- Clone 'cilv006j13' >
- Transcript 'Cisavi.CG.ENS81.R67....' >
- Molecular Tool 'Harore-Tbx6(PPAP)-mRNA (Kumano 2014)' >
- Molecular Tool 'Harore-Tbx6-mRNA (Kumano 2014)' >
- Transcript 'Moocci.CG.ELv1_2.S54...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S543864.g20926.01.t
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
S543864 [34,699 / 45,769]
Amino acid sequence
Length: 1,147
>Moocci.CG.ELv1_2.S543864.g20926.01.p
MVVIKFDNKLESNNIKSPFLQTSTTNMEKTTTIKTVAMDENENKLETDKLEIDSSNAIVI
SEDGQMVTEFSKESTKRSIEDADNDHVSKIAKTDLTDSVKVQDEVPITEVEVTHTLSQSE
KDFVVYTADMNSSQESEGKDSISLLEEQNKSVISSTDTEQDFQLELESGVQNNPQVQVVV
EQEVSTTDEAELSTISEEQESKNSINTATVAAPQGVNPAMMSNLLHTAAAVAASQNAAAA
TVQVVPGQSTGTIQLVPEAEVQNTQTLMANGIAPQGVNQSEDGKPNTQPVFTYLVTSQGT
LIAAHSSDGTQLISPPLQESNTTKKHRKNSKSHIPKTEKTDDDSGHGSGVNQLGGMYVNG
RPLPEPIRQRIVDLSHQGVRPCDISRQLRVSHGCVSKILARYYETGSIKPGVIGGSKPKV
ATPHVVNKITEYKRENPTMFAWEIRDRLLNDCVCTQESVPSVSSINRIVRSKTSEFMKDN
PRLNDQANTPSPLLHGERRRSVPSHNQTNQSEVVVQHLTPPGSQNLSQFMTVENGNSQII
SSDPQKPTTITAQNLPALLATLPPAQQIELLKNLGGELAIQQTPTKEETILTTVTTSPTQ
VINDTLQSSATTTVQVAQTTPPTQQLVMTSQGQVLSQPVTQPSQGLIMTSQGQLITTSPA
QSSQISQGGLVMTPSGQIVLQQATQQSTPNTQSVDQQQQQVVMQLQDLNKVLAAAASAGQ
NVAPTSATIQQPMQVPTFVSSQPSVSQQVAVTKPTQTAAPPVSTAAAASNLLGGGYVTIG
NMQISQQQLQQLAAQGVTLQTVPTATPATQNDNKPSSPEKEHTDTQTSDMENSTIQTPPV
SATSEMTVGSEVVISQEQQQQQFIKMLQNATVLVKQEPQEGPQLTNQTVAPATQASVANQ
QTSVNQLLLAAQQSQGTAQLLNAAAALSALQPQQTGTQGSTANANTNNNNVQQVLTSQQL
TQQLQQLANMQQQQSQLPQQQQQPGIVHILSAAAQLQNNNNNTSSDNLQKQLAMAQVLQQ
VQQNSGNNRMTLTELQPVSTLLSQLRPVSVQNATTEQPYIVVSSASSGTVSQTPLSGSTS
NTTLPPLVLPATQVTMVGGTQTSSTSVGSNPSQQPFTTIYSEAWKLATNGQNLRTTNEEA
KVSTSKN
Nucleotide sequence
Length: 4,029
>Moocci.CG.ELv1_2.S543864.g20926.01.t
GGCCTATAGGTCTTTATATCCGATACTGAAATATTTTGGTCAAATTTGTGAGCTATATAA
GCCTAAAAATTCAAGGTTATCCATGCTCACATGTAAAGGCATTAATGATATGATTTTGGA
AGCCCAGTAATGGTGGTTATTAAGTTTGACAATAAATTGGAGTCTAATAATATAAAGTCA
CCTTTTCTTCAAACTTCAACAACAAATATGGAAAAAACTACGACAATTAAAACTGTAGCC
ATGGATGAAAATGAAAATAAACTTGAAACTGATAAATTAGAAATAGATTCATCAAATGCA
ATTGTGATTTCAGAAGATGGTCAGATGGTCACTGAATTTTCAAAAGAATCAACAAAGCGA
AGTATTGAAGATGCTGATAATGACCATGTCAGTAAAATTGCAAAAACTGATTTAACAGAC
TCTGTTAAAGTTCAAGATGAAGTTCCTATCACAGAAGTTGAAGTCACTCACACTCTTAGT
