- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Moocci.CG.ELv1_2.S49...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S497397.g18817.01.t
Possible name(s)
SYNE1; SYNE2; SYNE3
Gene model
Location
S497397 [17,560 / 27,781]
Amino acid sequence
Length: 1,661
>Moocci.CG.ELv1_2.S497397.g18817.01.p
KGTPLDNILQQSQLTVLDSQSKNNRTTIRGYLNRLEALCDRVQTEIGIKQDHFQEVDGIW
KIFLDRKEHLLKAVDNIEERADEDVSMNIVTQEEIQQVINTLIRLQFLLTKFDESNCCKF
AFIIPEDDHSEDGKLDELESKRYELTGLQSKGERLIQADPSQASVVNEHLRLVNMSWEDA
ETAIVENKEDFEKLSTLLRDYEFVHASVIKVVKNAEELSASADAPRHFSMEEVQRHLAKH
ETLKQDLDEKQTVVDDMTRKGKLFATEAKKQMVSDAAYINEELEEIVDRYLDVQDKVEET
MENLREQLTLWRELSGVDEEIEEFMNTTISDLNATRSTLENSQDLQDKLKLVHSDIQKHQ
ENYEVLQRKVLDMQARRRKTSVGELDELAQVNENMKSKLEKATTIYKQVENILQISLSFL
IIVTLLVMQSKLSDFTTQKAGLSKYVTELYDWLKHKEQSLNNMMKNKRPDNLKKCRGRFR
TKIVTQLIDINDEVLKQRDNVEQTEEHLNGLCRKYQTSELKQEQENVKKLTDTYEEVLKL
ASSTMEVMEKSLDEAFNKAVKDFYSWYRAGREILAACVDSSGDLPALEERLEKLQTFLAK
AKDGEERVNTAKTAGASCIELLPRAGAESVKQQLSSLDDDWEELISNLEEQKGFLESSLS
VLRSMEDNRKDLEKWLKIVERKLRDEEETSSGVQERSEQLERLKAVSKDLGSKSSQIETL
MQQAYELVESDMTQSSSARKAHQLISNYHGLTKKAKEQERQYTQNLANFKEYQDALEAAK
SWVQSTKNSLENCINSSNDKTEIEISLDQIQSLITEKQEGEISLNIALGKGERSMESCTQ
NEKDNVKRELRELKESHELLVKDLSNSKANLNQKLLDWAQFDQAKAELMSWLDENEAVLS
GSLAPSVDLKDKESQLEKYKFILEDIESHEEMVDLCCTKAKELNQEMKMQQYERVMSLAK
ERVEFLESAVNLHEQYYDAVQDFSSWINSTKEELNRWSDLAGDKDLCEKKLTKVQGIPLG
LLTSKYYFIYCYYHDKPTPNIETSPGLSLKSTRPHGRMKLDMVCEIGERVMVSTADDGKE
VLNTEIESLKEEWKTWDRGLIEAEISLESRLTQLSEYEESFEVEKSALVKLLQTFKSQLS
NVEKDVSDDTDTSAIKPVKAISVLMSCQNLTTELDKLQETADTLKARLNSLCRSYHGSEI
NDLSKVVTEELKRYDNLKLKVLKLSTASEKSLLNSFQKQQGEFDSWLKTKRDLVQSLGEV
SGNKSAVKNKLQHLQALLSSVDEGQMKVNSLINLSENLPSSLLHAENSENIRHQTKRNKE
SWKNFLNNIQDKEQNLRSYVEQLQEFETGINELAEWMVETTEKYEAETGLKSTLGLKKSH
FNSLQSMSESISDNSYKFERLKRKAHKLGSSSELGKLNQLTVKHQTLTKKVQDALKQSEL
YLLHHQEYQTAYTEAQEWLQDFKHRMDTYSNIIGDKTMLRQRLSKLDQLLASKQDGEVKI
STARGLGEKTMPSTAANGRHGIETQLKNLLESWDLCMAQSDQCKTKLTQAITLWEKYDEA
