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  1. Transcript 'Moocci.CG.ELv1_2.S53...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S531343.g20270.01.t

Possible name(s)

DKC1; TRUB1

Location

S531343 [40,415 / 44,105]

Sequences

Amino acid sequence

Length: 541

>Moocci.CG.ELv1_2.S531343.g20270.01.p
MFNEKSEWSEHLSTNIATKFIVNYPQDYKWFKSPKFRELQHSGTFHITSSDNPPPKLKTS
QWPLLLKNHEKLNIRTNHYTPLPNGCSPLSRPIQDYIKTGFINLDKPSNPSSHEVVAWIR
RILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQTAGKEYVCIVRLHNAIEDQLKLT
RAVETLTGALFQRPPLISAVKRQLRVRTIYESKLLEYDDERRLGVIWLSCEAGTYVRTFC
VHLGLLLGVGGQMQELRRVRSGIVTENEQLFTMHDVLDAQWQYDHNKDESYLRRVINPLE
KLLISHKRIMLKDSAVNAVCYGAKIMLPGVLRYEDGIEIEQEIVIITTKGEAICLANALM
TTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKATLKKQMIKKGLLGKYGKPNESTPK
DWKEGETVKGEPVAVIASEEAKMDMKRKHEESSSSEDAASTADTPKQQTQELDKKALKKL
KKLKKKKKKEMEAENVSASMSLNTSTISSNIAVSSVDESVIKSPKDKKKKKKKKKEKSSE
E

Nucleotide sequence

Length: 1,837

>Moocci.CG.ELv1_2.S531343.g20270.01.t
ATGTTTAATGAAAAAAGTGAGTGGAGCGAACATTTATCCACCAACATCGCCACTAAGTTT
ATTGTCAACTACCCTCAAGACTACAAATGGTTTAAAAGTCCCAAGTTTAGAGAATTGCAG
CATTCTGGGACATTTCACATAACATCAAGTGACAACCCACCACCAAAGTTAAAAACCTCA
CAATGGCCGCTTTTATTAAAAAATCATGAAAAACTTAATATTCGTACAAATCATTATACA
CCGTTGCCAAATGGATGTTCACCATTAAGTCGACCAATACAAGATTATATTAAAACTGGT
TTTATTAATCTTGATAAACCTTCAAATCCATCATCACATGAAGTTGTTGCTTGGATTCGC
AGAATATTAAGGGTGGAAAAAACAGGTCACAGTGGAACATTGGATCCTAAGGTTACGGGC
TGTCTAATTGTCTGTATTGAACGAGCGACTAGACTTGTAAAATCACAGCAAACCGCAGGT
AAAGAATATGTATGCATTGTTAGACTTCATAATGCTATTGAAGACCAATTAAAACTGACA
CGGGCTGTAGAAACATTAACCGGAGCATTGTTTCAAAGGCCGCCATTGATATCTGCTGTA
AAACGTCAACTTCGTGTTCGAACGATATATGAAAGCAAATTATTGGAGTATGACGATGAA
AGGCGATTAGGTGTCATATGGCTAAGCTGTGAAGCTGGTACATATGTTAGAACTTTTTGT
GTTCATCTTGGGTTATTACTTGGTGTTGGGGGACAAATGCAAGAGTTAAGAAGAGTGCGC
TCTGGAATTGTTACAGAAAATGAACAACTATTCACAATGCATGATGTTTTGGATGCACAA
TGGCAATATGACCATAACAAAGATGAAAGCTACCTTCGACGCGTTATTAATCCACTGGAA
AAATTACTAATTTCACATAAACGAATAATGTTAAAAGACAGTGCGGTAAATGCTGTTTGT
TATGGTGCAAAAATAATGTTACCTGGTGTTTTACGATATGAAGACGGAATTGAAATTGAA
CAAGAAATTGTTATAATTACTACTAAGGGAGAAGCAATTTGTCTTGCTAATGCGTTAATG
ACAACTGCTGTTATTTCCACATGCGATCATGGCATTGTTGCCAAGATTAAAAGAGTCATT
ATGGAGCGGGACACCTACCCTAGAAAGTGGGGTTTGGGCCCTAAGGCTACCCTTAAAAAG
CAAATGATAAAAAAAGGTTTGCTAGGTAAATATGGTAAACCAAATGAAAGCACGCCCAAA
GATTGGAAGGAAGGTGAAACTGTTAAAGGCGAGCCAGTTGCAGTTATAGCATCTGAAGAA
GCTAAAATGGACATGAAGAGAAAACACGAGGAAAGTTCTAGTTCTGAGGATGCTGCAAGT
ACAGCTGACACTCCAAAACAACAAACCCAAGAATTAGATAAAAAAGCATTGAAAAAGTTA
AAAAAACTTAAAAAGAAAAAGAAGAAAGAAATGGAAGCTGAAAATGTATCAGCATCTATG
TCTTTAAATACATCTACAATTTCATCCAACATAGCAGTATCTTCTGTAGATGAAAGTGTA
ATTAAGTCGCCTAAAGATAAAAAGAAGAAGAAAAAGAAAAAGAAGGAAAAATCAAGTGAG
GAATGAAATTTAAAAACCAAGATTTCTTTTGAAAACTAAACTTAGAATGGAGTTTAAACG
CAAAGCAATGCAATTCGATTCCTAACATTTTGTTTGAGAACTATGTATTAGTTCTGTATG
TACTTTTTATTACACTGCCATTTTGTAATAAAGTATACAATGTATGGTGTAGGTAGCTAT
AAAAAAAAATTGCCAAATAAATATGAGCTGTAAAAAG

InterProScan

PANTHER
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[35-536] 8.7E-238
SMART
Dyskerin-like (IPR012960) - T[58-116] 5.6E-34
SUPERFAMILY
PsdUridine_synth_cat_dom_sf (IPR020103) - T[59-304] 3.12E-75
Pfam
Dyskerin-like (IPR012960) - T[59-116] 1.5E-31
TIGRFAM
tRNA_PsdUridine_synth_B_fam (IPR004802) - T[66-391] 3.3E-163
Pfam
PsdUridine_synth_N (IPR002501) - T[120-236] 1.9E-19
Pfam
TruB_C (IPR032819) - T[237-303] 2.9E-19
TIGRFAM
Uncharacterised_CHP00451 (IPR004521) - T[295-376] 2.2E-8
ProSiteProfiles
PUA (IPR002478) - T[306-381] 16.622
SUPERFAMILY
PUA-like_sf (IPR015947) - T[306-387] 1.33E-19
Pfam
PUA (IPR002478) - T[307-380] 1.5E-16
SMART
PUA (IPR002478) - T[307-381] 1.3E-18

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DKC1_HUMAN 66.994 % 623 0





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