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- Transcript 'Moocci.CG.ELv1_2.S47...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S473553.g16246.02.t
Possible name(s)
SMC1A; SMC1B; SMC4
Gene model
Location
S473553 [1,491 / 5,595]
Amino acid sequence
Length: 1,153
>Moocci.CG.ELv1_2.S473553.g16246.02.p
MDEDDNNTEMEIESSESDKIENLDQENKDCRPEEMEDEKIPCAQASEQQKEDNVNANSGL
EKQIDEVDKTSSRKDISENTETEDKEKNVDQNQDAEKEISVLIHNSMNHKNCTSCTVEVY
FQKIIDKEGDNFEVIPKTVEKDRDELEPHRNEAIDYLKEQNLIVSLQNSLIQFYLRNLTE
EETVHIAKKEEITKNMSSYKETLNKLLEEKKVKTKHLKKIARAFEKRETLCQEKKDKMGE
LEKLNVKIFEDKKHSRNKAKELKSKLDKETKKLAETEKVPEQNNKQMEKLTSQLDGLSKE
KDKCEQELNAAMQTINKETKELQSQKDEKEHELMLLMKDVNESKQKLDVAKAELEIYTSN
HDKAIATLEEVNGKIHSLNQKVKELSVEKQKLTKILPETESKRKVATNELKDLKDEERKL
ESQLKKDKANLADAEHSVRSAKSHGRVMDFLMQLKDSGKLPGIYGRLGDLGAIDEKYDVA
ISSCCPALENMLVDNIETAQECVKALKKNNVGKATFIALDKMNKYHNKLQAKPKVSLARI
VDLIQVKEESFRLAFYHALRDTLVANDLPSASKVAYGKERRWRVVTLKGELIDTSGTMTG
GGNKIIKGRMGSKCISQETISIDAINKMRKNTQNLEIKFRDLRGNVAIKEEEIEKLHRQH
HIHECKLSQVEMEHKGLQSQLKQLLAQKPDCEEAVKKTKPDPSKQKAMQVTMDKIEKVYN
SASKKASKVEEEKDKLHQHILDISGHKLKPAKDAVKKATSDLEGAKKKITKLKVGIKTSE
RNLEKCKASIEATKNEIIENDKTLEELEKQWAQLEVDGQKLLEETEVVEKEKEEISAALQ
ECQVFLQESEKKEREVKESMKEFTHALEATEAAIIEHKEKVARWKDKLKHLKLSKIDGKE
PPQLQVLTNEELDELDEKMIKTQISVKEHELAKKEPNMAAIEEYNSKDALYIQRVDELDN
VTKKRNKHRMQHDELRKRRLREFTSGFMIITNKLKEMYQMITQGGDAELEFVDSLDPFSE
GIVFSVRPPKKSWKNICNLSGGEKTLSSLALVFALHHYRPTPLYVMDEIDAALDFKNVSI
IAIYIKERTKNAQFIIISLRNNMFELADRLVGIYKTDNCTKSVNVEPKLMEKRMLETKSV
NKKTESMTASISA
Nucleotide sequence
Length: 3,462
>Moocci.CG.ELv1_2.S473553.g16246.02.t
ATGGATGAAGATGATAACAATACTGAAATGGAAATTGAATCAAGTGAATCAGATAAAATA
GAAAATCTTGATCAAGAAAACAAAGATTGCAGACCTGAGGAAATGGAAGATGAAAAAATA
CCTTGTGCTCAAGCATCTGAACAACAAAAGGAAGATAATGTAAATGCAAATTCAGGTTTA
GAAAAACAAATTGATGAAGTTGATAAAACGTCTTCAAGGAAAGACATTTCAGAAAATACG
GAAACAGAAGACAAAGAAAAAAATGTTGATCAAAATCAAGATGCAGAAAAGGAGATTTCT