VRSAQMWLKQTDDILRAEKEELDLQTMEQESLFAELEKYRSLFRDVKSKESLIENAQSSA
NSIVTITGDVSGTRVDLAELRDHYQELSNLAQGNPEILNPN
Nucleotide sequence
Length: 4,983
>Moocci.CG.ELv1_2.S497397.g18817.01.t
AAAGGAACACCCTTGGATAACATTTTACAGCAGTCTCAACTTACTGTACTTGATTCACAA
TCTAAAAACAATCGAACGACAATCCGTGGCTATCTTAATCGGTTGGAAGCTTTGTGTGAT
CGTGTTCAAACCGAGATTGGGATAAAACAAGATCATTTTCAGGAAGTTGATGGAATTTGG
AAAATATTTCTAGATCGCAAAGAACATTTATTAAAAGCTGTTGATAACATTGAAGAAAGG
GCGGATGAAGATGTTTCTATGAATATAGTAACTCAAGAAGAAATTCAACAAGTTATAAAT
ACCCTGATCAGACTGCAGTTTTTGTTGACTAAGTTTGATGAATCTAATTGCTGTAAATTT
GCTTTCATTATACCTGAAGATGATCACAGTGAGGACGGAAAGCTTGATGAGCTTGAATCA
AAGAGATATGAACTTACTGGTTTGCAAAGTAAAGGGGAAAGACTTATACAAGCGGATCCC
TCTCAAGCTTCTGTTGTTAATGAACATCTTCGTCTTGTAAATATGAGTTGGGAAGATGCC
GAAACTGCAATTGTTGAAAACAAAGAAGACTTTGAAAAACTTAGCACTCTTCTTCGCGAT
TATGAATTTGTTCATGCAAGCGTCATTAAAGTTGTAAAAAATGCTGAGGAGCTTTCTGCT
AGCGCTGATGCACCAAGACACTTTAGCATGGAAGAAGTTCAAAGACATCTTGCTAAACAT
GAGACATTAAAACAAGATTTGGATGAAAAGCAGACAGTTGTTGATGACATGACAAGAAAG
GGAAAACTGTTTGCCACTGAAGCTAAAAAGCAAATGGTGTCTGATGCTGCTTATATTAAT
GAAGAACTCGAAGAAATAGTTGACAGGTATTTGGATGTACAGGATAAAGTAGAAGAAACT
ATGGAAAATCTGAGAGAGCAGTTAACGCTATGGAGAGAACTATCAGGTGTTGATGAAGAA
ATAGAAGAGTTTATGAATACAACAATCAGTGATCTGAATGCAACACGTTCAACGCTCGAA
AATAGTCAAGACCTGCAAGACAAACTTAAATTAGTACACAGTGATATACAAAAGCATCAA
GAAAACTATGAAGTTCTTCAACGTAAAGTTTTGGATATGCAAGCTCGTCGCCGTAAAACT
TCTGTTGGGGAACTTGATGAACTAGCCCAGGTTAACGAGAATATGAAGTCAAAGTTAGAA
AAAGCAACAACTATTTATAAACAGGTGGAAAATATATTACAAATTTCACTTTCATTTTTG
ATTATTGTTACATTGTTAGTAATGCAGTCAAAGTTGTCAGACTTCACCACTCAAAAAGCT
GGTCTTTCCAAATATGTTACTGAGTTGTATGACTGGTTAAAACACAAGGAACAAAGTCTA
AATAATATGATGAAAAATAAAAGACCTGATAACTTGAAGAAATGCAGAGGAAGATTTCGA
ACTAAAATAGTTACACAGTTAATCGATATTAATGATGAAGTCCTGAAACAACGAGATAAT
GTTGAACAAACTGAAGAACATTTAAATGGCTTGTGTAGAAAATATCAAACGTCTGAACTT
AAGCAAGAACAGGAAAACGTAAAGAAGTTAACAGATACTTATGAAGAAGTTCTTAAACTT
GCAAGTTCAACAATGGAGGTGATGGAGAAAAGTTTAGATGAAGCTTTCAACAAAGCAGTA
