- Transcript 'Haaura.CG.MTP2014.S5...' >
- Transcript 'Moocci.CG.ELv1_2.S47...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S475518.g16444.01.t
Possible name(s)
FMR1; FXR1; FXR2
Gene model
Location
S475518 [68,740 / 71,778]
Amino acid sequence
Length: 592
>Moocci.CG.ELv1_2.S475518.g16444.01.p
MDARVVEVRGSNGAFYKAFLADVLPNGISVTFENNWQPERIMPFSEVRHPCEDISVENIE
FTENSEVEVHSRANDNEPCGWWKARIQMTKGDFFVIEYLSCTPKYTEIVTKERLRPINTN
PCYTPNTILKVSLPVPEELHAFCEKYIDAHKEFEKSTGAILVRYKNAGHTLDVIVSSDAA
RKRVAIVSDLHFRSLRTKLAMLQRVEEASKQLEMSQQRAESCIERFTLHEDLVGLAIGTG
GANIMAARKIPGVVDIVLKEDTHTFTVYGETKEAVMKAREMLEYKEDQVLVPRSFVGKVI
GKKGSTIQEMIDKSGVLRVRVVGDDEKEVSKNEEGMVPFIFVGTSECIRNAKAMLNYHVS
YLHDLEKLHMEQVTINQKIRKLDGSGGRSASQLSGTSGFNTQSDTDNGYRRQYAYNGSGR
GRGRGGMGRRDRRNDKDAENTTSEFSNISDTGSETGASTSTDTYAEGKPVKRQDYDARQG
YNSRYIPNSTAKAVKPIINNSHFTKNSFEVLENGDTSDNSVTSKVQANGEGLTNGTGSNV
QAKNKNKNRRNKNRNKKNANNEKNNIKDEVKPTANGDNGHLQNGNKTAPVST
Nucleotide sequence
Length: 2,885
>Moocci.CG.ELv1_2.S475518.g16444.01.t
AAGGAAATAGGCTAGGCTGATTAAATTTTTTTAATTATGGATGCTCGTGTTGTAGAGGTG
AGAGGTTCCAATGGTGCATTTTACAAAGCTTTTCTGGCAGATGTCCTTCCAAATGGCATT
TCGGTTACGTTTGAAAATAATTGGCAACCAGAACGTATAATGCCATTTAGTGAAGTTCGT
CATCCTTGTGAAGATATTAGTGTTGAAAATATTGAGTTCACTGAAAATTCTGAAGTTGAA
GTTCATTCTCGTGCTAACGATAATGAACCATGCGGGTGGTGGAAAGCAAGAATCCAAATG
ACAAAAGGAGATTTTTTTGTTATTGAATACCTCTCATGTACACCAAAGTACACTGAAATT
GTTACCAAAGAAAGACTTAGACCTATTAATACAAATCCATGTTATACTCCAAATACCATC
TTAAAAGTATCTTTGCCTGTTCCTGAAGAATTGCATGCTTTTTGTGAAAAGTACATCGAT
GCCCATAAAGAGTTTGAAAAGAGTACAGGTGCAATTTTAGTTCGTTATAAAAATGCTGGC
CATACTCTTGATGTCATAGTTTCGAGCGATGCTGCTCGAAAAAGAGTTGCTATTGTATCA
GATCTGCATTTTCGTAGTTTAAGAACCAAACTTGCAATGCTACAAAGAGTTGAAGAAGCA
TCAAAGCAACTGGAAATGTCACAGCAAAGAGCAGAGTCTTGCATTGAAAGATTTACATTA
CACGAAGACCTTGTTGGCCTGGCAATTGGTACCGGTGGAGCTAATATTATGGCAGCAAGA
AAGATACCGGGCGTAGTGGACATTGTGTTAAAAGAAGACACCCATACATTTACTGTATAT
GGTGAAACAAAAGAAGCTGTAATGAAAGCTCGAGAAATGTTAGAATATAAAGAAGACCAA
GTTTTAGTTCCAAGATCATTTGTTGGGAAGGTCATAGGCAAAAAAGGAAGCACAATACAA
GAGATGATAGATAAATCTGGAGTTTTGCGTGTTAGAGTTGTTGGTGACGATGAAAAAGAG
GTCAGTAAAAATGAAGAAGGAATGGTACCTTTTATATTTGTTGGTACTAGTGAATGTATT
AGAAATGCCAAAGCGATGCTTAATTACCATGTATCATATTTGCACGATCTTGAAAAATTG
CACATGGAACAGGTCACAATAAACCAAAAAATAAGAAAGCTTGATGGTTCTGGTGGGAGA
AGTGCATCTCAGTTATCAGGTACTTCTGGATTTAATACGCAAAGTGATACAGACAATGGG