CAAAGTGAAAAAGATTTTGTTGTGTATACTGCTGATATGAATTCGTCGCAAGAATCAGAA
GGAAAAGATAGTATCTCACTTTTGGAAGAACAGAACAAAAGTGTTATATCAAGTACAGAT
ACGGAGCAAGATTTTCAATTAGAATTGGAGTCTGGTGTTCAAAACAATCCACAAGTTCAA
GTTGTTGTGGAACAAGAAGTCAGCACAACTGATGAAGCAGAACTAAGTACTATTTCAGAG
GAACAAGAATCAAAAAACTCAATCAATACAGCTACTGTAGCAGCCCCACAAGGTGTAAAT
CCTGCAATGATGAGCAATCTGCTTCATACTGCAGCAGCTGTAGCCGCTTCACAAAATGCT
GCTGCTGCCACTGTGCAAGTTGTACCAGGTCAATCTACTGGCACAATTCAATTAGTTCCA
GAGGCTGAGGTTCAAAATACTCAGACATTAATGGCGAATGGCATTGCTCCTCAAGGTGTC
AATCAAAGCGAAGATGGAAAGCCAAATACACAGCCAGTATTTACATATCTTGTGACTAGC
CAAGGGACTTTAATTGCAGCACATTCAAGCGATGGAACTCAGTTAATTTCACCTCCTTTA
CAAGAGAGTAATACAACTAAAAAGCACAGAAAAAATTCAAAATCTCACATTCCTAAAACA
GAAAAGACAGATGATGATTCTGGTCATGGCAGTGGTGTCAACCAGTTAGGTGGTATGTAT
GTAAATGGGCGTCCATTACCAGAACCAATTAGACAGCGAATTGTTGACCTTTCGCACCAA
GGAGTACGACCATGTGACATTTCACGTCAGTTAAGAGTATCACATGGCTGTGTCAGTAAA
ATATTGGCAAGATACTACGAAACAGGCAGCATAAAACCGGGGGTGATTGGAGGTAGTAAA
CCAAAGGTTGCTACTCCCCATGTAGTGAACAAAATAACCGAGTACAAGAGAGAAAACCCA
ACAATGTTTGCTTGGGAAATCAGAGATAGGTTGTTGAATGACTGTGTTTGTACGCAAGAA
TCTGTTCCTAGTGTGTCTTCAATAAATCGAATTGTCCGAAGTAAGACATCAGAGTTTATG
AAAGACAATCCTCGATTAAATGATCAGGCAAACACTCCATCACCTTTACTACACGGAGAA
CGACGGCGTTCTGTTCCATCGCACAACCAAACTAACCAATCAGAAGTAGTCGTGCAACAT
TTAACTCCTCCAGGATCACAGAATTTATCGCAATTTATGACTGTTGAAAATGGCAATTCT
CAAATAATATCAAGTGATCCCCAAAAACCCACAACAATAACCGCTCAAAACCTCCCTGCA
TTGCTAGCTACACTTCCACCAGCGCAACAAATAGAGCTATTAAAAAATTTGGGAGGAGAA
CTTGCTATACAGCAAACCCCCACAAAAGAAGAGACAATACTCACCACAGTAACTACATCA
CCAACTCAAGTAATTAACGACACTCTCCAGTCTTCAGCAACAACCACCGTGCAGGTTGCC
CAGACTACACCTCCAACACAACAGCTGGTTATGACATCACAAGGCCAAGTTTTATCACAA
CCTGTAACACAACCGTCTCAAGGCTTAATTATGACATCACAGGGTCAATTAATCACCACA
TCACCTGCTCAAAGTTCCCAAATATCACAAGGTGGATTGGTTATGACACCTAGTGGTCAA
ATAGTTTTACAACAAGCAACGCAACAATCAACACCTAACACCCAATCCGTTGACCAGCAG
CAACAACAAGTGGTTATGCAATTACAAGATCTTAACAAAGTTTTAGCAGCCGCTGCCTCC
GCTGGACAAAACGTTGCACCAACAAGCGCAACAATACAGCAACCAATGCAGGTTCCAACA
TTTGTGTCATCACAACCAAGTGTGTCGCAACAAGTTGCTGTTACGAAGCCAACACAGACT
GCTGCCCCACCTGTATCAACTGCAGCTGCAGCTAGCAATTTGCTTGGTGGGGGCTATGTA
ACTATTGGCAACATGCAAATATCACAGCAACAACTACAGCAACTAGCAGCGCAGGGGGTG
ACTTTACAAACCGTTCCAACAGCCACTCCGGCAACTCAGAATGATAATAAGCCTTCATCA
CCTGAGAAGGAACATACAGACACACAAACATCTGATATGGAGAACTCAACAATCCAGACG
