACATCAA
ACTGACCAAATACCCCAAGATGTGTTGAATACACTGACAGCAATAGAACATCGTGTAGTG
GCAGTAGAGAACCTTTTTTCTCAACGCGATGCTCCAGTACGACCTCCGAAAATAAGTAGT
CCTGGTGTGCCTGTATCCTCCGACGGAATCTACGAAAAGGTTGATATTCCTCCTATTGTT
CCCAAACGTGAAAGTGGAAGATTTTACAGAACGGAAGATTTGGAAAGCATGAGAGATGAT
TTGAAACAGTTATCTGAATACATTAATGGGAAAAAATTTAAGAAGTCAGGCGCTCAAGAT
AGCTTAGATCGATTGCAAAGTTGGTTAAAACAAAACAAAAACTAG

InterProScan

SUPERFAMILY
SMC_hinge_sf (IPR036277) - T[436-624] 1.31E-13
SMART
SMC_hinge (IPR010935) - T[464-590] 2.8E-4
Pfam
SMC_hinge (IPR010935) - T[465-589] 2.4E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMHD1_HUMAN 38.767 % 509 4.26E-159