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TRANSCRIPT CARD

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  1. Region 'REG00000854'
  2. Transcript 'Moocci.CG.ELv1_2.S46...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S461892.g15328.01.t

Possible name(s)

SMCHD1

Location

S461892 [13,392 / 17,109]

Sequences

Amino acid sequence

Length: 1,239

>Moocci.CG.ELv1_2.S461892.g15328.01.p
MHVDKDDPEDAHVFVFDQRFDKTPCQKIHIGGIFSFVEFYDTILERFCIEKENDIIITTT
NRSVINEDTYLQLIESGDTLYILNSIDQKLLGPVLEKIDFQPHYDTLIKSGVYEYYASEG
NTNPLPFAFAELIDNALAATAKNTGSRNISLNMFFDDTLSQYVMSVQDNGVGMTPRQLNN
WAVYRLSKFNRKDRHNIKDNLFEDRYEQDESTISKSLNSDISWFGVGGKQAIFFIGNAVR
VITRSKGEYDVHEFTLSKDNFKQKEANKEKIYSGYIKNRSSSDNTHIPKMEKVTQDLIIK
EKYLPNNSGFTNIIISGIDAQHIPYIRHGFNKWTRQLAHIYHYYIHGTEGNTAMSKQRKN
IGATDVNIFVTMYEQGVEVESVSLRDIEDDQETQFIRTACDTFEFEISNQENAKIEGIMR
YHPFLYDKETYPIIDNNVNDSDEESIPDDSNYQTRGQKPIFQCFWNGRLIPYTFVQDFDW
CRSPRKRGLLPTECYERISGCLFTNDKFRVSTNKLTFIDLDAKLKDSEVHFYRVILGEKQ
SCNLQKQFFEWLKECHEKYDKQIKFLNYIDHILHATSRQPRMLWTSFEAIEWEGKLYKTG
QLVRTCRTTSPMFGRIQRFLLLGQHEGDTFAVGGEVEIVREPLMFYGEIFHIPLSKLDRN
ASKATIQNQIKNESSNMPTKIKIKWKDSNKIEDKSKIQAGSDIGEMIIEVITNKGESVDK
LLTNSGSRKLLVEQKIYMLCAANSGRKPSKPREIASHVSSFPYVFESVNNIHTMGDYLID
LQVLFANTGSSTLGDGKELPSRSINFSVTEAPPCKFMVGVLESPLCVGKPFDLPLDLQDE
HNHPTKAIQCEKPILKSSGLDLSYDDYIIKDNSIIIKKVVALGEVPSQIGQNFSMTVTIP
NLKQKTQTMKIRLLPGAPKELRIQSISCNDVEVEMNEMDKYPIENHCKLAMEVALVDIAL
NPTMPGKGKLQAKFSGSNGLPTITCEIKKSSMIANLSGKFNIKKLRKNLSIKGKISLVGR
RDISPVDLHLLVQPSVEPYLICVYYQDPYSEGESTMKLKSGQDIFWHAGEAICNLTFELF
DEAMRKVDITEQISELIKVNWISESEISDLSLKQGDLPDVVVPLNTKDSKFCQIVYSGTS
NTSNKSVQFSFYVKPVAGEPETLKCEVVGGRETEIGVMRTSPILVSICDKHHNKLLIRDT
QLNNIKISCPGLDIALISKMKEEHKIVISNIQFNEGPLG