AAAGACTTCTACAGCTGGTATCGGGCAGGAAGAGAAATACTAGCAGCCTGTGTTGATTCT
TCTGGAGACCTTCCTGCCTTAGAGGAAAGACTTGAAAAGTTACAAACATTTTTGGCGAAA
GCAAAAGACGGAGAAGAAAGAGTAAATACAGCCAAAACAGCAGGGGCAAGTTGCATTGAG
CTTTTACCACGTGCTGGAGCAGAATCTGTTAAACAACAACTCTCCAGTCTAGATGATGAT
TGGGAGGAACTCATTAGCAATTTAGAGGAGCAAAAAGGATTTTTGGAATCTTCATTGTCT
GTTCTTCGATCGATGGAAGATAACCGCAAAGACCTTGAAAAGTGGCTGAAAATTGTTGAA
AGAAAATTGAGGGACGAAGAAGAAACGTCTTCTGGAGTTCAGGAGAGATCTGAACAGCTA
GAAAGATTAAAGGCAGTATCGAAGGATCTTGGTAGCAAATCCAGTCAAATTGAAACATTG
ATGCAACAGGCGTATGAGCTTGTTGAAAGTGACATGACACAAAGTTCTAGTGCTAGAAAG
GCTCACCAACTTATTTCAAATTATCATGGACTTACTAAGAAAGCAAAAGAGCAAGAAAGA
CAATATACCCAGAATTTGGCCAACTTTAAAGAATATCAAGATGCACTTGAAGCAGCTAAA
TCGTGGGTCCAATCAACGAAAAATTCACTTGAAAATTGTATTAATTCTTCAAACGACAAA
ACTGAAATTGAAATCAGCTTGGATCAAATACAATCACTAATAACTGAAAAACAAGAAGGT
GAGATAAGTTTGAATATTGCATTGGGAAAAGGTGAAAGATCAATGGAAAGTTGCACTCAG
AATGAAAAAGACAATGTTAAACGGGAGTTGCGAGAACTAAAAGAATCTCATGAGCTTTTA
GTTAAAGATTTGTCGAATTCTAAAGCAAATCTCAACCAGAAGCTACTTGATTGGGCTCAG
TTTGATCAAGCCAAGGCTGAGTTAATGTCATGGTTAGATGAGAATGAGGCTGTTTTGTCA
GGATCCTTAGCCCCCTCTGTTGATTTAAAAGATAAAGAGTCACAGTTGGAAAAATACAAA
TTTATCCTAGAAGATATTGAATCTCATGAGGAAATGGTTGATCTTTGTTGCACTAAGGCA
AAAGAGCTTAATCAAGAAATGAAAATGCAGCAATATGAACGAGTAATGTCTCTTGCAAAA
GAGAGAGTTGAATTTCTCGAATCAGCTGTGAACTTACATGAACAATATTATGATGCAGTA
CAAGATTTTAGCAGCTGGATAAACTCGACAAAAGAAGAATTAAACAGATGGTCAGATCTT
GCGGGAGATAAAGATTTATGTGAGAAGAAATTAACTAAAGTTCAGGGTATTCCATTGGGT
CTTTTAACAAGCAAATATTACTTTATATATTGCTATTATCATGACAAACCAACTCCTAAC
ATTGAAACAAGCCCCGGATTGAGTTTAAAATCAACCCGGCCGCATGGTCGAATGAAGTTG
GATATGGTTTGTGAAATTGGTGAACGTGTTATGGTCAGCACTGCAGATGACGGGAAGGAA
GTTTTAAATACTGAAATTGAAAGTTTGAAAGAAGAATGGAAAACATGGGATCGAGGTTTA
ATTGAAGCTGAAATTTCCCTTGAGTCCCGACTGACGCAACTATCTGAATACGAAGAAAGT
TTTGAAGTTGAAAAATCCGCCCTTGTAAAACTCCTTCAAACTTTTAAATCACAATTGAGC
AATGTAGAAAAAGATGTTTCCGATGATACTGATACCAGTGCAATAAAGCCAGTTAAGGCT
ATTTCAGTGTTAATGTCTTGTCAGAACTTAACAACAGAACTGGACAAATTACAAGAAACT
