- Transcript 'KH2012:KH.C11.339.v1...' >
- Transcript 'Mooccu.CG.ELv1_2.S66...' >
- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.S1007.2.v1...' >
- Transcript 'Moocci.CG.ELv1_2.S48...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S484557.g17382.01.t
Possible name(s)
LRP5; LRP6
Gene model
Location
S484557 [22,002 / 28,588]
Amino acid sequence
Length: 860
>Moocci.CG.ELv1_2.S484557.g17382.01.p
MGVNDRKSRTLIIDQLPDLMGLKAISKDPILGTNPCAVNDGGCSHLCLYTPMGPKCHCPT
GLEILADMKTCIEPKAFLLYSLDDVNMVDVKMFSLETAKGMSKSLPFHTSVSPSLIDFTV
QDSRIYWVDIEEQKIFRAFLNGTEIEAVVELGLELVEGIAVDWLSGNIYWTNFPSSIEVM
KIGSTSRRTVIWEGLDMARCLALDPNNGYIYWSEWSLTGGIKRAEMDGSNNITLIPEKYT
HRANSLTIDFKEHRLYWADIDAGVIRSSNLSGGDIRLVISEQQEERIYTLALYQGYVFWS
DSLSLTINRANKTEGNNPVVLQTNVAVADMKVFHASRQTGMNACAHNNGGCQHLCFAAPE
GKHKCACPAHYTLNADNTTCTAPLDFLLISEGKSINQIVYNKNEKTPEPSVLPIHGLKHV
CVVDNDPVEHYLYWLNCDRNEIVRARQNGTENSTVLSNKDVQRKKILDFKIDPFNRLVFW
IDDTGAINLMRIGGLINGTVFQGNNVFNVQEDNLYIRPKHLTISPKNSVMFFTSTNSKDR
MSIIKASYSGKIIKVFFKHQLKNIIGISLDMIQDKLYWISDSGIEQCDVDGSKRKKIIKS
GLTNPLGIAVSNSEVFWIDTDINFDNRGLIEKLSGSKSKVVQSRIKDLSAISAVNAIHPK
DLELYPCHSDNGGCSHVCLNNIDGTSSCACPVHLKIQNDNFCDKPPTCSPDQFTCETVGD
IPPCIPLSWRCDGQKECADGSDEKNCPICKSSDSFRCGAGMGNSDDDGMSELYGILGTLA
DISAPVQCVAKSKVCDGSKDCFDASDEQNCATCLQPEFPCGDGSRCITKDQLCDKTKDCA
DGSDENQQDCNAREFIDQYF
Nucleotide sequence
Length: 2,697
>Moocci.CG.ELv1_2.S484557.g17382.01.t
GATGGAAGCAACAGAAAAGTGTTGTTGTCTGAAAGAATTCCTCATGTGTTTGGGTTTAGT
TTGTTAAATGACCAATTGTATTGGACTGATTGGAACCGAAGGCGTGTAGAAAGAATGGGA
GTGAACGATCGAAAATCTAGAACCCTGATCATTGACCAATTGCCTGATTTAATGGGGTTA
AAGGCGATTAGCAAAGATCCGATCCTTGGCACAAATCCTTGTGCTGTAAATGATGGAGGG
TGTTCTCATCTTTGCCTCTACACACCAATGGGCCCGAAATGTCACTGCCCCACAGGATTA
GAGATTTTGGCAGATATGAAGACATGTATTGAGCCAAAAGCTTTTCTTTTATACTCGTTA
GATGATGTAAATATGGTGGATGTGAAAATGTTTTCTCTGGAAACTGCAAAAGGAATGAGC
AAATCTTTACCGTTTCACACCTCTGTTTCACCTTCTTTAATCGATTTCACTGTGCAGGAC
TCAAGAATATACTGGGTGGATATTGAGGAACAGAAAATATTCCGCGCATTTTTAAATGGC
ACTGAAATAGAGGCAGTAGTAGAACTTGGTCTGGAATTGGTTGAAGGAATTGCAGTTGAT
TGGCTTAGTGGTAACATCTACTGGACAAATTTTCCATCCTCAATCGAAGTAATGAAAATT
GGCAGCACAAGCAGAAGAACTGTCATCTGGGAAGGCTTGGACATGGCCAGATGTCTTGCT
TTAGATCCCAATAATGGATACATCTACTGGTCAGAATGGAGTTTGACTGGTGGTATAAAG
CGTGCTGAGATGGATGGTTCAAATAATATAACTTTGATTCCGGAGAAATATACTCATCGA
GCTAATTCTCTTACCATAGATTTTAAAGAACATAGACTTTACTGGGCAGATATAGATGCT
GGTGTCATTAGATCATCTAACCTATCTGGTGGAGATATTCGTCTGGTAATATCTGAGCAA
CAAGAAGAAAGAATATACACACTTGCTCTTTACCAAGGTTATGTGTTTTGGTCTGATTCT
CTTAGTTTGACAATTAATAGAGCTAACAAGACAGAAGGAAATAATCCGGTTGTTCTGCAA
ACCAATGTTGCTGTTGCTGATATGAAAGTGTTTCATGCTTCACGTCAAACTGGAATGAAT
GCTTGTGCTCATAACAATGGTGGGTGCCAACATTTATGCTTTGCAGCACCTGAAGGGAAA
CACAAGTGTGCTTGTCCAGCACATTACACACTTAATGCAGATAACACCACATGTACAGCC
CCCTTGGATTTCTTGCTTATAAGTGAAGGCAAATCTATTAATCAAATTGTGTATAATAAA
AACGAGAAAACTCCTGAGCCATCTGTGCTGCCAATTCACGGACTAAAACATGTTTGTGTT
GTTGACAACGATCCGGTTGAACATTATCTCTATTGGTTAAACTGCGATCGAAATGAAATT