Nucleotide sequence

Length: 3,717

>Moocci.CG.ELv1_2.S461892.g15328.01.t
ATGCATGTTGATAAGGATGACCCAGAAGATGCTCATGTATTTGTTTTTGATCAAAGATTT
GATAAAACGCCTTGCCAGAAAATTCACATTGGTGGCATTTTCAGCTTTGTTGAGTTTTAT
GATACCATTTTGGAAAGGTTTTGCATAGAAAAGGAAAATGATATCATTATAACAACTACC
AACCGCTCAGTCATCAATGAAGATACATATTTACAATTAATAGAATCAGGTGATACATTG
TATATTTTAAATTCAATTGACCAAAAACTTCTAGGACCAGTGTTAGAAAAAATAGACTTT
CAGCCTCATTATGATACATTAATAAAAAGTGGAGTGTATGAATATTATGCAAGTGAAGGA
AACACAAACCCATTACCTTTTGCCTTTGCTGAGTTAATAGACAATGCTTTAGCAGCTACA
GCCAAGAACACTGGGAGTAGAAATATATCTTTAAACATGTTTTTTGATGATACTCTTTCA
CAATATGTTATGTCAGTGCAGGACAACGGAGTAGGGATGACACCAAGACAATTAAATAAC
TGGGCTGTTTATAGGCTGTCAAAGTTCAATCGTAAAGATAGGCACAATATCAAAGACAAT
CTGTTTGAAGACCGATATGAACAAGATGAAAGCACCATTTCTAAATCTTTAAATTCAGAT
ATTTCATGGTTTGGGGTTGGTGGGAAACAAGCAATATTTTTCATTGGTAATGCTGTTAGA
GTTATTACAAGGTCTAAGGGTGAGTATGATGTTCATGAGTTTACACTTTCAAAAGATAAT
TTTAAGCAAAAAGAAGCAAATAAAGAAAAAATTTATAGTGGTTATATTAAAAACCGTTCT
TCCTCAGATAATACGCATATACCAAAAATGGAAAAAGTTACTCAAGATTTAATTATTAAA
GAAAAGTATCTTCCAAACAATTCTGGGTTTACAAACATTATTATTAGTGGCATCGATGCC
CAACATATTCCTTATATTAGGCATGGTTTTAATAAATGGACTCGTCAACTTGCACATATT
TACCATTATTATATTCATGGAACTGAAGGCAATACTGCCATGTCAAAGCAAAGGAAAAAC
ATAGGAGCGACCGATGTAAATATTTTTGTAACTATGTATGAACAAGGAGTAGAAGTGGAA
TCTGTTTCTTTAAGGGATATTGAAGATGACCAGGAAACGCAGTTTATTCGTACGGCATGT
GATACTTTTGAATTTGAAATATCTAATCAGGAAAATGCGAAAATCGAAGGTATTATGCGT
TATCATCCATTTCTTTATGACAAAGAAACCTACCCTATTATTGATAATAATGTTAATGAT
AGTGATGAAGAAAGTATACCCGATGACAGTAATTATCAAACTCGTGGTCAAAAGCCAATA
TTTCAATGTTTTTGGAATGGACGCTTGATTCCATATACGTTTGTACAAGACTTCGATTGG
TGTAGAAGTCCACGTAAAAGAGGGTTACTTCCAACCGAATGTTATGAACGAATATCTGGT
TGCTTATTTACTAACGATAAGTTTAGGGTATCTACAAATAAACTAACATTTATTGACTTG
GATGCTAAATTAAAAGATTCAGAGGTTCATTTCTATAGAGTAATATTGGGAGAAAAACAA
AGTTGTAATTTACAAAAGCAGTTTTTTGAATGGCTTAAAGAATGCCATGAAAAATATGAT
AAACAGATAAAGTTTTTAAACTATATTGACCATATTCTGCATGCAACTAGCCGTCAACCA
AGGATGTTGTGGACATCATTTGAAGCCATTGAATGGGAAGGAAAGTTATATAAAACAGGT
CAGTTAGTCAGAACTTGTAGAACTACATCTCCAATGTTTGGAAGAATTCAAAGATTTTTG
TTGCTCGGTCAACATGAAGGAGATACCTTTGCTGTGGGTGGAGAGGTAGAAATAGTCCGT