GTTCTTATACATAATAGCATGAATCACAAAAATTGTACAAGTTGCACTGTAGAAGTATAC
TTTCAAAAGATAATTGATAAGGAAGGGGATAATTTTGAAGTAATTCCTAAGACGGTCGAA
AAGGATAGAGATGAGTTGGAACCTCATAGAAATGAAGCTATTGATTATTTGAAAGAACAA
AATCTCATTGTAAGTCTACAAAATAGTTTAATCCAATTTTATTTGAGAAATTTGACAGAA
GAAGAAACTGTTCATATTGCCAAAAAAGAAGAAATTACTAAAAATATGTCTTCATACAAA
GAAACTTTGAATAAATTATTGGAGGAAAAGAAGGTGAAAACAAAGCATTTAAAAAAGATT
GCAAGGGCATTTGAAAAACGGGAAACTTTATGTCAAGAAAAAAAAGATAAAATGGGAGAA
CTAGAAAAACTAAACGTTAAAATTTTTGAAGATAAAAAACACTCTCGGAATAAAGCTAAA
GAGTTAAAATCTAAACTTGACAAAGAAACAAAAAAATTAGCAGAAACAGAAAAAGTACCA
GAACAAAATAACAAACAAATGGAAAAACTTACAAGTCAGCTTGATGGTTTGAGTAAAGAA
AAAGATAAATGTGAACAGGAGCTAAATGCTGCAATGCAAACCATAAACAAAGAAACCAAG
GAACTGCAAAGTCAAAAGGATGAAAAAGAACATGAATTGATGCTTCTCATGAAGGATGTA
AATGAGTCAAAACAAAAACTAGATGTTGCTAAAGCTGAGCTGGAGATATACACAAGTAAT
CATGATAAAGCAATCGCAACATTGGAGGAGGTAAATGGAAAAATTCACAGTTTAAATCAA
AAAGTCAAGGAATTATCAGTAGAAAAACAAAAGCTAACTAAGATTTTACCTGAAACTGAA
TCTAAAAGAAAAGTTGCAACAAATGAATTAAAAGATTTAAAAGACGAAGAACGAAAATTA
GAGTCCCAGTTAAAAAAGGATAAAGCGAACTTGGCTGATGCTGAACACTCAGTACGATCA
GCAAAGTCACATGGTAGAGTTATGGATTTTTTAATGCAACTTAAAGATTCTGGTAAGTTG
CCTGGTATTTATGGTAGGTTGGGGGATTTAGGCGCAATTGATGAAAAATACGATGTAGCC
ATTTCTTCCTGCTGTCCAGCACTTGAAAATATGTTAGTAGATAACATAGAAACAGCTCAG
GAATGTGTTAAAGCTTTAAAGAAAAACAATGTTGGTAAAGCTACATTTATTGCTTTGGAC
AAAATGAATAAATATCATAATAAATTACAAGCAAAACCTAAAGTGAGCCTTGCAAGAATA
GTGGATTTAATACAAGTTAAAGAAGAAAGTTTTCGTTTGGCTTTTTACCATGCCCTACGA
GATACTTTAGTTGCTAATGATTTACCCAGTGCTTCCAAGGTAGCATATGGCAAAGAAAGG
AGATGGAGAGTAGTTACACTTAAAGGGGAACTTATTGATACATCAGGAACTATGACTGGT
GGTGGAAATAAAATAATTAAAGGTAGAATGGGTTCTAAATGCATAAGTCAAGAAACCATT
TCTATTGATGCCATAAATAAAATGAGGAAAAATACTCAAAACCTAGAAATAAAGTTCCGT
GATCTCAGAGGTAATGTTGCAATAAAAGAAGAAGAAATTGAAAAGCTTCATCGTCAGCAC
CATATTCATGAATGTAAATTGAGTCAAGTTGAAATGGAACATAAAGGATTGCAATCTCAG
TTAAAACAACTTCTCGCACAAAAGCCTGATTGTGAAGAAGCTGTAAAGAAAACAAAACCA
GATCCAAGTAAACAAAAGGCCATGCAGGTTACCATGGACAAAATAGAAAAAGTGTATAAC