GTAAGAGCGCGACAAAATGGCACTGAGAACTCGACAGTTTTATCAAACAAAGATGTTCAA
CGAAAAAAGATTCTTGATTTCAAAATTGATCCTTTTAATCGTTTAGTGTTTTGGATTGAT
GATACGGGAGCCATCAACTTGATGAGGATTGGTGGATTAATCAATGGAACAGTTTTCCAG
GGAAATAATGTTTTTAATGTTCAGGAAGATAATTTGTATATTAGACCAAAACATCTCACC
ATTTCTCCTAAAAATAGTGTTATGTTTTTCACCAGCACAAACTCTAAGGATAGAATGAGT
ATTATAAAGGCTTCATATAGCGGAAAAATAATTAAAGTTTTTTTCAAACATCAACTTAAA
AATATAATTGGGATATCTTTGGATATGATACAAGATAAACTGTATTGGATAAGTGACAGT
GGAATTGAACAGTGTGATGTTGACGGTAGCAAAAGAAAAAAAATTATAAAGTCAGGATTA
ACCAACCCCCTTGGAATAGCTGTGTCGAATTCGGAAGTTTTTTGGATTGATACAGATATA
AACTTTGATAATCGGGGGCTAATTGAAAAACTTTCTGGATCGAAAAGCAAAGTAGTGCAA
AGTCGCATTAAAGATTTATCTGCAATAAGCGCAGTCAATGCAATTCACCCTAAAGATCTT
GAATTGTATCCATGCCATAGCGATAACGGTGGATGTTCACATGTATGTTTGAATAACATT
GACGGTACATCTAGCTGCGCATGTCCAGTTCATCTAAAAATACAAAATGATAATTTCTGT
GACAAACCACCAACTTGTTCTCCAGACCAATTCACTTGTGAGACAGTAGGAGATATTCCA
CCATGTATCCCATTAAGCTGGCGTTGCGATGGGCAGAAGGAGTGTGCTGATGGTTCTGAT
GAGAAGAACTGTCCTATCTGCAAATCTTCTGATAGCTTTCGTTGTGGTGCAGGGATGGGA
AATTCCGATGATGATGGCATGTCAGAGTTGTACGGAATACTAGGTACGCTTGCAGATATC
AGTGCCCCAGTGCAGTGCGTAGCGAAATCAAAAGTTTGTGATGGTTCAAAAGATTGCTTT
GATGCATCCGATGAACAAAATTGTGCAACTTGCTTGCAACCAGAGTTTCCTTGTGGTGAT
GGTTCTCGGTGCATTACCAAGGATCAGCTTTGTGACAAAACAAAAGATTGTGCAGATGGA
TCGGACGAAAATCAGCAAGACTGCAATGCTCGTGAGTTTATTGATCAGTATTTTTAA
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[2-72] 1.3E-18 - T[73-369] 4.8E-89 - T[370-707] 7.6E-65 |
| SMART |
EGF-like_dom (IPR000742) - T[35-72] 0.13 - T[343-381] 0.02 - T[666-703] 34.0 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[103-145] 0.057 - T[146-187] 1.5E-5 - T[188-231] 3.1E-8 - T[232-275] 1.8E-4 - T[276-317] 4.0 - T[410-452] 6.8 - T[554-594] 0.0015 - T[595-635] 54.0 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[123-165] 14.078 - T[166-207] 10.017 - T[208-252] 11.943 - T[253-296] 10.11 - T[297-337] 4.448 - T[430-475] 8.346 - T[476-482] 4.564 - T[528-573] 5.678 - T[574-614] 12.012 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[124-163] 3.7E-5 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[706-748] 1.57E-9 - T[787-810] 9.95E-6 - T[812-851] 1.3E-7 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[707-746] 6.4E-12 - T[787-810] 1.6E-7 - T[812-850] 2.7E-8 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[707-748] 9.9E-14 - T[782-811] 0.072 - T[812-852] 1.2E-10 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[707-747] 13.863 - T[748-811] 11.288 - T[812-851] 12.438 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[708-746] 1.2528E-10 - T[787-810] 7.88651E-6 - T[813-846] 1.82363E-8 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[722-743] 6.7E-20 - T[786-807] 6.7E-20 - T[824-845] 6.7E-20 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[826-850] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1B_HUMAN | 28.637 % | 339 | 8.11E-99 |
| LRP6_HUMAN | 41.977 % | 645 | 0 |
| LRP5_HUMAN | 39.882 % | 616 | 0 |