- Transcript 'Moocci.CG.ELv1_2.S47...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S478996.g16805.01.t
Possible name(s)
PUF60; U2AF2
Gene model
Location
S478996 [23,647 / 27,788]
Amino acid sequence
Length: 487
>Moocci.CG.ELv1_2.S478996.g16805.01.p
MNEPPQQQEPSFNNGDHYQNQEPQNDERTSERERKSESSKKDRKHRDRDHDRRHRSKERD
RKRKSRSGSRERRRRHHRSRSRDRSDRKRRSRSRENKKKKNYKYWDVPPPGFEHLTPLQY
KAMQAAGQIPLVNPVATAAAGSGAVPVGGNQMTRQYISFQARRLYVGNIPFGVTEDAMME
FFNNQMQVAGLSQAPGNPILAVQINLDKNFAFLEFRSVDETTQALAFDGINFMGQSLKIR
RPSDYKPLPGNYDAPSIHLPGVISTVVQDSIHKVTKQEQIFVGGLPNYLNDDQVKELLTS
FGPLKAFNLVKDSATSLSKGYAFAEYVDATITDQAIAGLHGMTLGEKKLIVQRASVGAKG
NLIGTLNTPVSIQVPGMMVGLGVAPPSEVICLMNMVTPEELQDDEEYEDICEDVRDECNK
LGAVVSLEIPRPVQGTEISGVGKIFVEFKDVLDAQKASNALSGRKFANRVVVTSFYDPDL
YHRREFE
Nucleotide sequence
Length: 1,967
>Moocci.CG.ELv1_2.S478996.g16805.01.t
AAACTTTGATTAGTTTAGCTAAGAAACCATGAATGAGCCACCACAACAACAAGAACCATC
TTTTAACAATGGGGATCACTATCAAAATCAAGAACCGCAAAATGATGAAAGAACTTCTGA
AAGAGAACGGAAAAGTGAAAGTTCAAAAAAAGATCGTAAACACAGAGACCGTGATCATGA
TAGAAGACACAGAAGTAAGGAACGCGACAGAAAAAGAAAAAGTAGAAGTGGAAGCAGAGA
GAGAAGACGCAGGCATCATCGATCAAGAAGCAGAGACCGCAGTGACAGAAAGCGAAGAAG
TAGAAGTCGCGAAAACAAGAAGAAGAAAAACTACAAATATTGGGACGTTCCCCCTCCTGG
TTTTGAGCACTTGACGCCATTACAATACAAAGCAATGCAAGCGGCTGGTCAAATTCCATT
GGTGAATCCGGTCGCAACTGCTGCAGCAGGTTCAGGGGCAGTGCCTGTTGGAGGAAATCA
AATGACTAGACAGTATATTTCTTTCCAAGCGAGACGTTTATATGTTGGAAATATTCCATT
TGGTGTAACTGAAGATGCCATGATGGAGTTCTTTAACAACCAAATGCAAGTTGCAGGTTT
ATCACAAGCACCTGGAAACCCCATTTTAGCTGTACAAATTAATTTAGACAAAAATTTTGC
ATTCTTGGAATTTCGCTCAGTTGATGAAACAACTCAGGCATTAGCATTTGATGGTATTAA
CTTCATGGGCCAATCACTGAAAATCCGTCGCCCAAGTGATTATAAACCATTGCCAGGGAA
TTATGATGCACCATCTATACACCTTCCTGGAGTCATTTCAACAGTTGTCCAGGATTCTAT
TCATAAGGTGACGAAACAAGAACAAATATTTGTTGGTGGTTTACCAAATTACTTGAATGA
TGACCAGGTGAAAGAATTGCTAACATCTTTTGGGCCACTGAAAGCATTTAACTTGGTTAA
GGATAGTGCAACCAGTCTTTCAAAAGGGTATGCTTTTGCTGAATATGTTGATGCGACAAT
AACTGATCAAGCAATTGCCGGACTTCATGGCATGACATTGGGTGAGAAAAAGCTAATTGT
GCAAAGAGCTAGTGTCGGTGCAAAGGGTAATTTGATAGGGACACTCAATACTCCTGTTTC
AATTCAAGTACCAGGCATGATGGTGGGGTTGGGTGTTGCTCCACCAAGTGAGGTAATTTG
TCTTATGAATATGGTGACCCCTGAGGAATTACAAGATGATGAAGAATATGAAGACATCTG
CGAGGATGTTAGAGATGAATGCAACAAACTGGGAGCTGTTGTAAGCTTGGAAATTCCTAG
ACCAGTTCAAGGTACTGAAATCAGTGGTGTTGGCAAAATATTTGTTGAATTCAAAGATGT
ACTGGATGCTCAAAAAGCCTCAAATGCTCTGTCTGGCCGAAAGTTTGCAAACCGTGTAGT
TGTTACATCATTTTATGACCCAGACTTATATCACAGACGGGAATTTGAATAACTTAAGTG
CACTTGAGTATGACACATTTGACGTACAGAAAAGATAAGTTATAAAAATAACAAGAAGAC
CACAAATTGATTTCAAAACTGTACCTATCATGCTGAACTGAAAAGGTTAAAAAGCATGGA
TTTTAAAATTCCTGTACCTGTACATATTACAGTGTAGCTCCTTTTTTTACTTAAAACTTT
AATTATNNNNNNNNNNTTACATCTTATTATCTAGCTTAACGGAAACAACAATTCAACTGT
ATTAAAATTGAACATATTACATATTTTAAAGTAAAAATAAACAAACATGCATATTATATA
CTACGGTAATTTTTCAGTGGTAAGAATAGCATTTTAGATTTTTAGAAGTAAAATACAATA
CAATCATGTATGAAAATACAGTGTAGTGCACATTTGCCAGTTTGGTAAAAAAATAAGTTG
CAATTAACTATATTTTTAGAAGCCAGCACATTCAAAATTATTGGCTT
| TIGRFAM |
U2AF_lg (IPR006529) - T[26-486] 4.3E-152 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[162-244] 13.925 - T[278-356] 14.999 - T[388-478] 8.791 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[162-247] 4.6E-59 - T[248-251] 4.6E-59 - T[278-329] 4.6E-59 - T[330-351] 4.6E-59 - T[384-487] 3.4E-34 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[162-246] 2.42E-19 - T[280-366] 1.02E-25 - T[395-479] 1.02E-25 |
| SMART |
RRM_dom (IPR000504) - T[163-240] 1.1E-10 - T[279-352] 1.5E-15 - T[389-474] 0.36 |
| Pfam |
RRM_dom (IPR000504) - T[164-238] 1.1E-6 - T[280-349] 1.2E-14 - T[412-471] 1.1E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| U2AF2_HUMAN | 69.704 % | 539 | 0 |