TCTGCAAGTAAAAAAGCTTCTAAAGTGGAAGAAGAAAAAGATAAACTTCACCAGCACATA
CTTGATATATCTGGCCATAAATTAAAGCCAGCAAAAGATGCTGTTAAGAAAGCAACTTCT
GATTTGGAAGGAGCTAAAAAGAAAATCACTAAACTGAAAGTGGGCATTAAAACTTCTGAG
AGAAATCTTGAGAAATGTAAAGCTTCCATTGAAGCTACTAAAAATGAAATAATTGAAAAT
GATAAGACATTGGAGGAATTAGAAAAACAATGGGCACAGCTGGAGGTAGATGGACAAAAA
CTTTTAGAAGAAACCGAGGTTGTTGAAAAAGAAAAGGAAGAAATTTCTGCTGCATTGCAA
GAGTGTCAAGTGTTTTTACAAGAATCTGAGAAGAAAGAAAGAGAAGTGAAAGAAAGTATG
AAAGAATTTACTCATGCTTTGGAAGCTACTGAAGCTGCAATTATAGAACACAAAGAAAAA
GTTGCAAGGTGGAAAGATAAACTAAAGCATCTAAAATTGTCAAAAATTGATGGAAAAGAA
CCACCGCAACTACAAGTTTTGACAAATGAAGAACTTGACGAGCTTGATGAAAAAATGATA
AAAACACAGATTTCTGTTAAAGAACACGAACTAGCAAAAAAAGAGCCTAACATGGCTGCC
ATTGAAGAATATAATTCAAAAGATGCTTTATATATTCAGAGAGTTGATGAACTCGATAAT
GTTACAAAGAAAAGAAACAAACATAGAATGCAGCATGATGAATTACGTAAACGACGTTTA
CGAGAATTTACGTCCGGTTTTATGATTATAACAAATAAGTTGAAAGAAATGTATCAAATG
ATTACTCAAGGTGGAGATGCTGAATTAGAATTTGTAGATTCTCTTGATCCATTTTCAGAA
GGAATAGTTTTCAGTGTCCGACCCCCCAAAAAATCATGGAAAAATATATGTAATCTTTCA
GGAGGGGAAAAAACACTTAGTTCCTTAGCGTTAGTATTTGCCCTACATCATTACAGACCT
ACACCATTATATGTAATGGATGAAATAGATGCTGCATTAGACTTTAAAAATGTTTCAATC
ATTGCAATTTATATAAAAGAAAGAACAAAAAATGCTCAGTTTATTATTATAAGTTTAAGA
AACAATATGTTTGAACTTGCAGATAGGCTGGTTGGAATTTACAAAACTGACAACTGTACA
AAAAGTGTGAATGTAGAGCCAAAACTTATGGAAAAAAGAATGTTAGAAACCAAGTCTGTG
AACAAAAAAACTGAAAGCATGACTGCTTCAATAAGTGCATAA
| PIRSF |
SMC (IPR024704) - T[95-138] 0.17 - T[133-1136] 4.1E-212 |
| Pfam |
RecF/RecN/SMC_N (IPR003395) - T[97-1121] 1.5E-24 |
| SUPERFAMILY |
SMC_hinge_sf (IPR036277) - T[420-611] 8.89E-46 |
| Pfam |
SMC_hinge (IPR010935) - T[461-574] 3.7E-22 |
| SMART |
SMC_hinge (IPR010935) - T[461-575] 3.2E-30 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[803-816] 9.63E-31 - T[930-1123] 9.63E-31 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SMC1A_HUMAN | 36.264 % | 129 | 2.99E-30 |
| SMC1B_HUMAN | 32.589 % | 129 | 3.74E-30 |
| SMC4_HUMAN | 44.088 % | 738 | 0 |