- Transcript 'Moocci.CG.ELv1_2.S50...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S509267.g19275.01.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S509267 [10,113 / 24,794]
Amino acid sequence
Length: 654
>Moocci.CG.ELv1_2.S509267.g19275.01.p
MNSNSGPSYPMASLYVGDLHPDVTEAMLYEKFSQAGPVLSIRVCRDMVTRRSLGYAYVNF
QQPADAERALDTMNFDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTF
SAFGNILSCKVSCDENGSKGYGFVHFETEESALRSIEKVNGMLLNDKKVFVGKFISRGDR
HKQIGERMKNFTNVYIKNFGDSIEESLLKDEFEQYGVVKSVAVMKDQEGNSRGFGFVAFE
NHEDAQKAVEALNGKDINGHEIYVGRAQKKAERMSELRQKYERQKQERIQRYQGVNLYVK
NLDDTIMDDGLREAFAPYGTITSAKVMSDCERSRGFGFVCFSSPEEATKAVTEMNGRILG
TKPLYVALAQRKEDRKQHLAAQYMQRVTNSMGMRIAPPNQMVGQNFQSGAPYFMPIQPQS
RFLQGPILRATPRWQAASSQGFQVPNQMRPSGPRSAGPAIRPMSQAMSRGGMPQRMDMMQ
RQQQQQLVMQNNRHQGFKYTQGVRNPAMPAAGMNQQQQVQQQEAVAQPAVHVQGQEPLTA
SMLAGASPQEQKQMLGERLYPLIEQSHRELASKITGMLLEIDNSELLHMLESRESLKAKV
EEAVAVLQAHQAKMAASRRQAAAPATTTASTPSAVQVASNPVPAQIPVAVNGQE
Nucleotide sequence
Length: 2,527
>Moocci.CG.ELv1_2.S509267.g19275.01.t
TTTTGTTGTTTGTCTTTGGATATCGTGGTGAGCTGCTGTGGGCATATTGTTTGTCCTCGT
TATATTAAAAAAATCCAAAAAAATCTAAAAAATTATAAAACCCTACAAAAAAATCTAAAA
AGAAATAAAAGTTCATATATTTTTTGAACGTTCTACAAAAAAAAAACTTGCATAATGAAT
TCCAACTCAGGACCATCTTACCCTATGGCATCATTGTATGTTGGCGACTTGCACCCAGAT
GTGACGGAAGCCATGCTTTACGAAAAGTTCTCGCAAGCTGGACCTGTTCTGTCAATCAGA
GTTTGTCGAGACATGGTCACCAGACGTTCTCTTGGCTACGCTTACGTGAATTTTCAGCAA
CCAGCTGATGCTGAACGTGCTTTGGATACAATGAACTTTGATCCAATCAAAGGTCGTCCA
ATTCGTATCATGTGGAGCCAAAGAGACCCAAGTCTTCGTAAATCTGGCGTTGGCAACATT
TTTATTAAGAACTTGGACAAGTCGATTGATAACAAAGCTTTGTATGACACCTTTTCAGCT
TTTGGAAACATTCTATCTTGCAAGGTGTCATGTGATGAAAATGGATCAAAGGGATATGGA
TTTGTCCATTTTGAAACCGAAGAATCTGCTCTCCGTTCTATTGAAAAGGTGAATGGTATG
TTGCTAAATGACAAAAAGGTGTTCGTAGGAAAGTTTATTTCCCGTGGAGATCGTCATAAG
CAAATTGGTGAACGAATGAAGAACTTTACAAACGTTTACATCAAAAACTTTGGGGATAGC
ATTGAAGAATCTTTACTGAAAGATGAATTTGAGCAATATGGAGTGGTAAAAAGTGTGGCT
GTTATGAAAGACCAGGAGGGAAACTCTCGTGGTTTTGGTTTTGTTGCTTTTGAGAACCAT
GAGGATGCTCAAAAAGCAGTTGAAGCACTCAATGGCAAAGATATTAATGGTCATGAAATT
TATGTTGGAAGAGCTCAGAAGAAAGCTGAGCGTATGTCTGAGCTTCGTCAGAAATACGAA
CGTCAAAAGCAGGAGAGAATTCAACGCTATCAAGGCGTCAATCTTTATGTCAAGAACTTG
GATGACACCATCATGGATGACGGTTTAAGAGAAGCTTTTGCTCCATATGGTACAATCACA
AGTGCAAAGGTAATGTCTGACTGTGAAAGATCCCGCGGTTTTGGTTTCGTCTGTTTCAGT
TCTCCCGAAGAAGCCACTAAAGCCGTGACTGAAATGAATGGTAGAATTTTGGGCACTAAG