CCACCTGTTTCCGCTACCAGTGAAATGACTGTTGGATCAGAAGTTGTTATTTCTCAGGAA
CAGCAACAACAACAGTTTATCAAAATGCTACAAAATGCAACTGTTTTAGTAAAGCAAGAG
CCACAGGAGGGTCCACAACTGACAAATCAAACAGTGGCACCTGCCACCCAGGCCTCAGTC
GCAAACCAACAGACGTCAGTCAACCAGTTATTGCTTGCCGCTCAGCAATCACAGGGAACA
GCTCAGTTGTTAAATGCAGCCGCAGCTTTGTCAGCATTACAACCTCAGCAAACAGGCACG
CAAGGTAGTACAGCAAATGCCAACACCAACAACAACAATGTGCAACAAGTTTTAACAAGT
CAGCAATTAACGCAGCAACTTCAGCAATTAGCAAACATGCAACAGCAACAATCACAACTC
CCACAACAACAACAACAACCTGGAATAGTTCATATACTATCTGCAGCTGCACAATTGCAA
AATAATAACAACAATACCAGCAGCGACAACTTGCAAAAACAGCTTGCAATGGCTCAGGTT
CTTCAGCAAGTACAACAAAACTCTGGAAATAATCGAATGACCTTGACAGAACTCCAACCA
GTCAGCACACTTTTAAGTCAACTACGACCGGTGTCCGTTCAAAATGCAACAACTGAACAA
CCATATATTGTTGTCTCGTCAGCCAGTTCAGGCACAGTGTCGCAGACACCTTTAAGTGGT
TCTACAAGCAATACAACGTTACCACCATTGGTCCTTCCTGCCACTCAGGTAACGATGGTT
GGCGGTACACAAACCTCATCTACATCTGTAGGAAGTAATCCCAGTCAACAGCCATTTACA
ACAATATACAGTGAAGCGTGGAAACTTGCTACAAACGGACAAAATTTACGAACCACTAAT
GAGGAAGCAAAAGTGTCAACAAGCAAGAACTGACATTTTAAATTCTAAATAATGTTTTTT
AAATTCTGGACTACTAGTATCCGCGCCAAGGGATATGGATTGCCAAAAAATGACTGGGGA
ACTCAGAAGCTTTCTATGTAGCAATTAAAAAACTATACTATTGTACAGACGACTGCCATT
GTTTACCACACAATAATTGCATTTCTTCATGTGTATTTTTTATTTTGTTTCATGTTGTGT
GACCAAAGTTTATTTTATTGAAAATTATTATGTGTTTTTTATGACTATGAAGCAGTTTTA
ACATGTGTAGTATTCTGTGTAAGATTTTTTCTAACATGGATTCAATCTAACAACATCTTT
TTTTATATATAATTAAGAAGGTTACTGGAAAACTTTATAGCGCATGATTAAAAACCTGCT
GCTTGAAACTATTTTTAAGAACACATTAGATTTATATCAAATATAAAACTTCTCGATTAC
AAAAATTAA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[339-414] 1.0E-38 - T[415-478] 2.0E-33 |
| CDD |
Paired_dom (IPR001523) - T[345-472] 2.1932E-75 |
| SMART |
Paired_dom (IPR001523) - T[346-470] 2.8E-89 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[346-472] 60.394 |
| Pfam |
Paired_dom (IPR001523) - T[348-470] 2.0E-68 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[349-470] 2.42E-37 |
| PRINTS |
Paired_dom (IPR001523) - T[350-365] 1.3E-40 - T[368-386] 1.3E-40 - T[388-405] 1.3E-40 - T[406-423] 1.3E-40 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[380-396] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 78.986 % | 242 | 4.94E-71 |
| PAX2_HUMAN | 75.172 % | 240 | 5.4E-70 |
| PAX8_HUMAN | 82.171 % | 240 | 1.0E-69 |