GAGCCCTTGATGTTTTATGGTGAGATATTCCATATACCGCTTTCAAAACTTGATAGAAAT
GCTTCTAAAGCAACAATACAAAATCAGATTAAAAATGAGTCTTCAAATATGCCAACTAAA
ATAAAAATAAAATGGAAAGATTCAAATAAAATTGAAGATAAAAGTAAAATTCAAGCTGGT
TCCGATATTGGTGAAATGATTATAGAAGTTATAACAAACAAAGGTGAGTCTGTTGATAAG
TTACTAACGAATTCTGGATCAAGAAAGTTATTGGTAGAACAAAAAATATATATGTTATGT
GCTGCAAATTCTGGAAGAAAACCTTCAAAACCAAGAGAAATCGCTAGTCATGTTTCCAGT
TTTCCGTATGTTTTTGAATCAGTTAATAATATACATACTATGGGAGATTACCTGATAGAT
CTTCAGGTTTTATTTGCCAATACCGGTAGCTCTACTTTGGGAGATGGTAAGGAACTTCCA
AGTCGAAGCATAAATTTTTCAGTTACTGAAGCTCCACCCTGTAAGTTTATGGTGGGTGTT
TTGGAATCACCACTTTGTGTTGGAAAACCATTTGATCTACCACTTGACCTACAGGATGAA
CATAACCATCCTACAAAAGCTATTCAGTGTGAAAAACCTATTTTAAAATCAAGTGGTTTA
GATCTTTCATATGATGATTATATCATAAAAGATAATTCTATTATAATAAAAAAAGTTGTG
GCACTTGGAGAAGTGCCTTCTCAAATAGGACAAAACTTTTCTATGACCGTCACCATTCCA
AACTTGAAACAAAAAACTCAAACTATGAAAATTAGATTACTCCCTGGTGCTCCAAAAGAA
CTAAGAATTCAATCCATTTCCTGCAATGATGTTGAAGTTGAGATGAATGAAATGGATAAA
TATCCTATAGAAAATCATTGCAAACTTGCTATGGAAGTTGCTTTGGTAGATATTGCATTA
AATCCCACAATGCCTGGTAAAGGTAAATTACAGGCCAAATTTTCAGGAAGTAATGGATTG
CCTACTATTACATGTGAAATTAAAAAATCTTCAATGATTGCAAACCTTTCTGGAAAGTTT
AACATAAAAAAGCTCAGAAAAAATCTTTCTATTAAAGGTAAAATATCACTAGTTGGGCGT
AGGGACATTTCTCCAGTTGATTTGCATCTTTTAGTACAACCGTCTGTTGAACCATATTTA
ATATGTGTATATTATCAAGATCCATATTCTGAAGGAGAATCAACTATGAAGTTAAAATCT
GGCCAAGATATATTTTGGCATGCAGGAGAAGCTATTTGTAATTTAACATTTGAGCTTTTT
GATGAAGCTATGCGAAAAGTTGACATTACAGAACAAATATCTGAACTTATTAAAGTAAAC
TGGATTAGTGAATCGGAAATTTCAGATTTAAGTTTAAAACAAGGAGATCTTCCGGATGTT
GTTGTTCCTTTAAATACAAAAGATTCCAAGTTTTGCCAAATTGTATATTCGGGAACTAGC
AACACAAGCAATAAATCCGTTCAATTTTCATTTTATGTTAAACCCGTAGCTGGAGAACCA
GAAACATTAAAATGTGAAGTGGTTGGTGGAAGAGAAACTGAAATAGGAGTTATGCGAACA
AGTCCAATCCTTGTTTCAATTTGTGATAAGCACCACAATAAGCTTTTGATAAGAGATACA
CAATTAAATAATATTAAAATTTCATGCCCCGGCCTTGATATTGCACTGATTTCTAAAATG
AAAGAAGAGCATAAAATTGTCATTAGCAATATTCAGTTCAATGAAGGTCCATTAGGA

InterProScan

SUPERFAMILY
HATPase_C_sf (IPR036890) - T[98-265] 1.31E-10
Gene3D
HATPase_C_sf (IPR036890) - T[113-308] 4.1E-13
CDD
HATPase_C (IPR003594) - T[128-180] 0.00102952

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMHD1_HUMAN 40.095 % 936 0