TATCGTCGACAATATGCATATAATGGGTCAGGAAGAGGAAGAGGTAGAGGGGGCATGGGT
AGGCGTGATAGACGGAATGATAAAGATGCTGAAAATACTACATCTGAGTTTTCAAACATT
TCTGATACTGGGTCTGAAACAGGTGCTAGTACAAGTACTGATACATATGCTGAAGGAAAG
CCTGTGAAGAGACAAGACTATGATGCAAGGCAAGGTTATAATTCTCGATATATTCCAAAC
TCTACTGCCAAAGCAGTCAAGCCAATAATTAATAATTCTCATTTTACTAAAAATTCATTT
GAAGTTCTTGAAAATGGTGACACTTCAGATAACTCTGTTACTTCAAAGGTACAAGCAAAT
GGCGAAGGTTTAACTAATGGCACTGGAAGTAATGTCCAAGCAAAAAACAAAAATAAGAAT
CGCAGAAATAAAAATCGAAATAAGAAAAATGCTAATAATGAAAAAAATAATATAAAGGAT
GAAGTTAAACCAACAGCTAATGGTGACAATGGACATCTTCAAAATGGTAATAAGACTGCG
CCAGTTTCAACATAATGGTTATATATTTTTTTCATAAAGACTTAAATTATCAACTTCAGT
TTCTGTTAATTTTTAAGTGGAAATCAATGGGACTGTTTAACTGAAAATTTGTATTCCTTT
TTACTGTGGTCTATTTCTTAGTTTTGGTCATATTTAAACAATTTGATTTTTATTTTAATG
TATGGCAATAATTTATAGTTTTATACATAAATTAGTTGTGTAGCAAACTTTAAATATAAA
AGTTACAGTTTACTAAAAATACAAATTAGTGTAGTAAATTTTTGAATTTTAATATTTCAT
GTGTAACAACTCTATTTTTCTTATTTTTTAGTTGTGCCTGCATTTATAAATTAAATCGTA
TGTCGTAAAATATCGCATACACATTTTGCAATTTTTATACCACTGTTGTAAATTAGTGTT
CCTTTTTCTGCATGCCATGTTCAAATATAAAATGCATGAGAATTGTAGATGCTATTATTA
TCTACACAGTAATTTTGTTTGCAAATATCAACATATTATTCATTGTTGATAAAAGTGTTT
GGACCTGTTTATAAATACAATTTGTGTGATAACCTTATTATTCTACTGTGAATATTACAT
GCATTAAAATAGGCAATTGAATTGCTGCAATTTTGCCTTTATCCCTAGTCTTGTATTTAT
TTATAAATATTTATTTAGAATAATAATTTTGTTTACTTTGATACTGACCATTCGTTAAAC
GTTTTTATGAAAGTGTTTTTCAATTTCTCATTTTCAGTTACAAAATCTGTACTATATGAC
TATGAGCAAAAATATATTGCCTCCAACGTTTAGTGGCAATAAGCTTTATGTTGCTTCTAT
TGCATATGTTTAATTTTATCGATTTTATACATTTAGTTGGGTTAAAATGAAACTAAGTTA
TTAGTGTCGCACATCTATGGGAATGAGATTCTGTCTAGCAGCCAGATCAGTAGTGCAGTC
ACTGCAGTGGTAATACTGATGGCTTTGAAAGCGTGTGTTTGGGTTTTAAATCTTTATGTG
GGAAAGAAATATATCTCTGACAGTTTTAACAGCCTATCCACACATACCATGTACACATAC
CATAT
| ProSiteProfiles |
Agenet-like_dom (IPR008395) - T[3-50] 10.817 - T[65-117] 23.598 |
| SMART |
KH_dom (IPR004087) - T[220-287] 7.9E-5 - T[288-360] 0.0029 |
| Gene3D |
KH_dom_type_1_sf (IPR036612) - T[221-283] 5.1E-26 - T[284-363] 2.0E-24 |
| SUPERFAMILY |
KH_dom_type_1_sf (IPR036612) - T[222-287] 3.98E-11 - T[288-398] 1.52E-11 |
| Pfam |
KH_dom_type_1 (IPR004088) - T[224-283] 3.6E-5 - T[288-356] 1.8E-11 |
| Pfam |
FXMRP1_C_core (IPR022034) - T[358-469] 4.6E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FXR1_HUMAN | 48.081 % | 419 | 7.27E-140 |
| FXR2_HUMAN | 54.377 % | 421 | 1.12E-139 |
| FMR1_HUMAN | 53.846 % | 362 | 1.23E-117 |