GCCGACACTCTAAAAGCTAGGTTGAATAGCTTATGTAGATCTTATCATGGATCTGAAATC
AATGACTTGTCTAAAGTTGTAACAGAAGAATTAAAAAGATACGACAATTTGAAACTTAAA
GTGTTAAAGTTATCAACAGCGTCTGAAAAAAGTTTGCTGAATTCATTTCAAAAACAGCAA
GGTGAATTTGACAGTTGGTTAAAAACTAAACGAGATTTAGTTCAGAGTTTGGGAGAAGTT
TCTGGAAACAAAAGTGCTGTCAAAAATAAATTACAGCATTTGCAGGCATTGTTGTCAAGT
GTAGATGAAGGTCAAATGAAAGTGAATTCTTTGATCAATTTGAGTGAGAATTTACCATCA
TCACTACTGCATGCTGAGAATAGTGAAAATATTCGCCATCAAACAAAGCGGAATAAAGAA
TCTTGGAAAAACTTCTTAAACAATATTCAGGACAAGGAACAAAATTTAAGAAGTTATGTG
GAACAACTTCAAGAATTTGAAACTGGTATAAATGAACTTGCTGAATGGATGGTTGAAACT
ACAGAAAAATATGAAGCAGAAACTGGACTAAAATCAACGCTGGGATTAAAGAAATCTCAT
TTTAACTCACTACAATCAATGTCAGAATCAATTTCTGATAATTCGTACAAGTTTGAACGT
TTGAAAAGGAAAGCTCACAAACTTGGTAGTTCATCTGAACTTGGTAAACTAAACCAACTC
ACAGTAAAACACCAAACTTTGACTAAAAAAGTTCAGGATGCATTGAAACAAAGTGAGCTA
TATCTTCTTCACCACCAAGAATATCAAACTGCTTACACTGAAGCTCAGGAATGGCTTCAA
GATTTCAAACATCGAATGGATACATACTCTAATATTATTGGTGATAAGACTATGCTCCGA
CAGCGATTATCAAAACTTGACCAACTGTTGGCTTCAAAACAAGATGGTGAAGTCAAAATT
AGTACTGCAAGAGGACTTGGGGAGAAAACTATGCCATCTACTGCAGCCAATGGTAGACAT
GGAATTGAAACACAGTTAAAAAATTTATTGGAAAGCTGGGATCTTTGTATGGCTCAATCT
GATCAGTGCAAAACAAAACTTACTCAAGCAATTACATTATGGGAGAAATATGACGAAGCA
GTAAGAAGCGCACAGATGTGGTTGAAGCAAACTGACGATATTCTTCGTGCTGAAAAAGAG
GAACTGGATCTTCAGACAATGGAGCAGGAATCATTATTTGCGGAACTTGAAAAATATAGG
AGTTTATTTAGAGATGTAAAAAGTAAAGAAAGTTTAATTGAAAATGCTCAAAGTAGTGCA
AATAGCATTGTCACTATCACTGGGGATGTATCTGGAACCAGAGTTGATTTGGCTGAACTT
CGTGACCATTATCAAGAGCTGTCCAATCTTGCACAAGGCAACCCAGAAATTTTAAATCCT
AAT
| SMART |
Spectrin/alpha-actinin (IPR018159) - T[199-305] 1.3E-4 - T[554-656] 2.5E-4 - T[663-763] 1.3 - T[770-872] 2.0 - T[879-967] 0.07 - T[1234-1337] 1.8E-4 - T[1446-1548] 1.9 |
| Pfam |
Spectrin_repeat (IPR002017) - T[214-306] 1.0E-6 - T[555-656] 7.8E-7 - T[877-950] 2.4E-5 |
| PANTHER |
SYNE1 (IPR030265) - T[1049-1146] 7.9E-245 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SYNE1_HUMAN | 25.641 % | 530 | 1.13E-155 |