CCCCTTTATGTTGCTTTGGCTCAGCGCAAAGAAGACAGGAAACAGCATTTGGCTGCTCAA
TACATGCAACGTGTAACTAACTCCATGGGAATGCGCATTGCACCGCCCAACCAAATGGTG
GGTCAAAACTTCCAATCCGGAGCCCCGTACTTCATGCCGATTCAACCCCAGAGCCGATTT
TTACAGGGACCCATACTAAGAGCTACTCCAAGATGGCAGGCTGCTTCATCCCAAGGGTTC
CAAGTTCCGAACCAAATGAGACCAAGCGGCCCACGTTCGGCTGGCCCTGCCATCCGTCCA
ATGTCGCAGGCCATGTCACGAGGTGGCATGCCACAGCGAATGGACATGATGCAGCGTCAA
CAACAACAACAACTTGTAATGCAGAACAACCGTCACCAAGGGTTCAAGTACACTCAAGGG
GTTCGAAACCCAGCCATGCCGGCTGCCGGAATGAACCAGCAACAACAAGTACAACAGCAA
GAAGCTGTGGCACAACCTGCTGTGCATGTACAAGGTCAGGAGCCACTCACTGCTTCCATG
TTGGCTGGAGCATCACCACAAGAACAGAAGCAGATGCTGGGTGAACGACTTTATCCCTTG
ATTGAACAATCTCATCGGGAGCTAGCTTCTAAGATCACCGGAATGTTGCTTGAAATTGAC
AACTCTGAGTTGCTGCATATGCTGGAATCTAGAGAATCGCTTAAAGCCAAGGTGGAAGAA
GCTGTTGCTGTTCTTCAAGCTCATCAGGCCAAAATGGCTGCATCCAGAAGACAAGCTGCT
GCCCCAGCTACTACAACTGCTTCCACACCATCAGCTGTACAGGTTGCTTCCAATCCTGTC
CCTGCCCAAATCCCTGTCGCCGTAAATGGACAAGAATAAAAATCCTTTCCGTTTTCACTT
GTTAAAAATATTCTTAAAAAAATCACCACACTTATATTTTAAATGTTTTAGCAAACATTT
ACTGCTGCTAATTTTTAAAATCAGTTAACTTTGTCAAACTAGATGTGTAAAATGATGTAT
AGTAAAAAAAATAATCTGCACCAAATTGTTTTTTCAGCTTTTATGTTTATGTAGGGTTTT
CTTTTTAAAATGTTGTGACTTTTCTGGTGTATATTAGTGTACCAAGCAAATGTGCCCTAA
TCTATTGTAGATTGGTGTTTGGATTTTGATCAAAACTAAAATTGGATACATCTATACATA
TCAATTTCAGTTTGTTTTGTTTTGGTGTTAAATGGAATAAATAAAAAATTGTTCTAATTA
AAAATAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-93] 3.9E-26 - T[94-180] 8.6E-23 - T[181-273] 1.5E-26 - T[274-383] 6.3E-27 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[11-178] 1.97E-48 - T[191-375] 2.24E-49 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[12-90] 17.882 - T[100-176] 16.159 - T[192-269] 20.218 - T[295-371] 18.393 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[12-608] 6.0E-239 |
| SMART |
RRM_dom (IPR000504) - T[13-86] 5.0E-23 - T[101-172] 7.3E-21 - T[193-265] 9.5E-27 - T[296-367] 3.1E-21 |
| Pfam |
RRM_dom (IPR000504) - T[14-84] 1.3E-20 - T[102-168] 4.8E-18 - T[194-262] 4.1E-23 - T[297-364] 2.9E-17 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[480-616] 2.35E-44 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[535-612] 21.777 |
| Pfam |
PABP_HYD (IPR002004) - T[541-607] 3.5E-29 |
| SMART |
PABP_HYD (IPR002004) - T[547-610] 7.6E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 65.217 % | 814 | 0 |
| PABP4_HUMAN | 63.19 % | 801 | 0 |
| PABP3_HUMAN | 61.12 % | 748 | 0 |